assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001999025.1_ASM199902v1	NZ_CP019618	Listeria monocytogenes strain 10-092876-0731 LM5 chromosome, complete genome	1	165298-165406	1	CRISPRCasFinder	no		WYL,casR,cas3,DEDDh,DinG,csa3	Orphan	TAAATCAAAATAAAGTACATTTTGAAAGTTCT	32	0	0	NA	NA	NA	1	1	Orphan	WYL,casR,cas3,DEDDh,DinG,csa3	NA|214aa|up_5|NZ_CP019618.1_160974_161616_+,NA|52aa|up_4|NZ_CP019618.1_162187_162343_-,NA|74aa|up_2|NZ_CP019618.1_164284_164506_+,NA	NA|580aa|up_9|NZ_CP019618.1_154838_156578_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|316aa|up_8|NZ_CP019618.1_156718_157666_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|313aa|up_7|NZ_CP019618.1_157708_158647_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|505aa|up_6|NZ_CP019618.1_158762_160277_+	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|214aa|up_5|NZ_CP019618.1_160974_161616_+	NA	NA|52aa|up_4|NZ_CP019618.1_162187_162343_-	NA	NA|455aa|up_3|NZ_CP019618.1_162785_164150_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|74aa|up_2|NZ_CP019618.1_164284_164506_+	NA	NA|61aa|up_1|NZ_CP019618.1_164508_164691_+	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|155aa|up_0|NZ_CP019618.1_164708_165173_+	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|580aa|down_0|NZ_CP019618.1_165463_167203_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|106aa|down_1|NZ_CP019618.1_167232_167550_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|down_2|NZ_CP019618.1_167658_168255_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|82aa|down_3|NZ_CP019618.1_168269_168515_+	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|281aa|down_4|NZ_CP019618.1_168560_169403_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|280aa|down_5|NZ_CP019618.1_169523_170363_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|284aa|down_6|NZ_CP019618.1_170481_171333_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|125aa|down_7|NZ_CP019618.1_171438_171813_-	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|199aa|down_8|NZ_CP019618.1_171816_172413_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|330aa|down_9|NZ_CP019618.1_172434_173424_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional
GCF_001999025.1_ASM199902v1	NZ_CP019618	Listeria monocytogenes strain 10-092876-0731 LM5 chromosome, complete genome	2	540845-541322	1,1,2	PILER-CR,CRT,CRISPRCasFinder	no		WYL,casR,cas3,DEDDh,DinG,csa3	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,TTTTAGTTACTTATTGTGAAATGTAAAT	29,29,28	3	3	540874-540908|541194-541229|541259-541293	NZ_CP019618.1_1287397-1287431|NZ_CP019618.1_1286249-1286284|NZ_CP019618.1_2449976-2450010	I-A:I-A:I-A	7,7,7	7	Orphan	WYL,casR,cas3,DEDDh,DinG,csa3	NA|133aa|up_5|NZ_CP019618.1_535834_536233_+,NA|193aa|down_0|NZ_CP019618.1_541713_542292_+	NA|217aa|up_9|NZ_CP019618.1_531897_532548_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP019618.1_532656_534717_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP019618.1_534720_535323_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP019618.1_535350_535818_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP019618.1_535834_536233_+	NA	NA|217aa|up_4|NZ_CP019618.1_536243_536894_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP019618.1_536890_537937_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP019618.1_537952_538246_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP019618.1_538260_539532_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP019618.1_539671_540607_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP019618.1_541713_542292_+	NA	NA|227aa|down_1|NZ_CP019618.1_542398_543079_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP019618.1_543103_543463_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP019618.1_543469_543928_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP019618.1_544309_546145_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP019618.1_546245_546677_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP019618.1_546723_548154_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP019618.1_548274_549090_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP019618.1_549370_549739_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP019618.1_549885_551301_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_001999025.1_ASM199902v1	NZ_CP019618	Listeria monocytogenes strain 10-092876-0731 LM5 chromosome, complete genome	3	2787194-2787345	3	CRISPRCasFinder	no	cas3	WYL,casR,cas3,DEDDh,DinG,csa3	Unclear	GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG	47	0	0	NA	NA	NA	1	1	Unclear	WYL,casR,cas3,DEDDh,DinG,csa3	NA,NA	cas3|1180aa|up_9|NZ_CP019618.1_2776318_2779858_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|187aa|up_8|NZ_CP019618.1_2779972_2780533_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|195aa|up_7|NZ_CP019618.1_2780639_2781224_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|208aa|up_6|NZ_CP019618.1_2781313_2781937_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|314aa|up_5|NZ_CP019618.1_2782230_2783172_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|225aa|up_4|NZ_CP019618.1_2783248_2783923_+	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|111aa|up_3|NZ_CP019618.1_2783989_2784322_+	PRK01119, PRK01119, putative heavy metal-binding protein	NA|154aa|up_2|NZ_CP019618.1_2784372_2784834_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_1|NZ_CP019618.1_2784968_2785292_-	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|290aa|up_0|NZ_CP019618.1_2785363_2786233_-	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|511aa|down_0|NZ_CP019618.1_2788386_2789919_-	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|530aa|down_1|NZ_CP019618.1_2790249_2791839_-	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|318aa|down_2|NZ_CP019618.1_2792080_2793034_+	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|238aa|down_3|NZ_CP019618.1_2793304_2794018_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|319aa|down_4|NZ_CP019618.1_2794060_2795017_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|458aa|down_5|NZ_CP019618.1_2795067_2796441_-	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|103aa|down_6|NZ_CP019618.1_2796827_2797136_-	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|down_7|NZ_CP019618.1_2797255_2797564_-	PRK13259, PRK13259, septation regulator SpoVG	NA|403aa|down_8|NZ_CP019618.1_2798248_2799457_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|231aa|down_9|NZ_CP019618.1_2799453_2800146_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
