assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001998985.1_ASM199898v1	NZ_CP019616	Listeria monocytogenes strain 10-092876-1063 LM3 chromosome, complete genome	1	527765-528349	1	CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|158aa|down_1|NZ_CP019616.1_531137_531611_+,NA|162aa|down_2|NZ_CP019616.1_531630_532116_+,NA|89aa|down_4|NZ_CP019616.1_532524_532791_+	NA|252aa|up_9|NZ_CP019616.1_511513_512269_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP019616.1_512385_514545_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP019616.1_514541_515690_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP019616.1_515694_516642_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP019616.1_516797_518393_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP019616.1_518527_519811_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP019616.1_519811_520912_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP019616.1_520904_522455_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP019616.1_523089_524628_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|694aa|up_0|NZ_CP019616.1_524890_526972_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|587aa|down_0|NZ_CP019616.1_529311_531072_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_1|NZ_CP019616.1_531137_531611_+	NA	NA|162aa|down_2|NZ_CP019616.1_531630_532116_+	NA	NA|102aa|down_3|NZ_CP019616.1_532143_532449_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_4|NZ_CP019616.1_532524_532791_+	NA	NA|321aa|down_5|NZ_CP019616.1_532870_533833_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|276aa|down_6|NZ_CP019616.1_534594_535422_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|120aa|down_7|NZ_CP019616.1_535449_535809_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|187aa|down_8|NZ_CP019616.1_536134_536695_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_9|NZ_CP019616.1_536804_538505_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]
GCF_001998985.1_ASM199898v1	NZ_CP019616	Listeria monocytogenes strain 10-092876-1063 LM3 chromosome, complete genome	2	530054-530233	1	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	TAAGCAACTTTGATACCAGTTCAG	24	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|158aa|down_0|NZ_CP019616.1_531137_531611_+,NA|162aa|down_1|NZ_CP019616.1_531630_532116_+,NA|89aa|down_3|NZ_CP019616.1_532524_532791_+	NA|720aa|up_9|NZ_CP019616.1_512385_514545_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_8|NZ_CP019616.1_514541_515690_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_7|NZ_CP019616.1_515694_516642_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_6|NZ_CP019616.1_516797_518393_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_5|NZ_CP019616.1_518527_519811_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_4|NZ_CP019616.1_519811_520912_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_3|NZ_CP019616.1_520904_522455_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_2|NZ_CP019616.1_523089_524628_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|694aa|up_1|NZ_CP019616.1_524890_526972_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|690aa|up_0|NZ_CP019616.1_527107_529177_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_CP019616.1_531137_531611_+	NA	NA|162aa|down_1|NZ_CP019616.1_531630_532116_+	NA	NA|102aa|down_2|NZ_CP019616.1_532143_532449_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP019616.1_532524_532791_+	NA	NA|321aa|down_4|NZ_CP019616.1_532870_533833_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|276aa|down_5|NZ_CP019616.1_534594_535422_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|120aa|down_6|NZ_CP019616.1_535449_535809_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|187aa|down_7|NZ_CP019616.1_536134_536695_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_8|NZ_CP019616.1_536804_538505_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|368aa|down_9|NZ_CP019616.1_538655_539759_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional
GCF_001998985.1_ASM199898v1	NZ_CP019616	Listeria monocytogenes strain 10-092876-1063 LM3 chromosome, complete genome	3	2106480-2106737	2	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	CATATTAGTAACGGAACTCGTATC	24	0	0	NA	NA	NA	3	3	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA|89aa|up_4|NZ_CP019616.1_2101806_2102073_-,NA|162aa|up_2|NZ_CP019616.1_2102480_2102966_-,NA|158aa|up_1|NZ_CP019616.1_2102985_2103459_-,NA	NA|922aa|up_9|NZ_CP019616.1_2093815_2096581_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|176aa|up_8|NZ_CP019616.1_2096863_2097391_-	pfam05103, DivIVA, DivIVA protein	NA|174aa|up_7|NZ_CP019616.1_2097486_2098008_-	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|369aa|up_6|NZ_CP019616.1_2098012_2099119_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|367aa|up_5|NZ_CP019616.1_2100382_2101483_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|89aa|up_4|NZ_CP019616.1_2101806_2102073_-	NA	NA|102aa|up_3|NZ_CP019616.1_2102147_2102453_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|162aa|up_2|NZ_CP019616.1_2102480_2102966_-	NA	NA|158aa|up_1|NZ_CP019616.1_2102985_2103459_-	NA	NA|664aa|up_0|NZ_CP019616.1_2103524_2105516_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|638aa|down_0|NZ_CP019616.1_2107543_2109457_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|717aa|down_1|NZ_CP019616.1_2109591_2111742_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|513aa|down_2|NZ_CP019616.1_2112004_2113543_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|260aa|down_3|NZ_CP019616.1_2113564_2114344_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|198aa|down_4|NZ_CP019616.1_2114371_2114965_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|259aa|down_5|NZ_CP019616.1_2115948_2116725_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|97aa|down_6|NZ_CP019616.1_2116849_2117140_-	pfam02325, YGGT, YGGT family	NA|153aa|down_7|NZ_CP019616.1_2117162_2117621_-	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_8|NZ_CP019616.1_2117624_2118314_-	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|392aa|down_9|NZ_CP019616.1_2118432_2119608_-	PRK09330, PRK09330, cell division protein FtsZ; Validated
GCF_001998985.1_ASM199898v1	NZ_CP019616	Listeria monocytogenes strain 10-092876-1063 LM3 chromosome, complete genome	4	2500316-2500470	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,DEDDh	Unclear	ATGGAAACAACGCTCCACTTCGTTATGCCTTGTATTGGAGTTCTAGGG	48	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA|140aa|up_8|NZ_CP019616.1_2484510_2484930_-,NA|58aa|down_3|NZ_CP019616.1_2502642_2502816_-	NA|190aa|up_9|NZ_CP019616.1_2483765_2484335_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_8|NZ_CP019616.1_2484510_2484930_-	NA	NA|354aa|up_7|NZ_CP019616.1_2485852_2486914_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1311aa|up_6|NZ_CP019616.1_2486964_2490897_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NZ_CP019616.1_2490911_2491856_-	NF033189, internalin_A, class 1 internalin InlA	NA|1092aa|up_4|NZ_CP019616.1_2491916_2495192_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NZ_CP019616.1_2495574_2496483_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NZ_CP019616.1_2496538_2497003_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NZ_CP019616.1_2497018_2499400_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NZ_CP019616.1_2499433_2500180_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NZ_CP019616.1_2500541_2500775_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NZ_CP019616.1_2500864_2501608_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NZ_CP019616.1_2501790_2502510_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NZ_CP019616.1_2502642_2502816_-	NA	NA|431aa|down_4|NZ_CP019616.1_2502918_2504211_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NZ_CP019616.1_2504346_2505879_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|337aa|down_6|NZ_CP019616.1_2508006_2509017_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_7|NZ_CP019616.1_2509049_2510096_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|448aa|down_8|NZ_CP019616.1_2510536_2511880_-	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|309aa|down_9|NZ_CP019616.1_2512039_2512966_-	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)
