The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	27282	70036	4108658	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	77634	136107	4108658	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132699_132984_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	164892	225403	4108658	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	233335	286923	4108658	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	390856	448365	4108658	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	589550	650741	4108658	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589550_590501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590976_591867_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591863_592685_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592884_593376_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593394_594468_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594514_595618_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595693_596314_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596334_596844_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596898_597150_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597213_598347_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598354_598741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598737_601257_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601685_602024_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602020_602527_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602588_603389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603499_604441_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604534_606070_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607749_609600_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609603_610437_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610436_611378_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611629_612601_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612742_615031_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615337_616246_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616300_617266_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617340_619002_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619073_619784_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619750_619915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619932_620883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621581_621965_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622022_622625_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622642_623044_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|623159_624071_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624067_624649_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625443_626178_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626218_627268_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627415_627994_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628380_629358_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629451_633846_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634046_634895_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635053_635866_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635921_636872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636970_637771_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637832_638216_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638227_639580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639867_640197_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640199_640949_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641131_642052_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642098_642311_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642333_642756_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642772_643873_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643969_645487_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645562_646402_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646423_647296_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647386_648481_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648774_649725_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649799_650741_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	656065	702256	4108658	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656065_657091_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657131_657371_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657440_659030_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659029_659578_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659658_660231_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660249_661161_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661234_662203_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662325_663399_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663403_665224_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665300_666251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666339_666675_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666808_667459_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667480_668899_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668968_669724_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669692_670451_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670461_671343_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671359_672067_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672069_672828_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673037_674780_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674772_675297_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675336_676131_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676298_677372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677470_678421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678672_678879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678950_679562_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680116_680368_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680360_681050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681067_681289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681306_682257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682896_683382_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683368_684646_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684648_686067_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686095_687151_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|687156_687399_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687521_688124_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688552_689503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690177_690429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690491_690974_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690987_691176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|691175_691571_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691567_691966_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691962_692385_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692392_692893_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|693147_693666_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693675_694005_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694022_694313_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694338_696951_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696960_697320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697387_697921_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697917_698307_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698299_702256_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	708422	762352	4108658	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708422_710153_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710205_710634_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710636_711317_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711316_711775_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711811_712786_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712802_714119_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|714150_714648_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714734_715424_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715423_716473_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716469_717264_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717432_717783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717758_718316_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719445_720396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722533_723763_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723765_725208_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725312_726458_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726489_727287_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727311_728871_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728867_731240_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731349_732453_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732452_733145_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733288_733990_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733974_734352_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735083_736034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736193_737066_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737406_737625_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737664_739044_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739085_740483_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740522_742175_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742178_743063_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743062_744004_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744082_745702_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745868_746684_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746751_747321_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747321_748272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748926_750024_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750057_751323_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751480_752431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752674_753265_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753280_755725_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755844_756816_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756947_757472_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757431_758382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758603_760799_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760871_761279_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761401_762352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	853230	914106	4108658	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|853230_854181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854198_854753_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854754_855189_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855185_855620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855603_856407_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856423_857239_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857235_858051_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858197_858899_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858926_860885_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860967_861918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|862016_862967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863187_863856_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863979_865086_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865098_868212_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868208_869702_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869716_870388_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870431_870926_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871066_871714_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871817_873866_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873862_875875_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875900_877235_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877343_878336_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878402_880487_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880511_881483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881611_882643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|882646_883798_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883968_884892_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884969_885794_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885990_887007_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887203_888187_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889785_891174_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891204_892194_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892304_893537_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893818_894619_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894641_896873_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897660_898107_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898128_898875_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899018_899996_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900629_901241_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901234_902452_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902592_903543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903539_904259_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904379_906539_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906629_906899_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906987_907194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907192_907720_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907738_908518_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908685_909702_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909774_910266_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910276_911992_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|913155_914106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	934853	998446	4108658	transposase	Bacillus_virus(15.38%)	58	NA	NA
