assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	1	433395-433495	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP014407.1_424967_425177_-,NA|128aa|up_6|NZ_CP014407.1_426001_426385_-,NA|34aa|up_0|NZ_CP014407.1_432619_432721_+,NA|221aa|down_1|NZ_CP014407.1_434585_435248_-,NA|179aa|down_7|NZ_CP014407.1_441339_441876_-	NA|84aa|up_9|NZ_CP014407.1_424677_424929_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP014407.1_424967_425177_-	NA	NA|194aa|up_7|NZ_CP014407.1_425354_425936_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP014407.1_426001_426385_-	NA	NA|209aa|up_5|NZ_CP014407.1_426639_427266_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP014407.1_427710_429234_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP014407.1_429249_429819_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP014407.1_430310_431066_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP014407.1_431146_432535_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP014407.1_432619_432721_+	NA	NA|319aa|down_0|NZ_CP014407.1_433511_434468_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP014407.1_434585_435248_-	NA	NA|136aa|down_2|NZ_CP014407.1_435390_435798_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP014407.1_436310_436889_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP014407.1_436888_438157_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP014407.1_438194_439661_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP014407.1_439685_441227_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP014407.1_441339_441876_-	NA	NA|235aa|down_8|NZ_CP014407.1_442268_442973_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP014407.1_443371_443644_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	2	672550-672642	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP014407.1_669034_669142_+,NA|169aa|down_4|NZ_CP014407.1_676389_676896_+,NA|239aa|down_5|NZ_CP014407.1_677057_677774_+	NA|313aa|up_9|NZ_CP014407.1_663236_664175_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP014407.1_664385_664922_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP014407.1_665090_665567_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP014407.1_665606_666902_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP014407.1_666929_667451_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP014407.1_667949_668960_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP014407.1_669034_669142_+	NA	NA|139aa|up_2|NZ_CP014407.1_669234_669651_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP014407.1_669647_671309_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP014407.1_671696_672332_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP014407.1_672710_673598_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP014407.1_673745_674696_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP014407.1_674750_675470_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP014407.1_675453_676254_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP014407.1_676389_676896_+	NA	NA|239aa|down_5|NZ_CP014407.1_677057_677774_+	NA	NA|263aa|down_6|NZ_CP014407.1_677942_678731_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP014407.1_678981_679356_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP014407.1_681072_681609_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP014407.1_681589_682093_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	3	848362-848447	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	848392-848417|848392-848417|848392-848417|848392-848417|848392-848417	NZ_CP014407.1_811354-811329|NZ_CP014407.1_2833791-2833816|NZ_CP014407.1_2833847-2833872|NZ_CP014407.1_811410-811385|NZ_CP014407.1_954501-954476	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP014407.1_835614_836454_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP014407.1_836627_837278_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP014407.1_837274_837511_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP014407.1_837779_839765_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP014407.1_839772_842619_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP014407.1_843280_844213_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP014407.1_844218_845058_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP014407.1_845065_845551_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP014407.1_845558_846998_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP014407.1_847064_848000_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP014407.1_848879_849791_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP014407.1_849787_850783_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP014407.1_850892_851837_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP014407.1_852410_852998_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP014407.1_853240_854143_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP014407.1_854844_855474_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP014407.1_856233_857247_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP014407.1_857299_858310_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP014407.1_858448_859639_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP014407.1_859760_860522_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	4	891691-891772	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	891715-891748|891715-891748	NZ_CP014407.1_1380707-1380674|NZ_CP014407.1_1469866-1469899	