assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001990225.1_ASM199022v1	NZ_CP019596	Bifidobacterium breve strain LMC520 chromosome, complete genome	1	152362-152698	1	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	RT,DEDDh,cas3,WYL	NA|47aa|up_3|NZ_CP019596.1_147222_147363_+,NA|264aa|down_8|NZ_CP019596.1_163956_164748_-	NA|356aa|up_9|NZ_CP019596.1_140126_141194_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_8|NZ_CP019596.1_141347_142634_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_7|NZ_CP019596.1_142657_144241_+	cd01031, EriC, ClC chloride channel EriC	NA|347aa|up_6|NZ_CP019596.1_144427_145468_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|132aa|up_5|NZ_CP019596.1_145467_145863_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_4|NZ_CP019596.1_146137_147223_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|47aa|up_3|NZ_CP019596.1_147222_147363_+	NA	NA|509aa|up_2|NZ_CP019596.1_147649_149176_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP019596.1_149380_151015_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP019596.1_151084_152137_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP019596.1_153120_154488_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP019596.1_154882_155935_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|335aa|down_2|NZ_CP019596.1_156204_157209_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|436aa|down_3|NZ_CP019596.1_157389_158697_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|374aa|down_4|NZ_CP019596.1_158775_159897_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|316aa|down_5|NZ_CP019596.1_159904_160852_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|467aa|down_6|NZ_CP019596.1_160958_162359_+	TIGR03356, BGL, beta-galactosidase	NA|351aa|down_7|NZ_CP019596.1_162623_163676_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|264aa|down_8|NZ_CP019596.1_163956_164748_-	NA	NA|343aa|down_9|NZ_CP019596.1_164744_165773_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_001990225.1_ASM199022v1	NZ_CP019596	Bifidobacterium breve strain LMC520 chromosome, complete genome	2	375831-375909	2	CRISPRCasFinder	no	RT	RT,DEDDh,cas3,WYL	Unclear	CGCCGGGTGGCTTTTTCAATGCCCG	25	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,WYL	NA|62aa|up_9|NZ_CP019596.1_368421_368607_+,NA|73aa|up_8|NZ_CP019596.1_368603_368822_+,NA|62aa|up_7|NZ_CP019596.1_369270_369456_+,NA|280aa|up_6|NZ_CP019596.1_369603_370443_+,NA|63aa|up_4|NZ_CP019596.1_371331_371520_+,NA|401aa|up_1|NZ_CP019596.1_374386_375589_+,NA|87aa|up_0|NZ_CP019596.1_375546_375807_+,NA|178aa|down_0|NZ_CP019596.1_375938_376472_+,NA|105aa|down_2|NZ_CP019596.1_377422_377737_+,NA|112aa|down_4|NZ_CP019596.1_378197_378533_+,NA|92aa|down_5|NZ_CP019596.1_378544_378820_+,NA|122aa|down_6|NZ_CP019596.1_378816_379182_+,NA|196aa|down_7|NZ_CP019596.1_379213_379801_+,NA|107aa|down_8|NZ_CP019596.1_379855_380176_+	NA|62aa|up_9|NZ_CP019596.1_368421_368607_+	NA	NA|73aa|up_8|NZ_CP019596.1_368603_368822_+	NA	NA|62aa|up_7|NZ_CP019596.1_369270_369456_+	NA	NA|280aa|up_6|NZ_CP019596.1_369603_370443_+	NA	NA|98aa|up_5|NZ_CP019596.1_370848_371142_+	pfam14279, HNH_5, HNH endonuclease	NA|63aa|up_4|NZ_CP019596.1_371331_371520_+	NA	NA|478aa|up_3|NZ_CP019596.1_371503_372937_+	TIGR01547, Uncharacterized_protein_YqaT, phage terminase, large subunit, PBSX family	NA|500aa|up_2|NZ_CP019596.1_372936_374436_+	pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like	NA|401aa|up_1|NZ_CP019596.1_374386_375589_+	NA	NA|87aa|up_0|NZ_CP019596.1_375546_375807_+	NA	