WP_005012067.1|934853_935804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935856_936078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936237_936450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936569_937688_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937784_938000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938193_938445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938557_939508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939504_939888_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939942_941757_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941906_942734_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942779_943760_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943756_943969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943965_945147_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945310_946045_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946046_948659_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948794_950708_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951323_951734_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951831_952917_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953015_953966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953962_954937_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955061_955973_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956249_956642_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956771_957722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957751_957934_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958706_959888_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960103_960781_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960777_961503_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961628_962210_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962580_965262_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965264_966395_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966387_967473_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967559_968459_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968455_969784_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969798_970470_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970657_972373_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972374_972734_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972925_973240_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973282_974503_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974499_975441_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975437_976427_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976461_977046_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|977144_978095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|978175_979087_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|979147_980293_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980312_981227_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981298_982048_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982047_982977_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983220_985047_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985129_985771_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985960_986995_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988831_989896_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990693_991602_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993089_994364_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994517_994898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994905_995778_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996083_996464_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996674_997400_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997495_998446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1024558	1082643	4108658	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1024558_1025509_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025607_1026348_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026542_1028579_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028596_1029607_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029724_1030918_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030947_1031721_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031717_1032908_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032933_1033872_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033868_1036217_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036371_1037013_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038342_1038495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038526_1039075_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039093_1039579_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039756_1040695_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040697_1041015_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041060_1042005_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043685_1044336_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044389_1044725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044721_1045582_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045598_1045880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045953_1046217_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046460_1047411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047709_1048447_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048882_1049206_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049240_1049801_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049921_1050797_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050809_1051757_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051858_1052152_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052178_1054236_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054250_1054751_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054824_1056531_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057394_1058447_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058499_1058889_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058897_1059530_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059629_1060646_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061476_1062484_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062480_1064124_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064120_1065008_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1065148_1065622_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065611_1066634_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066630_1068058_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068995_1070012_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070344_1071280_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071329_1073210_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073276_1073621_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073765_1074902_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074898_1075972_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076129_1077566_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077656_1078298_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078633_1079650_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081692_1082643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1086689	1236384	4108658	transposase,holin,tRNA	Planktothrix_phage(12.5%)	114	NA	NA
WP_003819794.1|1086689_1087103_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087104_1087464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087506_1089051_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089134_1089965_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089999_1091154_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091196_1092069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092185_1094474_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095680_1096145_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096171_1097122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1097139_1097277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097489_1098266_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098310_1099168_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099189_1100206_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100340_1101381_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101575_1103657_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103892_1105386_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105616_1106411_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106631_1107990_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107986_1108829_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108847_1110734_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110675_1110927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110971_1111604_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111622_1112225_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112376_1113327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113907_1114615_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114973_1115960_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116099_1117113_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117109_1118060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118077_1118218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1118172_1118631_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118667_1119981_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119998_1120370_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120366_1121830_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121970_1122699_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122680_1125530_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125742_1126693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126860_1127685_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127684_1128563_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129467_1130583_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130611_1131406_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131402_1133268_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133346_1133979_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133975_1134278_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134320_1135841_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135847_1136603_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136632_1137737_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137839_1139540_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139521_1140499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140508_1141789_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141781_1142477_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142510_1143338_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143619_1146850_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_162290921.1|1146942_1147296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930196.1|1147586_1151513_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153412_1155209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155208_1156177_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156246_1157092_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1157159_1157714_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157760_1158711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158809_1159442_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159606_1161889_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162043_1164740_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164865_1165354_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167764_1170635_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170680_1171895_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172124_1173552_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173649_1174741_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174753_1175512_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175599_1176502_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176498_1177449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177578_1178562_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178616_1179339_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180817_1182173_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182253_1184629_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184793_1186869_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186930_1187725_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187832_1188795_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188782_1189538_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189645_1191283_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191350_1192088_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192190_1192766_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192938_1193475_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193507_1193822_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193837_1194683_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194721_1196101_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196178_1197060_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1197158_1198109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198105_1198516_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198623_1199478_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199470_1200433_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200478_1201603_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201708_1202587_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202711_1203491_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203644_1205066_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205500_1207198_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207424_1208366_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208692_1209439_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209446_1210373_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210494_1211412_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211451_1212405_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212429_1213008_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214681_1215290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215367_1215721_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215804_1216794_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216790_1216979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216996_1217947_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218033_1218984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218980_1219931_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220191_1221220_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221299_1222598_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222594_1223176_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223488_1227535_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227775_1235437_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235433_1236384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1270859	