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP014407.1_884794_885376_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP014407.1_885448_886066_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP014407.1_886220_886715_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP014407.1_887113_887536_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP014407.1_887683_888400_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP014407.1_888482_889022_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP014407.1_889171_889492_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP014407.1_889635_889992_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP014407.1_890149_890530_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP014407.1_890708_891587_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP014407.1_892328_892715_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP014407.1_892707_893004_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP014407.1_893253_894279_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP014407.1_894271_894967_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP014407.1_894984_895806_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP014407.1_895948_897169_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP014407.1_897256_897985_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP014407.1_898008_898737_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP014407.1_898753_899212_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP014407.1_899223_899556_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	5	954502-954784	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	954532-954557|954532-954557|954532-954557|954532-954557|954646-954671|954646-954671	NZ_CP014407.1_954476-954501|NZ_CP014407.1_811329-811354|NZ_CP014407.1_2833816-2833791|NZ_CP014407.1_2833872-2833847|NZ_CP014407.1_848473-848448|NZ_CP014407.1_394728-394753	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP014407.1_943390_944887_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP014407.1_944879_945221_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP014407.1_945220_945649_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP014407.1_945641_948047_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP014407.1_948177_948561_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP014407.1_948624_949218_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP014407.1_949633_950011_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP014407.1_950372_951500_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP014407.1_951807_952998_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP014407.1_953106_954351_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP014407.1_954853_955783_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP014407.1_956024_957404_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP014407.1_957393_958599_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP014407.1_958949_960281_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP014407.1_960605_961181_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP014407.1_961185_961710_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP014407.1_961725_962301_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP014407.1_962460_965937_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP014407.1_965937_969591_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP014407.1_969756_970659_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	6	1088174-1088261	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP014407.1_1088270_1088405_-,NA|432aa|down_1|NZ_CP014407.1_1088556_1089852_+	NA|224aa|up_9|NZ_CP014407.1_1075964_1076636_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP014407.1_1076628_1078818_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP014407.1_1078796_1080281_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP014407.1_1080273_1081302_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP014407.1_1081304_1081871_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP014407.1_1081885_1083364_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP014407.1_1083385_1084633_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP014407.1_1084897_1085704_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP014407.1_1085696_1087097_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP014407.1_1087111_1087687_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP014407.1_1088270_1088405_-	NA	NA|432aa|down_1|NZ_CP014407.1_1088556_1089852_+	NA	NA|391aa|down_2|NZ_CP014407.1_1090276_1091449_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP014407.1_1091502_1092045_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP014407.1_1092198_1092465_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP014407.1_1092467_1094186_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP014407.1_1094422_1094656_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP014407.1_1094853_1096215_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP014407.1_1096211_1097231_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP014407.1_1097363_1098026_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	7	2033492-2033570	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2033515-2033547|2033515-2033547|2033515-2033547|2033515-2033547|2033515-2033547|2033515-2033547	NZ_CP014407.1_848428-848460|NZ_CP014407.1_1172537-1172505|NZ_CP014407.1_1380661-1380629|NZ_CP014407.1_1698430-1698462|NZ_CP014407.1_2668434-2668466|NZ_CP014407.1_1469912-1469944	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP014407.1_2027686_2027962_+,NA|129aa|up_1|NZ_CP014407.1_2031947_2032334_-,NA|138aa|down_1|NZ_CP014407.1_2035253_2035667_-,NA|37aa|down_2|NZ_CP014407.1_2035695_2035806_-,NA|31aa|down_6|NZ_CP014407.1_2038811_2038904_-	