assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001999005.1_ASM199900v1	NZ_CP019617	Listeria monocytogenes strain 10-092876-0055 LM4 chromosome, complete genome	1	555161-555443	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAG---TTACTTATTTTGAA----ATGTAAAT,GTTTTAGTTACTTATTTTGAAATGTAAAT,GTTTTAGTTACTTATTTTGAAATGTAAAT	36,29,29	0	0	NA	NA	NA:I-A:I-A	4,4,4	4	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|133aa|up_5|NZ_CP019617.1_550218_550617_+,NA|193aa|down_0|NZ_CP019617.1_555834_556413_+	NA|217aa|up_9|NZ_CP019617.1_546281_546932_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP019617.1_547040_549101_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP019617.1_549104_549707_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP019617.1_549734_550202_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP019617.1_550218_550617_+	NA	NA|217aa|up_4|NZ_CP019617.1_550627_551278_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|326aa|up_3|NZ_CP019617.1_551274_552252_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP019617.1_552267_552561_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP019617.1_552575_553847_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP019617.1_553986_554922_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP019617.1_555834_556413_+	NA	NA|227aa|down_1|NZ_CP019617.1_556520_557201_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP019617.1_557225_557585_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP019617.1_557591_558050_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP019617.1_558431_560267_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP019617.1_560367_560799_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP019617.1_560845_562276_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP019617.1_562396_563212_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP019617.1_563563_564286_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NZ_CP019617.1_564301_565990_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_001999005.1_ASM199900v1	NZ_CP019617	Listeria monocytogenes strain 10-092876-0055 LM4 chromosome, complete genome	2	570639-572674	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAA---CTACTTATTATGAA----ATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	36,29,29	0	0	NA	NA	NA:I-A:I-A	30,31,31	31	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|148aa|down_5|NZ_CP019617.1_578221_578665_+,NA|492aa|down_9|NZ_CP019617.1_582973_584449_+	NA|612aa|up_9|NZ_CP019617.1_558431_560267_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NZ_CP019617.1_560367_560799_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NZ_CP019617.1_560845_562276_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NZ_CP019617.1_562396_563212_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NZ_CP019617.1_563563_564286_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NZ_CP019617.1_564301_565990_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_CP019617.1_565979_566849_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_CP019617.1_566826_567609_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NZ_CP019617.1_567676_569860_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_CP019617.1_570162_570441_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP019617.1_572746_573115_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP019617.1_573262_574678_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP019617.1_574809_575814_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP019617.1_575845_577162_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP019617.1_577363_578116_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP019617.1_578221_578665_+	NA	NA|554aa|down_6|NZ_CP019617.1_578710_580372_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_CP019617.1_580627_581959_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_CP019617.1_582003_582744_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_CP019617.1_582973_584449_+	NA
GCF_001999005.1_ASM199900v1	NZ_CP019617	Listeria monocytogenes strain 10-092876-0055 LM4 chromosome, complete genome	3	2518566-2518727	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|140aa|up_7|NZ_CP019617.1_2503850_2504270_-,NA|58aa|down_3|NZ_CP019617.1_2520912_2521086_-	WYL|299aa|up_9|NZ_CP019617.1_2502164_2503061_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|NZ_CP019617.1_2503105_2503675_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|NZ_CP019617.1_2503850_2504270_-	NA	NA|1311aa|up_6|NZ_CP019617.1_2505219_2509152_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NZ_CP019617.1_2509166_2510111_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NZ_CP019617.1_2510171_2513447_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NZ_CP019617.1_2513829_2514738_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NZ_CP019617.1_2514797_2515262_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NZ_CP019617.1_2515277_2517659_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NZ_CP019617.1_2517692_2518439_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NZ_CP019617.1_2518801_2519035_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NZ_CP019617.1_2519134_2519878_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NZ_CP019617.1_2520060_2520780_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NZ_CP019617.1_2520912_2521086_-	NA	NA|431aa|down_4|NZ_CP019617.1_2521188_2522481_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NZ_CP019617.1_2522616_2524149_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|337aa|down_6|NZ_CP019617.1_2526276_2527287_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_7|NZ_CP019617.1_2527318_2528365_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|448aa|down_8|NZ_CP019617.1_2528806_2530150_-	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|309aa|down_9|NZ_CP019617.1_2530308_2531235_-	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)
GCF_001999005.1_ASM199900v1	NZ_CP019617	Listeria monocytogenes strain 10-092876-0055 LM4 chromosome, complete genome	4	2718742-2720030	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Type II-A,Type II-C,Type II-B	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	36,36,36	1	2	2719635-2719664|2719635-2719664	NZ_CP019617.1_2372514-2372543|NZ_CP019617.1_2691715-2691744	II-A,II-B:II-A,II-B:II-A,II-B	19,19,18	19	TypeII-A,TypeII-C,TypeII-B	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|236aa|up_8|NZ_CP019617.1_2704451_2705159_+,NA|227aa|up_6|NZ_CP019617.1_2705939_2706620_+,NA|121aa|up_0|NZ_CP019617.1_2717853_2718216_-,NA|160aa|down_4|NZ_CP019617.1_2726529_2727009_-	NA|142aa|up_9|NZ_CP019617.1_2704011_2704437_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|236aa|up_8|NZ_CP019617.1_2704451_2705159_+	NA	NA|234aa|up_7|NZ_CP019617.1_2705217_2705919_+	pfam13425, O-antigen_lig, O-antigen ligase like membrane protein	NA|227aa|up_6|NZ_CP019617.1_2705939_2706620_+	NA	NA|388aa|up_5|NZ_CP019617.1_2706681_2707845_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|343aa|up_4|NZ_CP019617.1_2713572_2714601_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP019617.1_2714868_2716395_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP019617.1_2716436_2717288_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP019617.1_2717309_2717732_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP019617.1_2717853_2718216_-	NA	csn2|221aa|down_0|NZ_CP019617.1_2720158_2720821_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP019617.1_2720810_2721152_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP019617.1_2721148_2722015_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP019617.1_2722015_2726020_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP019617.1_2726529_2727009_-	NA	NA|131aa|down_5|NZ_CP019617.1_2727231_2727624_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP019617.1_2727645_2728083_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP019617.1_2728277_2729024_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP019617.1_2729029_2729827_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP019617.1_2729829_2730696_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
