The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	0	59497	4110596	tRNA,transposase	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	70134	123122	4110596	tRNA,transposase	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	165943	226454	4110596	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212274_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220104_222948_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	234386	298126	4110596	tRNA,transposase	Bacillus_phage(20.0%)	53	NA	NA
WP_010929969.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|279239_280190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|282634_283369_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|283778_283958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|284148_285462_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|285477_286989_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|286985_288191_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|288386_289364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|289456_289951_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|290080_291139_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|291135_292755_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_157734656.1|292714_292984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929784.1|292942_294046_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|294042_294498_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|294503_295427_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|295516_296176_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|296172_297087_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|297175_298126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	379177	431316	4110596	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	50	NA	NA
WP_005013747.1|379177_380128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|380250_380979_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|381075_382254_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|382250_383084_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|383120_383861_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|383980_385156_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|385152_386106_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|386119_386521_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|386513_387119_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|387206_387371_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|387487_388336_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|388332_388986_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|389002_390286_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|390525_392151_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|392244_392646_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|392670_393105_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|393106_394756_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|394796_395966_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|395968_396832_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|400195_400900_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|400893_401688_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|401684_402650_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|402653_403574_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|403670_404834_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|405056_405947_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|405950_406454_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|406496_407495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|407491_408442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|408530_408818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|409009_409960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|410019_410580_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|412082_412964_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|413077_414280_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|414408_416268_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|416345_417155_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|417225_418227_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|418258_419119_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|419318_420323_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|420319_421906_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|421914_422841_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|422863_423490_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|423588_424539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|424535_425672_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|425725_426502_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|426526_426985_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|427124_427766_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|427830_429213_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|429238_430087_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|430245_430857_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|430866_431316_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
>prophage 6
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	592519	653711	4110596	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|592519_593470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|593945_594836_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|594832_595654_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|595854_596346_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|596364_597438_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|597484_598588_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|598663_599284_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|599304_599814_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|599868_600120_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|600183_601317_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|601324_601711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|601707_604227_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|604655_604994_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|604990_605497_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|605558_606359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|606469_607411_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|607504_609040_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|610719_612570_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|612573_613407_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|613406_614348_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|614599_615571_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|615712_618001_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|618307_619216_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|619270_620236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|620310_621972_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|622043_622754_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|622720_622885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|622902_623853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|624551_624935_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|624992_625595_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|625612_626014_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|626129_627041_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|627037_627619_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|628413_629148_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|629188_630238_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|630385_630964_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|631350_632328_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|632421_636816_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|637016_637865_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|638023_638836_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|638891_639842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|639940_640741_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|640802_641186_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|641197_642550_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|642837_643167_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|643169_643919_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|644101_645022_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|645068_645281_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|645303_645726_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|645742_646843_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|646939_648457_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|648532_649372_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|649393_650266_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|650356_651451_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|651744_652695_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|652769_653711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	659035	705226	4110596	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|659035_660061_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|660101_660341_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|660410_662000_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|661999_662548_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|662628_663201_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|663219_664131_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|664204_665173_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|665295_666369_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|666373_668194_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|668270_669221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|669309_669645_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|669778_670429_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|670450_671869_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|671938_672694_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|672662_673421_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|673431_674313_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|674329_675037_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|675039_675798_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|676007_677750_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|677742_678267_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|678306_679101_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|679268_680342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|680440_681391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|681642_681849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|681920_682532_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|683086_683338_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|683330_684020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|684037_684259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|684276_685227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|685866_686352_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|686338_687616_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|687618_689037_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|689065_690121_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|690126_690369_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|690491_691094_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|691522_692473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|693147_693399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|693461_693944_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|693957_694146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|694145_694541_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|694537_694936_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|694932_695355_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|695362_695863_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|696117_696636_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696645_696975_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|696992_697283_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697308_699921_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699930_700290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|700357_700891_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700887_701277_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701269_705226_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	711392	765322	4110596	