NA|419aa|up_9|NZ_CP014407.1_2025609_2026866_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP014407.1_2026868_2027069_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP014407.1_2027215_2027680_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP014407.1_2027686_2027962_+	NA	NA|406aa|up_5|NZ_CP014407.1_2028239_2029457_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP014407.1_2029572_2030202_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP014407.1_2030191_2031235_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP014407.1_2031231_2031933_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP014407.1_2031947_2032334_-	NA	NA|253aa|up_0|NZ_CP014407.1_2032550_2033309_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP014407.1_2033836_2034823_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP014407.1_2035253_2035667_-	NA	NA|37aa|down_2|NZ_CP014407.1_2035695_2035806_-	NA	NA|244aa|down_3|NZ_CP014407.1_2035891_2036623_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP014407.1_2036624_2037938_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP014407.1_2038229_2038730_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP014407.1_2038811_2038904_-	NA	DEDDh|185aa|down_7|NZ_CP014407.1_2039118_2039673_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP014407.1_2039740_2040811_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP014407.1_2041057_2041588_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	8	2268556-2268706	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP014407.1_2263427_2263658_-,NA|364aa|up_0|NZ_CP014407.1_2267446_2268538_+,NA|35aa|down_0|NZ_CP014407.1_2269037_2269142_-,NA|31aa|down_2|NZ_CP014407.1_2271253_2271346_+	NA|237aa|up_9|NZ_CP014407.1_2259037_2259748_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP014407.1_2259868_2260312_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP014407.1_2260511_2260925_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP014407.1_2261382_2262756_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP014407.1_2263427_2263658_-	NA	NA|313aa|up_4|NZ_CP014407.1_2263688_2264627_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP014407.1_2265061_2265727_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP014407.1_2265878_2266199_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP014407.1_2266200_2267181_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP014407.1_2267446_2268538_+	NA	NA|35aa|down_0|NZ_CP014407.1_2269037_2269142_-	NA	NA|379aa|down_1|NZ_CP014407.1_2269828_2270965_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP014407.1_2271253_2271346_+	NA	NA|286aa|down_3|NZ_CP014407.1_2272050_2272908_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP014407.1_2272975_2273758_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP014407.1_2273989_2275795_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP014407.1_2276475_2278014_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP014407.1_2278048_2280181_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP014407.1_2280192_2280627_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP014407.1_2280626_2281733_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002000625.1_ASM200062v1	NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9	2392474-2392667	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2392497-2392529|2392497-2392529|2392497-2392529|2392497-2392529|2392497-2392529|2392553-2392588|2392553-2392588|2392553-2392588|2392553-2392588|2392612-2392644|2392612-2392644|2392612-2392644|2392612-2392644	NZ_CP014407.1_848428-848460|NZ_CP014407.1_1172537-1172505|NZ_CP014407.1_1380661-1380629|NZ_CP014407.1_1469912-1469944|NZ_CP014407.1_2668434-2668466|NZ_CP014407.1_1172484-1172449|NZ_CP014407.1_1876917-1876882|NZ_CP014407.1_1698369-1698404|NZ_CP014407.1_2044259-2044294|NZ_CP014407.1_848428-848460|NZ_CP014407.1_1172537-1172505|NZ_CP014407.1_1380661-1380629|NZ_CP014407.1_2668434-2668466	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP014407.1_2383001_2383166_+,NA|106aa|up_8|NZ_CP014407.1_2383410_2383728_+,NA|84aa|up_5|NZ_CP014407.1_2388852_2389104_+,NA|57aa|up_0|NZ_CP014407.1_2392243_2392414_+,NA	NA|55aa|up_9|NZ_CP014407.1_2383001_2383166_+	NA	NA|106aa|up_8|NZ_CP014407.1_2383410_2383728_+	NA	NA|1056aa|up_7|NZ_CP014407.1_2383914_2387082_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP014407.1_2387198_2388464_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP014407.1_2388852_2389104_+	NA	NA|255aa|up_4|NZ_CP014407.1_2389095_2389860_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP014407.1_2390021_2390462_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP014407.1_2390454_2391666_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP014407.1_2391767_2392118_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP014407.1_2392243_2392414_+	NA	NA|341aa|down_0|NZ_CP014407.1_2392808_2393831_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP014407.1_2393850_2394450_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP014407.1_2394456_2394690_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP014407.1_2394695_2395142_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP014407.1_2395155_2395641_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP014407.1_2395637_2396897_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP014407.1_2396959_2397454_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP014407.1_2397455_2397962_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP014407.1_2397992_2398997_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP014407.1_2399166_2399772_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