1328070	4108658	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270859_1271810_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275556_1276168_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276390_1277851_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277947_1279540_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279893_1280151_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1280152_1281493_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281588_1282278_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282290_1283721_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285445_1286267_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286277_1287849_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287877_1288855_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288881_1289685_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289681_1290476_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290483_1291719_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291732_1292146_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292895_1293846_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294467_1296195_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296306_1297665_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297721_1297940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297957_1298908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298948_1300019_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300041_1300920_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301091_1302063_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302225_1303068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303229_1303910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303903_1305073_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1305069_1306101_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1306168_1307386_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307420_1308953_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309033_1309657_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309687_1310299_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310334_1310805_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311236_1312241_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312277_1313792_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313795_1314755_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314783_1315587_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315588_1317223_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317306_1318368_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318566_1318836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318839_1319364_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319779_1320730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320726_1321761_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321869_1322508_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322802_1323030_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1323152_1323866_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324110_1325061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325200_1325446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325560_1327009_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1327119_1328070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1418303	1470456	4108658	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418303_1419254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419271_1419424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419420_1419774_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419786_1420149_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420190_1420616_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420818_1422075_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422273_1423254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423403_1424645_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424743_1425694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425702_1426398_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429219_1429819_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429829_1431995_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432018_1433803_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433802_1433892_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434586_1434859_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434858_1436925_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436921_1437872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437970_1438921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439036_1439369_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439365_1440052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440038_1440998_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441030_1443400_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443399_1444032_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444133_1445474_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445520_1446876_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1447166_1447403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447590_1447908_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448180_1448696_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448966_1449722_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450060_1450267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450274_1450934_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451228_1453433_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453543_1454767_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454889_1455864_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455931_1457125_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1457139_1457940_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457936_1459793_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459789_1460395_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460413_1461799_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462524_1463751_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463839_1464622_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464720_1465671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465697_1466471_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466482_1467724_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469505_1470456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1514381	1582467	4108658	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514381_1514870_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514987_1515566_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515671_1516040_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1516138_1517089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517095_1518208_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518894_1520097_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520300_1522961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522973_1526378_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527045_1529271_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529317_1529644_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529694_1530303_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530401_1531352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531421_1532186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532182_1532719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532885_1533737_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533796_1534423_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534419_1535370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535468_1536581_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536570_1537572_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537677_1539189_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539185_1540490_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540601_1541162_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541429_1541984_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542439_1542655_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542909_1545507_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545503_1546691_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547349_1547964_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548052_1549174_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549191_1550097_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550989_1551940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552121_1552874_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552942_1553602_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553598_1554327_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554339_1556619_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556643_1556847_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556888_1557521_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557656_1558574_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558570_1559284_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559521_1560292_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560296_1560896_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1561140_1562631_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562689_1562974_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563539_1564466_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564602_1565343_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565509_1566886_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567067_1567973_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569624_1571427_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571544_1572195_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572293_1573244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573265_1574486_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574671_1576084_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1576147_1577215_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577214_1578702_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578711_1579656_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579815_1580514_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580591_1581497_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581516_1582467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1618416	1674007	4108658	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618416_1619367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619425_1620199_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620191_1621748_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621744_1622695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624021_1624624_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624863_1625565_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625558_1626341_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626525_1627476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627574_1628312_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628501_1629260_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629306_1630296_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630473_1631442_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632981_1633950_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633958_1634900_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635373_1636384_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636374_1637889_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637885_1639232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639234_1640269_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640318_1641944_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642496_1643447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643551_1644499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644552_1646367_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646359_1647034_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1647163_1650238_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650251_1650551_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650865_1651489_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651732_1652602_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652579_1653524_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653609_1654536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654648_1655428_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655418_1656615_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656645_1657596_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657817_1658507_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658571_1659327_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659378_1660371_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660380_1661334_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661449_1662412_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663813_1664242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664238_1665189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665482_1666205_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666643_1667831_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667834_1668185_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669934_1670906_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670919_1671633_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671637_1672555_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672661_1672958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673056_1674007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1831774	1891044	4108658	