NA|178aa|down_0|NZ_CP019596.1_375938_376472_+	NA	NA|302aa|down_1|NZ_CP019596.1_376517_377423_+	pfam05065, Phage_capsid, Phage capsid family	NA|105aa|down_2|NZ_CP019596.1_377422_377737_+	NA	NA|151aa|down_3|NZ_CP019596.1_377748_378201_+	pfam09355, Phage_Gp19, Phage protein Gp19/Gp15/Gp42	NA|112aa|down_4|NZ_CP019596.1_378197_378533_+	NA	NA|92aa|down_5|NZ_CP019596.1_378544_378820_+	NA	NA|122aa|down_6|NZ_CP019596.1_378816_379182_+	NA	NA|196aa|down_7|NZ_CP019596.1_379213_379801_+	NA	NA|107aa|down_8|NZ_CP019596.1_379855_380176_+	NA	NA|131aa|down_9|NZ_CP019596.1_380187_380580_+	pfam17318, DUF5361, Family of unknown function (DUF5361)
GCF_001990225.1_ASM199022v1	NZ_CP019596	Bifidobacterium breve strain LMC520 chromosome, complete genome	3	382817-382991	1	PILER-CR	no	RT	RT,DEDDh,cas3,WYL	Unclear	AACGTCCTGAACGCCATCAGCGGCGTATGGACGAGCGTATGGA	43	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|178aa|up_9|NZ_CP019596.1_375938_376472_+,NA|105aa|up_7|NZ_CP019596.1_377422_377737_+,NA|112aa|up_5|NZ_CP019596.1_378197_378533_+,NA|92aa|up_4|NZ_CP019596.1_378544_378820_+,NA|122aa|up_3|NZ_CP019596.1_378816_379182_+,NA|196aa|up_2|NZ_CP019596.1_379213_379801_+,NA|107aa|up_1|NZ_CP019596.1_379855_380176_+,NA|260aa|down_0|NZ_CP019596.1_383669_384449_+,NA|199aa|down_2|NZ_CP019596.1_388198_388795_+,NA|56aa|down_3|NZ_CP019596.1_388794_388962_+,NA|527aa|down_5|NZ_CP019596.1_389687_391268_+,NA|77aa|down_7|NZ_CP019596.1_392847_393078_+,NA|108aa|down_8|NZ_CP019596.1_393205_393529_+	NA|178aa|up_9|NZ_CP019596.1_375938_376472_+	NA	NA|302aa|up_8|NZ_CP019596.1_376517_377423_+	pfam05065, Phage_capsid, Phage capsid family	NA|105aa|up_7|NZ_CP019596.1_377422_377737_+	NA	NA|151aa|up_6|NZ_CP019596.1_377748_378201_+	pfam09355, Phage_Gp19, Phage protein Gp19/Gp15/Gp42	NA|112aa|up_5|NZ_CP019596.1_378197_378533_+	NA	NA|92aa|up_4|NZ_CP019596.1_378544_378820_+	NA	NA|122aa|up_3|NZ_CP019596.1_378816_379182_+	NA	NA|196aa|up_2|NZ_CP019596.1_379213_379801_+	NA	NA|107aa|up_1|NZ_CP019596.1_379855_380176_+	NA	NA|131aa|up_0|NZ_CP019596.1_380187_380580_+	pfam17318, DUF5361, Family of unknown function (DUF5361)	NA|260aa|down_0|NZ_CP019596.1_383669_384449_+	NA	NA|1240aa|down_1|NZ_CP019596.1_384469_388189_+	pfam06605, Prophage_tail, Prophage endopeptidase tail	NA|199aa|down_2|NZ_CP019596.1_388198_388795_+	NA	NA|56aa|down_3|NZ_CP019596.1_388794_388962_+	NA	NA|241aa|down_4|NZ_CP019596.1_388948_389671_+	pfam10651, DUF2479, Domain of unknown function (DUF2479)	NA|527aa|down_5|NZ_CP019596.1_389687_391268_+	NA	RT|412aa|down_6|NZ_CP019596.1_391681_392917_+	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|77aa|down_7|NZ_CP019596.1_392847_393078_+	NA	NA|108aa|down_8|NZ_CP019596.1_393205_393529_+	NA	NA|412aa|down_9|NZ_CP019596.1_393590_394826_+	cd06417, GH25_LysA-like, LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues
GCF_001990225.1_ASM199022v1	NZ_CP019596	Bifidobacterium breve strain LMC520 chromosome, complete genome	4	2133032-2133178	3	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	1	1	2133118-2133153	NZ_CP019596.1_2134455-2134490	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|702aa|up_3|NZ_CP019596.1_2128221_2130327_+,NA|318aa|down_0|NZ_CP019596.1_2133292_2134246_+	NA|75aa|up_9|NZ_CP019596.1_2111349_2111574_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|3161aa|up_8|NZ_CP019596.1_2112971_2122454_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP019596.1_2122493_2124116_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_CP019596.1_2124108_2125977_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP019596.1_2126489_2127089_+	