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|711392_713123_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713175_713604_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713606_714287_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714286_714745_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714781_715756_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715772_717089_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717120_717618_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717704_718394_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718393_719443_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719439_720234_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720402_720753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720728_721286_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|722415_723366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|725503_726733_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726735_728178_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728282_729428_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729459_730257_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730281_731841_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731837_734210_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|734319_735423_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735422_736115_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736258_736960_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736944_737322_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738053_739004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739163_740036_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740376_740595_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740634_742014_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742055_743453_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743492_745145_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745148_746033_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746032_746974_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747052_748672_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748838_749654_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749721_750291_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750291_751242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751896_752994_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753027_754293_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|754450_755401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755644_756235_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756250_758695_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758814_759786_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759917_760442_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760401_761352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761573_763769_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|763841_764249_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|764371_765322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	887911	955887	4110596	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887911_888928_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889124_890108_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891706_893095_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893125_894115_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894225_895458_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895739_896540_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896562_898794_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899581_900028_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900049_900796_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900939_901917_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902550_903162_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903155_904373_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904513_905464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905460_906180_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906300_908460_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908550_908820_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908908_909115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909113_909641_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909659_910439_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910606_911623_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911695_912187_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912197_913913_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915076_916027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916023_917856_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918254_918914_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919441_920122_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920403_921120_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921134_922436_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924580_927469_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927692_929045_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929073_929595_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929591_931046_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931080_931329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931434_932310_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932335_933391_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933403_934195_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934227_935598_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936774_937725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937777_937999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938158_938371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938490_939609_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939705_939921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940114_940366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940478_941429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941425_941809_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941863_943678_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943827_944655_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944700_945681_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945677_945890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945886_947068_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947231_947966_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947967_950580_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950715_952629_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953244_953655_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953752_954838_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954936_955887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	999416	1071934	4110596	tRNA,transposase	Enterococcus_phage(14.29%)	59	NA	NA
WP_010929591.1|999416_1000367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000471_1001521_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1001658_1002675_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004183_1004756_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004815_1005547_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005598_1006516_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007323_1010503_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011952_1012204_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012349_1012964_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013150_1015211_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015340_1016192_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016188_1016815_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016811_1018566_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018858_1021564_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021576_1023238_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023250_1025041_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025262_1026438_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_023852617.1|1026480_1027431_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027529_1028270_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028464_1030501_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030518_1031529_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031646_1032840_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032869_1033643_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033639_1034830_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034855_1035794_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035790_1038139_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038293_1038935_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040264_1040417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040448_1040997_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041015_1041501_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041678_1042617_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042619_1042937_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042982_1043927_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045607_1046258_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046311_1046647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046643_1047504_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047520_1047802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047875_1048139_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048382_1049333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049631_1050369_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050804_1051128_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051162_1051723_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051843_1052719_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052731_1053679_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053780_1054074_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054100_1056158_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056172_1056673_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056746_1058453_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059316_1060369_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060421_1060811_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060819_1061452_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061551_1062568_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063398_1064406_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064402_1066046_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066042_1066930_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067070_1067544_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067533_1068556_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068552_1069980_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070917_1071934_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	1075687	1138813	4110596	