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831774_1832725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832849_1833659_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833859_1834810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836083_1837301_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838357_1839260_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839336_1840209_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840339_1840708_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840765_1841812_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842007_1843264_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843268_1844606_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844755_1845712_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845814_1846747_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846862_1847183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847175_1847535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847582_1849157_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849209_1850154_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850171_1851002_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850994_1852629_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852625_1853981_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854887_1856465_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856468_1857743_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857840_1858215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859930_1861064_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861101_1861707_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861703_1862522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862593_1865218_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865204_1865459_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865525_1866107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866410_1866671_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866836_1867460_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867459_1868233_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868229_1869438_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869463_1869937_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870010_1870961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871059_1872010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872108_1873458_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874223_1874979_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875071_1877954_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878276_1878702_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878729_1879878_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879874_1880381_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880396_1881683_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881732_1883028_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883029_1883668_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883673_1884831_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884857_1886213_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886216_1887287_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887425_1887662_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887749_1888856_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888821_1890126_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1890144_1891044_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1901284	1945607	4108658	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901284_1902235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902333_1903284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903483_1904569_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904584_1905346_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905342_1906266_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906364_1906889_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906897_1907641_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907736_1907976_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907989_1908142_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908227_1909718_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909809_1910748_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910744_1910921_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910923_1911586_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913207_1913351_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913347_1914322_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914216_1914471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914488_1915439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915435_1916710_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916813_1918007_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918003_1918657_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918653_1920090_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920077_1920437_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921251_1921392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921409_1922360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923405_1925271_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925528_1927049_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1927136_1927787_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928735_1930031_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930052_1930937_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931035_1931911_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931900_1932257_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932387_1933362_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933491_1933671_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933768_1934293_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934303_1935140_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935252_1935624_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935620_1936172_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936187_1937879_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937927_1938608_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938855_1939320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939489_1940419_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940431_1941079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1941152_1942970_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943053_1944004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944656_1945607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	1975380	2039749	4108658	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975380_1976331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976552_1977503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977601_1978567_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978704_1979604_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982198_1983686_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983696_1984893_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984965_1986285_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986281_1987157_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987187_1988336_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988353_1988668_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988689_1989412_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989411_1990230_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990234_1990762_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990767_1992024_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992382_1993522_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993599_1994472_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995342_1996293_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996252_1996888_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997247_1998570_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998888_1999710_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2001134_2001707_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001746_2003576_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003538_2004597_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004634_2005096_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005180_2005927_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007417_2010648_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010714_2012046_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012298_2012673_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012775_2013954_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013964_2014555_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014665_2015472_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015497_2016292_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017292_2018267_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018425_2018938_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2019094_2020066_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021810_2022617_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022613_2023915_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023865_2024630_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024743_2025514_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025598_2026786_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026858_2027233_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027333_2028596_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028592_2029450_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029622_2030624_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2031075_2032026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033589_2034741_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2035109_2035346_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035409_2035577_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035690_2037586_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037749_2038700_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038798_2039749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	2171278	2220931	4108658	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171278_2172229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172327_2174322_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174381_2175347_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175336_2178198_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178200_2178707_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178811_2180020_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180021_2180960_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181121_2181595_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181591_2182542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182652_2183093_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183221_2184451_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184489_2185311_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185364_2186516_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186607_2187096_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189646_2192196_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192266_2194840_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195105_2195306_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195337_2195499_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195556_2195895_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196043_2196994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197768_2198437_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198418_2200374_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200616_2201366_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201378_2202242_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202245_2203661_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203794_2204523_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204661_2204862_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205037_2205436_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205459_2206860_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206978_2207731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2208019_2208697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208723_2209503_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209499_2210384_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210401_2211181_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2211165_2211924_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2212061_2212697_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212964_2213981_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214078_2215119_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215253_2216546_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217905_2218289_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218306_2218894_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218931_2219882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219980_2220931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	2512049	2550639	4108658	transposase,protease	Planktothrix_phage(14.29%)	36	NA	NA
WP_005012808.1|2512049_2513000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2513017_2513182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2513178_2514873_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514869_2515955_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2516002_2516902_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516912_2517557_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518578_2521821_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521831_2522986_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523212_2524175_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524273_2525224_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525322_2526273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2526282_2526972_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2527031_2527469_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2527514_2528408_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2528455_2529628_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2529624_2530779_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2530975_2531326_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2531315_2531750_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2531766_2532717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2532864_2533332_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2533312_2534470_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2534535_2535462_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2535579_2536530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811761.1|2536564_2536990_-	membrane protein	NA	NA	NA	NA	NA
WP_010930359.1|2537113_2537833_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_010930358.1|2537900_2540264_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930357.1|2540425_2541253_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003811768.1|2541264_2542038_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_003811770.1|2542034_2542640_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_010930356.1|2542626_2543808_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010930355.1|2543804_2544599_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|2544599_2545055_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930354.1|2545126_2546218_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811782.1|2546226_2546790_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930353.1|2546915_2549252_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_010930352.1|2549304_2550639_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 23
