assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001998945.1_ASM199894v1	NZ_CP019615	Listeria monocytogenes strain 10-092876-0168 chromosome, complete genome	1	272389-274999	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas3,DEDDh,casR	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	36,36,36	2	3	273812-273841|274208-274237|274208-274237	NZ_CP019615.1_1751104-1751075|NZ_CP019615.1_297594-297623|NZ_CP019615.1_622387-622416	II-A,II-B:II-A,II-B:II-A,II-B	39,39,24	39	TypeII-A,TypeII-B,TypeII-C	cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas3,DEDDh,casR	NA|160aa|up_4|NZ_CP019615.1_265409_265889_+,NA|121aa|down_0|NZ_CP019615.1_275523_275886_+,NA|202aa|down_6|NZ_CP019615.1_287121_287727_-,NA|236aa|down_7|NZ_CP019615.1_287785_288493_-	NA|289aa|up_9|NZ_CP019615.1_261721_262588_+	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|266aa|up_8|NZ_CP019615.1_262590_263388_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|249aa|up_7|NZ_CP019615.1_263393_264140_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_6|NZ_CP019615.1_264334_264772_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_5|NZ_CP019615.1_264793_265186_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|160aa|up_4|NZ_CP019615.1_265409_265889_+	NA	cas9|1335aa|up_3|NZ_CP019615.1_266398_270403_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NZ_CP019615.1_270403_271270_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP019615.1_271266_271608_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP019615.1_271597_272260_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|121aa|down_0|NZ_CP019615.1_275523_275886_+	NA	NA|141aa|down_1|NZ_CP019615.1_276007_276430_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|284aa|down_2|NZ_CP019615.1_276451_277303_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|509aa|down_3|NZ_CP019615.1_277343_278870_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|343aa|down_4|NZ_CP019615.1_279138_280167_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|388aa|down_5|NZ_CP019615.1_285895_287059_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|202aa|down_6|NZ_CP019615.1_287121_287727_-	NA	NA|236aa|down_7|NZ_CP019615.1_287785_288493_-	NA	NA|142aa|down_8|NZ_CP019615.1_288507_288933_-	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|141aa|down_9|NZ_CP019615.1_288948_289371_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001998945.1_ASM199894v1	NZ_CP019615	Listeria monocytogenes strain 10-092876-0168 chromosome, complete genome	2	2573037-2573621	2	CRT	no		cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas3,DEDDh,casR	Orphan	CATATNAGTTACTGAACTNGTATCAAAATTACTTACATC	39	0	0	NA	NA	NA	7	7	Orphan	cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas3,DEDDh,casR	NA|89aa|up_4|NZ_CP019615.1_2568594_2568861_-,NA|162aa|up_2|NZ_CP019615.1_2569269_2569755_-,NA|158aa|up_1|NZ_CP019615.1_2569774_2570248_-,NA	NA|567aa|up_9|NZ_CP019615.1_2562880_2564581_-	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|187aa|up_8|NZ_CP019615.1_2564690_2565251_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|120aa|up_7|NZ_CP019615.1_2565576_2565936_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|276aa|up_6|NZ_CP019615.1_2565963_2566791_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|321aa|up_5|NZ_CP019615.1_2567552_2568515_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|89aa|up_4|NZ_CP019615.1_2568594_2568861_-	NA	NA|102aa|up_3|NZ_CP019615.1_2568936_2569242_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|162aa|up_2|NZ_CP019615.1_2569269_2569755_-	NA	NA|158aa|up_1|NZ_CP019615.1_2569774_2570248_-	NA	NA|587aa|up_0|NZ_CP019615.1_2570313_2572074_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|694aa|down_0|NZ_CP019615.1_2574413_2576495_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|517aa|down_1|NZ_CP019615.1_2578932_2580483_-	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|367aa|down_2|NZ_CP019615.1_2580475_2581576_-	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|428aa|down_3|NZ_CP019615.1_2581576_2582860_-	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|532aa|down_4|NZ_CP019615.1_2582994_2584590_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|316aa|down_5|NZ_CP019615.1_2584745_2585693_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|383aa|down_6|NZ_CP019615.1_2585697_2586846_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|720aa|down_7|NZ_CP019615.1_2586842_2589002_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|252aa|down_8|NZ_CP019615.1_2589118_2589874_+	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|222aa|down_9|NZ_CP019615.1_2589894_2590560_+	COG3619, COG3619, Predicted membrane protein [Function unknown]
GCF_001998945.1_ASM199894v1	NZ_CP019615	Listeria monocytogenes strain 10-092876-0168 chromosome, complete genome	3	2856568-2856722	2	CRISPRCasFinder	no	cas3	cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas3,DEDDh,casR	Unclear	GTCTCTGGCAAAGCAAGTCTTAACTCTTCATCCGTAGGTGGTGGTGGAAA	50	0	0	NA	NA	NA	1	1	Unclear	cas9,cas1,cas2,csn2,csa3,WYL,DinG,cas3,DEDDh,casR	NA,NA	NA|93aa|up_9|NZ_CP019615.1_2844638_2844917_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|530aa|up_8|NZ_CP019615.1_2844940_2846530_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	cas3|1180aa|up_7|NZ_CP019615.1_2846560_2850100_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|187aa|up_6|NZ_CP019615.1_2850213_2850774_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|195aa|up_5|NZ_CP019615.1_2850880_2851465_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|208aa|up_4|NZ_CP019615.1_2851554_2852178_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|111aa|up_3|NZ_CP019615.1_2853315_2853648_+	PRK01119, PRK01119, putative heavy metal-binding protein	NA|154aa|up_2|NZ_CP019615.1_2853700_2854162_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_1|NZ_CP019615.1_2854294_2854618_-	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|290aa|up_0|NZ_CP019615.1_2854689_2855559_-	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|511aa|down_0|NZ_CP019615.1_2857713_2859246_-	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|530aa|down_1|NZ_CP019615.1_2859580_2861170_-	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|318aa|down_2|NZ_CP019615.1_2861412_2862366_+	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|238aa|down_3|NZ_CP019615.1_2862638_2863352_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|319aa|down_4|NZ_CP019615.1_2863395_2864352_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|458aa|down_5|NZ_CP019615.1_2864402_2865776_-	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|103aa|down_6|NZ_CP019615.1_2866151_2866460_-	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|down_7|NZ_CP019615.1_2866578_2866887_-	PRK13259, PRK13259, septation regulator SpoVG	NA|403aa|down_8|NZ_CP019615.1_2867571_2868780_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|231aa|down_9|NZ_CP019615.1_2868776_2869469_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