pfam02632, BioY, BioY family	NA|296aa|up_4|NZ_CP019596.1_2127090_2127978_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|702aa|up_3|NZ_CP019596.1_2128221_2130327_+	NA	NA|286aa|up_2|NZ_CP019596.1_2130405_2131263_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP019596.1_2131536_2132229_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP019596.1_2132244_2132676_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP019596.1_2133292_2134246_+	NA	NA|276aa|down_1|NZ_CP019596.1_2134662_2135490_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP019596.1_2135522_2135750_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP019596.1_2136079_2137285_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP019596.1_2137425_2138688_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP019596.1_2138783_2139917_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP019596.1_2140024_2141716_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP019596.1_2141782_2142034_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP019596.1_2142056_2142365_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1029aa|down_9|NZ_CP019596.1_2142551_2145638_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_001990225.1_ASM199022v1	NZ_CP019596	Bifidobacterium breve strain LMC520 chromosome, complete genome	5	2261361-2261445	4	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	CCTTCCCGAATATGTACCACTGAC	24	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,WYL	NA,NA|57aa|down_2|NZ_CP019596.1_2265890_2266061_+	NA|655aa|up_9|NZ_CP019596.1_2244296_2246261_-	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains	NA|412aa|up_8|NZ_CP019596.1_2246727_2247963_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|468aa|up_7|NZ_CP019596.1_2248334_2249738_-	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|425aa|up_6|NZ_CP019596.1_2251155_2252430_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|487aa|up_5|NZ_CP019596.1_2252699_2254160_+	pfam02687, FtsX, FtsX-like permease family	NA|395aa|up_4|NZ_CP019596.1_2254156_2255341_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|255aa|up_3|NZ_CP019596.1_2255701_2256466_+	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein	NA|287aa|up_2|NZ_CP019596.1_2256595_2257456_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|804aa|up_1|NZ_CP019596.1_2257739_2260151_-	pfam02705, K_trans, K+ potassium transporter	NA|320aa|up_0|NZ_CP019596.1_2260349_2261309_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|602aa|down_0|NZ_CP019596.1_2261563_2263369_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|637aa|down_1|NZ_CP019596.1_2263564_2265475_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|57aa|down_2|NZ_CP019596.1_2265890_2266061_+	NA	NA|439aa|down_3|NZ_CP019596.1_2266177_2267494_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|327aa|down_4|NZ_CP019596.1_2267848_2268829_-	cd09004, GH43_bXyl-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (BT3675;BT_3675) and (BT3662;BT_3662); includes mostly xylanases	NA|278aa|down_5|NZ_CP019596.1_2268949_2269783_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|320aa|down_6|NZ_CP019596.1_2269828_2270788_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|416aa|down_7|NZ_CP019596.1_2270950_2272198_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|349aa|down_8|NZ_CP019596.1_2272471_2273518_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|700aa|down_9|NZ_CP019596.1_2273793_2275893_+	pfam02449, Glyco_hydro_42, Beta-galactosidase