holin,tRNA,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1075687_1076824_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076820_1077894_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078051_1079488_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079578_1080220_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080556_1081573_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083513_1084464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085768_1087190_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087453_1088170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088254_1088572_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088612_1089026_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089027_1089387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089429_1090974_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091057_1091888_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091922_1093077_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093119_1093992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094108_1096397_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097603_1098068_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098094_1099045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099062_1099200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099412_1100189_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_077108134.1|1100233_1101091_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101112_1102129_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102263_1103304_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103498_1105580_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105815_1107309_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107539_1108334_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108554_1109913_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109909_1110752_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110770_1112657_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112598_1112850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112894_1113527_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113545_1114148_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1114299_1115250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115830_1116538_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116896_1117883_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118022_1119036_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119032_1119983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1120000_1120141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120095_1120554_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120590_1121904_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121921_1122293_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122289_1123753_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123893_1124622_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124603_1127453_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127665_1128616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128783_1129608_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129607_1130486_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1132439_1133555_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1133583_1134378_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1134374_1136240_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1136318_1136951_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1136947_1137250_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1137292_1138813_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	1320055	1388542	4110596	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1320055_1321006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321774_1322413_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1323302_1323749_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1323830_1324532_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1324532_1325300_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1325296_1326535_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1326534_1327461_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1327563_1328679_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1328694_1329645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329998_1330580_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1330576_1331410_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1331620_1332934_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1333110_1333992_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1334011_1334863_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334915_1336004_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1336114_1337242_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1337476_1338088_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1338186_1339137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1339358_1339736_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339883_1340381_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1340377_1340905_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1341038_1341854_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1341866_1343048_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1343095_1343989_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1344115_1344586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1344711_1345539_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1345567_1346344_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1346340_1346616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1346630_1347095_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1347106_1347808_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1347917_1348418_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1348500_1349679_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1351306_1351642_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351829_1353278_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1353335_1353680_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353786_1354326_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1354418_1355369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1355386_1355626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356107_1356539_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1356720_1357125_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358361_1358685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358687_1359575_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359607_1360033_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360104_1360458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360697_1361204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361242_1362574_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362633_1363449_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363445_1364300_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367362_1369906_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371272_1373027_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373023_1375144_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375148_1377344_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377340_1380682_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383484_1384435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1384500_1384680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1384796_1385552_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1385538_1386684_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1387591_1388542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	1449033	1504521	4110596	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449033_1449984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451185_1451632_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451624_1453100_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453096_1453852_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453844_1454855_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454844_1456521_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456833_1457166_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457179_1457575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457584_1457911_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457907_1458234_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458160_1459183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459179_1459530_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459577_1460006_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460013_1461387_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461527_1461905_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462167_1463475_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463535_1464366_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464362_1464851_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464892_1466413_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466456_1466933_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467736_1470334_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470363_1471185_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471911_1472661_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472844_1473723_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473820_1474537_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474551_1475112_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475278_1476043_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476062_1476920_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476916_1478116_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478155_1479490_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479542_1481879_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1482004_1482568_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482576_1483668_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483739_1484195_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484195_1484990_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484986_1486168_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486154_1486760_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486756_1487530_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487541_1488369_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488530_1490894_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490961_1491681_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491804_1492230_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492264_1493215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493332_1494259_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494324_1495482_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495462_1495930_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1496077_1497028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497044_1497479_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497468_1497819_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498015_1499170_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499166_1500339_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500386_1501280_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501325_1501763_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501822_1502512_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502521_1503472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1503570_1504521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	1695450	1759028	4110596	protease,transposase	Klebsiella_phage(11.11%)	49	NA	NA
WP_005012808.1|1695450_1696401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930866.1|1702879_1705627_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1705647_1706271_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1706282_1706753_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1706764_1707151_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1707212_1707806_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1707796_1708708_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_023853662.1|1708723_1710034_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1710131_1710863_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|1711017_1712538_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930859.1|1712598_1713954_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1713988_1715314_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1715495_1716428_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1716438_1717932_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1717928_1718852_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1718854_1720117_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1720136_1721150_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1721222_1721513_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1721542_1722817_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_162268683.1|1722798_1722942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1722959_1723910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1723906_1725544_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1725548_1726388_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023997180.1|1726384_1727392_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1727508_1729083_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1729502_1731047_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1731151_1732219_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1732237_1733824_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1733820_1735011_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1736583_1737072_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1737131_1737989_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1738051_1739002_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1739064_1740054_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1740128_1741010_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1742067_1742919_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1742935_1743505_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930839.1|1743535_1744399_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1744558_1745635_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1745699_1747397_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1747413_1748244_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1748272_1749295_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1749824_1750775_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1750873_1751824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1751820_1753143_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1753243_1753561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1753694_1755008_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1755038_1756676_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1757299_1757776_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1758077_1759028_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	1798141	1846145	4110596	tRNA,transposase	Moraxella_phage(18.18%)	41	NA	NA
