assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001999085.1_ASM199908v1	NZ_CP019621	Listeria monocytogenes strain 10-092876-1235 LM8 chromosome, complete genome	1	557909-558263	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAATT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAATT	30,29,30	0	0	NA	NA	I-A:I-A:I-A	5,5,5	5	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	NA|133aa|up_5|NZ_CP019621.1_552899_553298_+,NA|193aa|down_0|NZ_CP019621.1_558653_559232_+	NA|217aa|up_9|NZ_CP019621.1_548962_549613_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP019621.1_549721_551782_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP019621.1_551785_552388_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP019621.1_552415_552883_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP019621.1_552899_553298_+	NA	NA|217aa|up_4|NZ_CP019621.1_553308_553959_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP019621.1_553955_555002_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP019621.1_555017_555311_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP019621.1_555325_556597_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP019621.1_556736_557672_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP019621.1_558653_559232_+	NA	NA|227aa|down_1|NZ_CP019621.1_559339_560020_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP019621.1_560044_560404_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP019621.1_560410_560869_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP019621.1_561250_563086_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP019621.1_563186_563618_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP019621.1_563664_565095_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP019621.1_565215_566031_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP019621.1_566311_566680_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP019621.1_566826_568242_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_001999085.1_ASM199908v1	NZ_CP019621	Listeria monocytogenes strain 10-092876-1235 LM8 chromosome, complete genome	2	2703308-2703937	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	Type II-C,Type II-B,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	9,9,6	9	TypeII-C,TypeII-B,TypeII-A	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	NA|121aa|up_0|NZ_CP019621.1_2702419_2702782_-,NA|160aa|down_4|NZ_CP019621.1_2710436_2710916_-	NA|159aa|up_9|NZ_CP019621.1_2685025_2685502_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NZ_CP019621.1_2685501_2688489_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NZ_CP019621.1_2688987_2689830_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NZ_CP019621.1_2689877_2691359_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NZ_CP019621.1_2691459_2692347_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NZ_CP019621.1_2698137_2699166_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP019621.1_2699434_2700961_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP019621.1_2701002_2701854_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP019621.1_2701875_2702298_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP019621.1_2702419_2702782_-	NA	csn2|221aa|down_0|NZ_CP019621.1_2704065_2704728_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP019621.1_2704717_2705059_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP019621.1_2705055_2705922_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP019621.1_2705922_2709927_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP019621.1_2710436_2710916_-	NA	NA|131aa|down_5|NZ_CP019621.1_2711100_2711493_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP019621.1_2711514_2711952_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP019621.1_2712146_2712893_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP019621.1_2712898_2713696_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP019621.1_2713698_2714565_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCF_001999085.1_ASM199908v1	NZ_CP019621	Listeria monocytogenes strain 10-092876-1235 LM8 chromosome, complete genome	3	2805914-2806022	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	Orphan	AGAACTTTCAAAATGTACTTTATTTTGATTTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	NA,NA|74aa|down_2|NZ_CP019621.1_2806813_2807035_-,NA|52aa|down_4|NZ_CP019621.1_2808976_2809132_+,NA|214aa|down_5|NZ_CP019621.1_2809164_2809806_-	NA|330aa|up_9|NZ_CP019621.1_2797895_2798885_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP019621.1_2798906_2799503_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP019621.1_2799506_2799881_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP019621.1_2799986_2800838_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP019621.1_2800956_2801796_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP019621.1_2801916_2802759_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP019621.1_2802804_2803050_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP019621.1_2803064_2803661_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP019621.1_2803769_2804087_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP019621.1_2804116_2805856_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP019621.1_2806146_2806611_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP019621.1_2806628_2806811_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP019621.1_2806813_2807035_-	NA	NA|455aa|down_3|NZ_CP019621.1_2807169_2808534_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP019621.1_2808976_2809132_+	NA	NA|214aa|down_5|NZ_CP019621.1_2809164_2809806_-	NA	NA|505aa|down_6|NZ_CP019621.1_2810503_2812018_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP019621.1_2812133_2813072_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP019621.1_2813114_2814062_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP019621.1_2814202_2815942_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