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	2578808	2645308	4108658	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578808_2579759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2580128_2580701_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580703_2581714_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581706_2582207_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582217_2582559_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2582627_2583362_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583378_2583648_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583670_2584459_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584505_2585522_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585738_2587181_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587359_2588979_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2589099_2590920_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2590998_2592531_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2592564_2594211_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594280_2595303_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595320_2596454_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596456_2597146_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2597145_2597931_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597974_2598739_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598777_2600199_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600264_2600969_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2601016_2601436_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601448_2601856_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2602039_2602750_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602876_2603167_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603184_2603667_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2608172_2609327_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609632_2610649_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610895_2611684_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611750_2612431_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612427_2613198_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2613296_2614247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614302_2615220_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615230_2616409_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616428_2617424_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2619012_2619621_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619608_2620649_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620666_2621629_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621625_2622819_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622815_2623613_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623638_2624625_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624643_2626683_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2626884_2627565_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627578_2628490_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628486_2629065_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629203_2630109_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2630116_2633536_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633523_2636124_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2637079_2637712_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2638105_2638864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2638860_2640063_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640250_2641201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2642108_2643254_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643240_2643996_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2644112_2644292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644357_2645308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	2673423	2710835	4108658	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2673423_2674374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2674472_2675423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2675515_2676055_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2676161_2676506_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2676563_2678012_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2678199_2678535_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2680162_2681341_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2681423_2681924_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2682033_2682735_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2682746_2683211_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2683225_2683501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2683497_2684274_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2684302_2685130_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2685255_2685726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2685852_2686746_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2686793_2687975_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2687987_2688803_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2688936_2689464_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2689460_2689958_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2690105_2690483_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2690704_2691655_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2691753_2692365_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2692599_2693727_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2693837_2694926_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2694978_2695830_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2695849_2696731_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2696907_2698221_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2698431_2699265_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2699261_2699843_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_010930800.1|2700196_2701147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2701162_2702278_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2702380_2703307_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2703306_2704545_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2704541_2705309_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2705309_2706011_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2706092_2706539_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2707428_2708067_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2708835_2709786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2709884_2710835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	2809962	2864479	4108658	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2809962_2810913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811241_2811847_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811900_2813214_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813288_2813759_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813758_2814547_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814557_2816210_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816297_2817248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818409_2818916_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818912_2819677_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819692_2819977_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820041_2821031_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821202_2822132_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822103_2822790_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822823_2823369_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823413_2824679_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824675_2825578_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826759_2827704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827798_2829316_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829357_2830986_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831093_2831975_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835087_2835462_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835486_2835825_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835868_2837503_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837541_2838888_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838995_2840417_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840486_2841071_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2841173_2842124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842258_2843365_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843375_2844473_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844617_2845823_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845829_2846351_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846347_2846830_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846835_2847087_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847067_2847553_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847688_2851150_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851167_2852052_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852061_2852493_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852739_2853243_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853320_2854721_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854795_2855671_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855667_2856675_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2857142_2857448_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857538_2858129_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858319_2859336_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859527_2861864_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861946_2862381_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862479_2863430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863528_2864479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	2872504	2929289	4108658	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2872504_2873455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2875161_2875428_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2876135_2876474_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881026_2881629_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881725_2883015_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883072_2883804_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883800_2884604_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884600_2885689_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885685_2886615_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886763_2887909_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887930_2888881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_158322896.1|2888898_2889057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889211_2893033_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893189_2893858_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893862_2895536_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895554_2896874_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896878_2899194_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899249_2901418_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901414_2906595_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906693_2907008_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907235_2907481_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907575_2908094_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908193_2909399_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909514_2910912_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911028_2911607_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911679_2913071_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913238_2914189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914469_2915090_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915086_2915500_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915496_2916540_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916595_2916784_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916793_2917558_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917648_2918305_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918396_2919155_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919180_2920782_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920982_2921987_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922087_2922351_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922468_2923245_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923835_2924786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927169_2928282_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928338_2929289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	2959675	3003366	4108658	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2959675_2960626_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960643_2960793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960746_2961643_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963920_2966146_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966310_2967399_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967355_2968009_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968056_2968854_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969385_2970336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970416_2971565_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971621_2972572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972670_2972976_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973004_2973439_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973440_2974685_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974681_2975392_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975406_2976318_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976680_2977085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977081_2977540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977546_2978455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978451_2979318_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979304_2980132_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2980142_2981270_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982347_2983586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983627_2984890_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984896_2985649_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985700_2985886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2986161_2986626_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986657_2987317_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987461_2989570_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989566_2990517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990620_2991241_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991344_2992085_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993219_2994344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994389_2994758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994999_2995950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996985_2997528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997725_2997896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997913_2998864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998860_2999769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999895_3000732_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001244_3002354_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002415_3003366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	