WP_010930522.1|1798141_1799092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1799190_1801791_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1801897_1802902_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1803010_1804351_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1804391_1805420_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1805615_1806161_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1806157_1806718_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1806816_1807767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1807804_1808392_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1808409_1808793_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1810152_1811445_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1811579_1812620_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1812717_1813734_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1814001_1814637_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1814774_1815533_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1815517_1816297_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1816314_1817199_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1817195_1817975_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1818001_1818679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1818967_1819720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1819838_1821239_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1821262_1821661_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1821836_1822037_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1822175_1822904_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816518.1|1824445_1825309_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1825321_1826071_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1826313_1828269_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1828250_1828919_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1829693_1830644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1830742_1831693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1831841_1832180_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1832237_1832399_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1832430_1832631_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1832896_1835470_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1835540_1838090_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1840640_1841129_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1841220_1842372_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1842425_1843247_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1843285_1844515_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1844643_1845084_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1845194_1846145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	1907707	1966977	4110596	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1907707_1908658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1908782_1909592_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1909792_1910743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1912016_1913234_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1914290_1915193_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1915269_1916142_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1916272_1916641_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1916698_1917745_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1917940_1919197_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1919201_1920539_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1920688_1921645_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1921747_1922680_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1922795_1923116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1923108_1923468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1923515_1925090_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1925142_1926087_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1926104_1926935_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1926927_1928562_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1928558_1929914_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1930820_1932398_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1932401_1933676_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1933773_1934148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1935863_1936997_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1937034_1937640_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1937636_1938455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1938526_1941151_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1941137_1941392_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1941458_1942040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1942343_1942604_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1942769_1943393_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1943392_1944166_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1944162_1945371_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1945396_1945870_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1945943_1946894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1946992_1947943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1948041_1949391_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1950156_1950912_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1951004_1953887_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1954209_1954635_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1954662_1955811_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1955807_1956314_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1956329_1957616_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1957665_1958961_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1958962_1959601_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1959606_1960764_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1960790_1962146_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1962149_1963220_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1963358_1963595_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1963682_1964789_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1964754_1966059_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1966077_1966977_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	1977217	2021540	4110596	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1977217_1978168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1978266_1979217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1979416_1980502_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1980517_1981279_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1981275_1982199_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1982297_1982822_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1982830_1983574_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1983669_1983909_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1983922_1984075_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1984160_1985651_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1985742_1986681_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1986677_1986854_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1986856_1987519_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1989140_1989284_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1989280_1990255_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1990149_1990404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1990421_1991372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1991368_1992643_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1992746_1993940_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1993936_1994590_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1994586_1996023_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1996010_1996370_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1997184_1997325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1997342_1998293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1999338_2001204_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2001461_2002982_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2003069_2003720_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2004668_2005964_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2005985_2006870_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2006968_2007844_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2007833_2008190_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2008320_2009295_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2009424_2009604_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2009701_2010226_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2010236_2011073_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2011185_2011557_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2011553_2012105_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2012120_2013812_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2013860_2014541_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2014788_2015253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2015422_2016352_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2016364_2017012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2017085_2018903_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2018986_2019937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2020589_2021540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	2034746	2072236	4110596	transposase	Erysipelothrix_phage(100.0%)	35	NA	NA
WP_010930153.1|2034746_2035763_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2035905_2037258_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2037432_2037729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2037827_2038778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2038876_2039827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|2040312_2040489_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2041173_2042145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2042148_2043003_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2043021_2043843_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2043874_2044669_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2044717_2045323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2045280_2046114_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2046399_2047905_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2047946_2048729_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2048798_2049245_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2049241_2050468_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2050460_2050865_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2051024_2051327_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|2051323_2052274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2052495_2053446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2053544_2054510_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2054647_2055547_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2058141_2059629_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2059639_2060836_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2060908_2062228_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2062224_2063100_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2063130_2064279_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2064296_2064611_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2064632_2065355_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2065354_2066173_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2066177_2066705_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2066710_2067967_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2068325_2069465_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2069542_2070415_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2071285_2072236_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	