assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001999125.1_ASM199912v1	NZ_CP019623	Listeria monocytogenes strain 10-092876-1763 LM10 chromosome, complete genome	1	209696-209847	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	CCGCCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA,NA	NA|231aa|up_9|NZ_CP019623.1_196942_197635_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP019623.1_197631_198840_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP019623.1_199524_199833_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP019623.1_199952_200261_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP019623.1_200647_202021_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP019623.1_202071_203028_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP019623.1_203070_203784_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP019623.1_204054_205008_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP019623.1_205249_206839_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP019623.1_207169_208702_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP019623.1_210855_211725_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP019623.1_211796_212120_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP019623.1_212254_212716_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP019623.1_212766_213099_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP019623.1_213165_213840_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP019623.1_213916_214858_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP019623.1_215151_215775_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP019623.1_215864_216449_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP019623.1_216555_217116_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP019623.1_217230_220770_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_001999125.1_ASM199912v1	NZ_CP019623	Listeria monocytogenes strain 10-092876-1763 LM10 chromosome, complete genome	2	521148-521732	1	CRT	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Orphan	GATGTAAGTAATTTTGATACNAGTTCNGTAACTNATATG	39	1	1	521577-521615	NZ_CP019623.1_519372-519410	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA|56aa|up_1|NZ_CP019623.1_516082_516250_+,NA|158aa|down_0|NZ_CP019623.1_522625_523099_+,NA|162aa|down_1|NZ_CP019623.1_523118_523604_+,NA|123aa|down_4|NZ_CP019623.1_525064_525433_+,NA|91aa|down_5|NZ_CP019623.1_526827_527100_+,NA|116aa|down_6|NZ_CP019623.1_527127_527475_+,NA|81aa|down_7|NZ_CP019623.1_527878_528121_+	NA|252aa|up_9|NZ_CP019623.1_504908_505664_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP019623.1_505781_507941_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP019623.1_507937_509086_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP019623.1_509090_510038_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP019623.1_510193_511789_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP019623.1_511922_513206_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP019623.1_513206_514307_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP019623.1_514299_515850_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|56aa|up_1|NZ_CP019623.1_516082_516250_+	NA	NA|513aa|up_0|NZ_CP019623.1_516496_518035_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|158aa|down_0|NZ_CP019623.1_522625_523099_+	NA	NA|162aa|down_1|NZ_CP019623.1_523118_523604_+	NA	NA|102aa|down_2|NZ_CP019623.1_523631_523937_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|95aa|down_3|NZ_CP019623.1_524779_525064_+	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|123aa|down_4|NZ_CP019623.1_525064_525433_+	NA	NA|91aa|down_5|NZ_CP019623.1_526827_527100_+	NA	NA|116aa|down_6|NZ_CP019623.1_527127_527475_+	NA	NA|81aa|down_7|NZ_CP019623.1_527878_528121_+	NA	NA|326aa|down_8|NZ_CP019623.1_528203_529181_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|126aa|down_9|NZ_CP019623.1_529916_530294_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)
GCF_001999125.1_ASM199912v1	NZ_CP019623	Listeria monocytogenes strain 10-092876-1763 LM10 chromosome, complete genome	3	559575-560059	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	7,7,7	7	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA|133aa|up_5|NZ_CP019623.1_554564_554963_+,NA|193aa|down_0|NZ_CP019623.1_560450_561029_+	NA|217aa|up_9|NZ_CP019623.1_550627_551278_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP019623.1_551386_553447_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP019623.1_553450_554053_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP019623.1_554080_554548_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP019623.1_554564_554963_+	NA	NA|217aa|up_4|NZ_CP019623.1_554973_555624_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP019623.1_555620_556667_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP019623.1_556682_556976_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP019623.1_556990_558262_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP019623.1_558401_559337_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP019623.1_560450_561029_+	NA	NA|227aa|down_1|NZ_CP019623.1_561136_561817_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP019623.1_561841_562201_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP019623.1_562207_562666_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP019623.1_563047_564883_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP019623.1_564983_565415_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP019623.1_565461_566892_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP019623.1_567012_567828_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP019623.1_568180_568903_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas6|242aa|down_9|NZ_CP019623.1_569377_570103_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6
GCF_001999125.1_ASM199912v1	NZ_CP019623	Listeria monocytogenes strain 10-092876-1763 LM10 chromosome, complete genome	4	576462-578690	2,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	1	1	578112-578145	NZ_CP019623.1_573563-573530	I-A:I-A:I-A	33,34,34	34	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA,NA|148aa|down_5|NZ_CP019623.1_584236_584680_+,NA|492aa|down_6|NZ_CP019623.1_587739_589215_+	NA|144aa|up_9|NZ_CP019623.1_564983_565415_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_8|NZ_CP019623.1_565461_566892_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_7|NZ_CP019623.1_567012_567828_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_6|NZ_CP019623.1_568180_568903_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas6|242aa|up_5|NZ_CP019623.1_569377_570103_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|565aa|up_4|NZ_CP019623.1_570118_571813_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_CP019623.1_571802_572672_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_CP019623.1_572649_573432_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NZ_CP019623.1_573499_575683_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_CP019623.1_575985_576264_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP019623.1_578761_579130_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP019623.1_579276_580692_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP019623.1_580823_581828_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP019623.1_581859_583176_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP019623.1_583377_584130_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP019623.1_584236_584680_+	NA	NA|492aa|down_6|NZ_CP019623.1_587739_589215_+	NA	NA|499aa|down_7|NZ_CP019623.1_589207_590704_+	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown]	NA|417aa|down_8|NZ_CP019623.1_590714_591965_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|684aa|down_9|NZ_CP019623.1_591980_594032_+	pfam03170, BcsB, Bacterial cellulose synthase subunit