3383312	3437053	4108658	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3383312_3384263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384667_3385312_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385336_3385921_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386021_3386639_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386641_3388357_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388353_3388662_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388678_3389296_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389340_3389643_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389743_3390598_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390785_3391010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391179_3391452_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391869_3392277_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392646_3393441_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393541_3394777_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394845_3395862_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395873_3397250_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397246_3398443_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398439_3399978_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399974_3401234_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403174_3404125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404891_3405986_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405978_3407313_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407266_3407950_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3407975_3409139_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3409135_3410137_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3410136_3411009_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411005_3411755_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411751_3412543_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412539_3413679_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413954_3414740_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414773_3415556_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415559_3415949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417088_3417952_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417987_3419076_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419072_3420023_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420376_3423355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424281_3425160_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427108_3428059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428055_3428523_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428565_3429336_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429356_3430157_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430167_3431577_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431671_3432457_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432696_3433713_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433820_3434213_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434350_3435031_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435035_3436007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436102_3437053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	3443208	3502506	4108658	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3443208_3444972_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445083_3445962_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446074_3446890_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446893_3447145_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447229_3448246_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448576_3448798_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3451158_3452076_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452573_3453782_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453861_3455433_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455550_3456486_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456674_3457619_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458186_3463904_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463909_3465037_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465092_3465719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465990_3467007_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467102_3467813_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467809_3468799_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468894_3470526_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470528_3471266_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471421_3472294_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472643_3473783_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473779_3474439_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474510_3475143_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475172_3475691_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475701_3476811_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476857_3477712_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477713_3478616_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479838_3480789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482543_3483533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483708_3484497_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484493_3485525_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485543_3486107_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3486162_3487683_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487946_3488651_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488658_3489387_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489501_3489876_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489918_3491208_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491204_3492374_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492370_3493210_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493269_3494205_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494217_3495168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495266_3496229_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496260_3496620_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496744_3497647_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497648_3499421_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499455_3500232_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501555_3502506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	3517444	3575517	4108658	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517444_3518395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518523_3519657_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519700_3520606_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520608_3522309_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522305_3523226_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523233_3524211_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524269_3525304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3527278_3527515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527641_3528505_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528593_3529415_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529494_3530232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530228_3531221_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3531373_3531997_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532041_3533190_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535513_3536464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536804_3537755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537853_3538804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539100_3539598_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539640_3541416_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541423_3542290_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542296_3543031_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544200_3544995_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545284_3545875_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545908_3547237_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547311_3548457_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548568_3549567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549529_3549964_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551480_3552365_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552361_3553567_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553563_3554424_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554536_3556327_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3556367_3557012_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557033_3557342_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557507_3558794_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560227_3561178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3563129_3564344_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564449_3565439_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565435_3566044_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566056_3566686_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566682_3567303_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567334_3568126_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568977_3569433_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569451_3570378_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570431_3571718_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572648_3573521_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573517_3574468_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574566_3575517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP013907	Bordetella pertussis strain J277 chromosome, complete genome	4108658	4007726	4072638	4108658	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4007726_4008212_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008300_4008438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008430_4009411_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009677_4010487_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010526_4011207_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011200_4011659_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011670_4012033_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4012115_4012799_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012854_4013163_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4013181_4013496_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013492_4015967_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015974_4017366_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017362_4017548_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017526_4018228_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018224_4019046_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019026_4020151_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4020143_4021163_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021368_4022259_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022503_4023295_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023377_4023752_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023729_4025139_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4025131_4026514_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026848_4028453_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028530_4029502_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029512_4030439_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030829_4031780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031949_4033176_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033375_4034242_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034234_4035197_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035297_4036248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036346_4037297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037395_4038346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038342_4039836_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039832_4042940_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042936_4046005_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046001_4047252_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047432_4048185_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048226_4048871_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048879_4049860_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049959_4050703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050785_4051133_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051230_4052073_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4052117_4053005_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053031_4053220_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053317_4054775_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054761_4056288_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056306_4056774_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056773_4057796_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057916_4058657_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058711_4059812_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059813_4061004_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4061123_4062140_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062458_4063130_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4063126_4064035_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064246_4064894_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068754_4069822_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069832_4070642_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4070731_4071505_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4071505_4071670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4071687_4072638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