2301111	2362459	4110596	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2301111_2302062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2302178_2302898_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2303070_2304057_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2304057_2304540_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2304543_2305827_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2305823_2306762_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2306758_2308468_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2308477_2309725_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2311335_2312625_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2313762_2314536_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2315197_2315941_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2316015_2316756_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2316951_2317788_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2317838_2318609_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2318658_2319711_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2319707_2320334_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2320330_2321365_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2321543_2322560_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2322658_2323609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2326349_2327639_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2327757_2328195_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2328238_2329447_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2329593_2330058_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2330081_2331032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2332016_2332790_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2332786_2333785_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2333869_2334646_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2334801_2336406_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2336786_2337911_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2338037_2338661_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2338657_2340559_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2340607_2341402_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2341414_2342416_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2342412_2342862_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2342911_2343760_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2343857_2344400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2344443_2345394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2345549_2345876_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2345872_2346154_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2346153_2346633_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2346629_2348258_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2348254_2348599_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2348598_2351532_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2352690_2353641_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2353739_2354036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2354142_2355060_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2355064_2355778_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2355791_2356763_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2358512_2358863_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2358866_2360054_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2360492_2361215_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2361508_2362459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	2383250	2454404	4110596	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2383250_2384201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2384753_2386379_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2386428_2387463_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2387465_2388812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2388808_2390323_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2390313_2391324_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2391797_2392739_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2392747_2393716_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2395255_2396224_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2396401_2397391_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2397437_2398196_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2398385_2399123_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010929584.1|2399221_2400172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2400356_2401139_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2401132_2401834_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2402073_2402676_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2404002_2404953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2404949_2406506_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2406498_2407272_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2407330_2408281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2408362_2409538_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2409551_2411609_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2411605_2412631_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2412642_2413932_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2413954_2415052_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2415048_2415939_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2415935_2418020_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2418051_2419221_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2419262_2420003_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2420002_2420773_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2421628_2422414_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2422440_2424525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2424692_2426648_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2426971_2427472_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2427570_2429097_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2429234_2430122_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2430136_2431090_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2431141_2433232_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2433247_2433634_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2436327_2437131_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2438424_2439327_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2439391_2440168_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2440489_2441539_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2441662_2443333_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2443337_2444132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2444230_2445181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2445200_2446106_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2446183_2446882_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2447041_2447986_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2447995_2449483_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2449482_2450550_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2450613_2452026_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2452211_2453432_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2453453_2454404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	2539653	2590825	4110596	tRNA,transposase	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2539653_2540604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2540702_2541473_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2541469_2542141_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2542137_2542779_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2542791_2543712_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2543872_2545033_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2545074_2546025_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2546623_2546848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2547012_2548707_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2548828_2549098_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2549213_2549612_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2549622_2550579_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2550715_2551261_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2551281_2553231_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2553618_2554395_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2554400_2554793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2555214_2556165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2556161_2557259_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2557290_2558241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2560022_2561264_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561275_2562049_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562075_2563026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563124_2563907_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563995_2565222_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565947_2567333_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567351_2567957_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567953_2569810_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569806_2570607_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570621_2571815_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571882_2572857_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572979_2574203_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574313_2576518_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576812_2577472_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577479_2577686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578024_2578780_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2579050_2579566_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579838_2580156_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2580343_2580580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580870_2582226_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582272_2583613_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583714_2584347_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2584346_2586716_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586748_2587708_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587694_2588381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2588377_2588710_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588825_2589776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589874_2590825_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	2689119	2729788	4110596	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689119_2690070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690180_2690363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690462_2691059_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691242_2692334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692833_2693244_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2693302_2693632_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693649_2696067_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696079_2697102_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697176_2697536_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697551_2697749_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698084_2699035_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699229_2699679_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699675_2700626_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700736_2702185_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2702299_2702545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702684_2703635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703879_2704593_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704715_2704943_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705237_2705876_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705984_2707019_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707015_2707966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708381_2708906_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708909_2709179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709377_2710439_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710522_2712157_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712158_2712962_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712990_2713950_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713953_2715468_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715504_2716509_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716940_2717411_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717446_2718058_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718088_2718712_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718792_2720325_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2720359_2721577_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721644_2722676_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722672_2723842_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723835_2724516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724677_2725520_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725682_2726654_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726825_2727704_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727726_2728797_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728837_2729788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	2785253	2858123	4110596	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785253_2785670_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785780_2786413_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786441_2786885_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786906_2787998_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2788052_2788853_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788988_2789609_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789748_2790222_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791361_2792312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792308_2799970_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800210_2804257_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804569_2805151_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805147_2806446_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806525_2807554_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807814_2808765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808761_2809712_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810028_2810634_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810687_2812001_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812075_2812546_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812545_2813334_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813344_2814997_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815084_2816035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817196_2817703_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817699_2818464_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818479_2818764_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818828_2819818_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819989_2820919_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820890_2821577_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821610_2822156_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822200_2823466_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823462_2824365_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825546_2826491_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826585_2828103_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828144_2829773_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829880_2830762_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833874_2834249_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834273_2834612_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834655_2836290_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836328_2837675_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837782_2839204_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839273_2839858_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839960_2840911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841045_2842152_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842162_2843260_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843404_2844610_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844616_2845138_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845134_2845617_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845622_2845874_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845854_2846340_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846475_2849937_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849954_2850839_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850848_2851280_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851526_2852030_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852107_2853508_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853582_2854458_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854454_2855462_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855929_2856235_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856325_2856916_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857106_2858123_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	2861266	2928076	4110596	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2861266_2862217_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862315_2863266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863262_2864057_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864088_2864793_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864867_2865668_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865664_2866072_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866068_2866710_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866702_2868703_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869963_2871295_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871291_2872242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873948_2874215_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874922_2875261_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879813_2880416_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880512_2881802_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881859_2882591_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882587_2883391_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883387_2884476_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884472_2885402_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885550_2886696_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886717_2887668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887685_2887844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887998_2891820_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891976_2892645_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892649_2894323_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894341_2895661_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895665_2897981_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898036_2900205_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900201_2905382_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905480_2905795_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906022_2906268_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906362_2906881_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906980_2908186_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908301_2909699_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909815_2910394_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910466_2911858_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912025_2912976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913256_2913877_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913873_2914287_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914283_2915327_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915382_2915571_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915580_2916345_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916435_2917092_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917183_2917942_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917967_2919569_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919769_2920774_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920874_2921138_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921255_2922032_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922622_2923573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925956_2927069_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927125_2928076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	2958462	2997651	4110596	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2958462_2959413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959430_2959580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959533_2960430_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962707_2964933_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965097_2966186_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966142_2966796_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966843_2967641_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968172_2969123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969203_2970352_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970408_2971359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971457_2971763_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971791_2972226_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972227_2973472_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973468_2974179_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974193_2975105_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975467_2975872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975868_2976327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976333_2977242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977238_2978105_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978091_2978919_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978929_2980057_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981134_2982373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982414_2983677_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983683_2984436_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984487_2984673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984948_2985413_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985444_2986104_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986248_2988357_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988353_2989304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989407_2990028_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990131_2990872_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992006_2993131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993176_2993545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993786_2994737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995772_2996315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996512_2996683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996700_2997651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	3383147	3503391	4110596	tRNA,transposase	Acinetobacter_phage(20.0%)	100	NA	NA
WP_023995489.1|3383147_3384098_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384502_3385147_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385171_3385756_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385856_3386474_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386476_3388192_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388188_3388497_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388513_3389131_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389175_3389478_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389578_3390433_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390620_3390845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391014_3391287_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391704_3392112_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392481_3393276_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393376_3394612_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394680_3395697_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395708_3397085_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397081_3398278_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398274_3399813_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399809_3401069_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403009_3403960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404726_3405821_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405813_3407148_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407101_3407785_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407810_3408974_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3408970_3409972_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409971_3410844_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410840_3411590_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411586_3412378_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412374_3413514_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413789_3414575_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414608_3415391_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415394_3415784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416923_3417787_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417822_3418911_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418907_3419858_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420211_3423190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424116_3424995_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3425959_3426910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3427992_3428943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428939_3429407_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429449_3430220_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430240_3431041_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431051_3432461_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432555_3433341_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433580_3434597_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434704_3435097_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435234_3435915_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435919_3436891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436986_3437937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439441_3440143_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3440142_3441567_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3441583_3442639_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3442635_3443976_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3444091_3445855_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445966_3446845_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446957_3447773_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447776_3448028_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448112_3449129_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449459_3449681_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452041_3452959_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453456_3454665_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454744_3456316_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456433_3457369_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457557_3458502_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459069_3464787_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464792_3465920_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465975_3466602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466873_3467890_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467985_3468696_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468692_3469682_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469777_3471409_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471411_3472149_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472304_3473177_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473526_3474666_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474662_3475322_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475393_3476026_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476055_3476574_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476584_3477694_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477740_3478595_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478596_3479499_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480721_3481672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483428_3484418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484593_3485382_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485378_3486410_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486428_3486992_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487047_3488568_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488831_3489536_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489543_3490272_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490386_3490761_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490803_3492093_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492089_3493259_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493255_3494095_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494154_3495090_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495102_3496053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496151_3497114_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497145_3497505_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497629_3498532_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498533_3500306_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500340_3501117_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502440_3503391_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	3518329	3576402	4110596	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518329_3519280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519408_3520542_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520585_3521491_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521493_3523194_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523190_3524111_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524118_3525096_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525154_3526189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528163_3528400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528526_3529390_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529478_3530300_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530379_3531117_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531113_3532106_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532258_3532882_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532926_3534075_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536398_3537349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537689_3538640_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538738_3539689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539985_3540483_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540525_3542301_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542308_3543175_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543181_3543916_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545085_3545880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546169_3546760_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546793_3548122_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548196_3549342_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549453_3550452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550414_3550849_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552365_3553250_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553246_3554452_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554448_3555309_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555421_3557212_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557252_3557897_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557918_3558227_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558392_3559679_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561112_3562063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564014_3565229_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565334_3566324_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566320_3566929_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566941_3567571_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567567_3568188_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568219_3569011_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569862_3570318_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570336_3571263_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571316_3572603_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573533_3574406_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574402_3575353_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575451_3576402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013905	Bordetella pertussis strain J210 chromosome, complete genome	4110596	4009663	4074575	4110596	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009663_4010149_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010237_4010375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010367_4011348_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011614_4012424_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012463_4013144_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013137_4013596_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013607_4013970_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4014052_4014736_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014791_4015100_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015118_4015433_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015429_4017904_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017911_4019303_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019299_4019485_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019463_4020165_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020161_4020983_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020963_4022088_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4022080_4023100_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023305_4024196_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024440_4025232_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025314_4025689_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025666_4027076_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4027068_4028451_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028785_4030390_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030467_4031439_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031449_4032376_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032766_4033717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033886_4035113_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035312_4036179_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036171_4037134_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037234_4038185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038283_4039234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039332_4040283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040279_4041773_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041769_4044877_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044873_4047942_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047938_4049189_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049369_4050122_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050163_4050808_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050816_4051797_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051896_4052640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052722_4053070_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053167_4054010_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054054_4054942_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054968_4055157_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055254_4056712_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056698_4058225_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058243_4058711_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058710_4059733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059853_4060594_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060648_4061749_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061750_4062941_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063060_4064077_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064395_4065067_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065063_4065972_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066183_4066831_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070691_4071759_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071769_4072579_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072668_4073442_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4073442_4073607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073624_4074575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
