The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	27282	70036	4106377	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	77634	136108	4106377	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	164893	225404	4106377	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	233336	286924	4106377	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	390857	448366	4106377	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	589371	650563	4106377	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590797_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592706_593198_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593216_594290_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594336_595440_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595515_596136_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596156_596666_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596720_596972_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597035_598169_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598176_598563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598559_601079_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601507_601846_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601842_602349_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602410_603211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603321_604263_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604356_605892_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607571_609422_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609425_610259_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610258_611200_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611451_612423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612564_614853_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615159_616068_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616122_617088_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617162_618824_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618895_619606_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619572_619737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619754_620705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621403_621787_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621844_622447_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622464_622866_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622981_623893_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623889_624471_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625265_626000_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626040_627090_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627237_627816_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628202_629180_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629273_633668_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633868_634717_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634875_635688_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635743_636694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636792_637593_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637654_638038_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638049_639402_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639689_640019_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640021_640771_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640953_641874_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641920_642133_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642155_642578_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642594_643695_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643791_645309_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645384_646224_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646245_647118_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647208_648303_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648596_649547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649621_650563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	655887	702078	4106377	tRNA,tail,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655887_656913_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656953_657193_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657262_658852_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658851_659400_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659480_660053_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660071_660983_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661056_662025_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662147_663221_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663225_665046_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665122_666073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666161_666497_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666630_667281_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667302_668721_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668790_669546_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669514_670273_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670283_671165_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671181_671889_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671891_672650_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672859_674602_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674594_675119_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675158_675953_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676120_677194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677292_678243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678494_678701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678772_679384_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679938_680190_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680182_680872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680889_681111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681128_682079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682718_683204_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683190_684468_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684470_685889_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685917_686973_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686978_687221_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687343_687946_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688374_689325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689999_690251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690313_690796_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690809_690998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690997_691393_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691389_691788_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691784_692207_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692214_692715_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692969_693488_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693497_693827_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693844_694135_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694160_696773_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696782_697142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697209_697743_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697739_698129_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698121_702078_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	708244	762174	4106377	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708244_709975_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710027_710456_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710458_711139_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711138_711597_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711633_712608_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712624_713941_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713972_714470_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714556_715246_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715245_716295_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716291_717086_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717254_717605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717580_718138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719267_720218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722355_723585_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723587_725030_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725134_726280_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726311_727109_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727133_728693_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728689_731062_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731171_732275_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732274_732967_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733110_733812_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733796_734174_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734905_735856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736015_736888_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737228_737447_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737486_738866_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738907_740305_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740344_741997_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742000_742885_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742884_743826_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743904_745524_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745690_746506_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746573_747143_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747143_748094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748748_749846_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749879_751145_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751302_752253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752496_753087_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753102_755547_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755666_756638_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756769_757294_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757253_758204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758425_760621_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760693_761101_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761223_762174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	853052	913928	4106377	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|853052_854003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854020_854575_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854576_855011_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855007_855442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855425_856229_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856245_857061_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857057_857873_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858019_858721_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858748_860707_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860789_861740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861960_862629_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862752_863859_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863871_866985_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866981_868475_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868489_869161_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869204_869699_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869839_870487_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870590_872639_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872635_874648_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874673_876008_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876116_877109_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877175_879260_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879284_880256_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880384_881416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881419_882571_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882741_883665_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883742_884567_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884763_885780_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885976_886960_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888558_889947_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889977_890967_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891077_892310_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892591_893392_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893414_895646_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896433_896880_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896901_897648_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897791_898769_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899402_900014_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900007_901225_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901365_902316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902414_903365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903361_904081_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904201_906361_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906451_906721_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906809_907016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907014_907542_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907560_908340_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908507_909524_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909596_910088_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910098_911814_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912977_913928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	934675	998268	4106377	transposase	Bacillus_virus(15.38%)	58	NA	NA
WP_005012067.1|934675_935626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935678_935900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936059_936272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936391_937510_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937606_937822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938015_938267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938379_939330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939326_939710_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939764_941579_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941728_942556_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942601_943582_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943578_943791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943787_944969_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945132_945867_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945868_948481_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948616_950530_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951145_951556_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951653_952739_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952837_953788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953784_954759_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954883_955795_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956071_956464_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956593_957544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957573_957756_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958528_959710_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959925_960603_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960599_961325_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961450_962032_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962402_965084_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965086_966217_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966209_967295_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967381_968281_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968277_969606_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969620_970292_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970479_972195_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972196_972556_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972747_973062_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973104_974325_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974321_975263_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975259_976249_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976283_976868_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976966_977917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977997_978909_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978969_980115_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980134_981049_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981120_981870_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981869_982799_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983042_984869_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984951_985593_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985782_986817_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988653_989718_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990515_991424_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992911_994186_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994339_994720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994727_995600_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995905_996286_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996496_997222_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997317_998268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	1024380	1082465	4106377	tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1024380_1025331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025429_1026170_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026364_1028401_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028418_1029429_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029546_1030740_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030769_1031543_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031539_1032730_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032755_1033694_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033690_1036039_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036193_1036835_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038164_1038317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038348_1038897_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038915_1039401_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039578_1040517_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040519_1040837_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040882_1041827_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043507_1044158_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044211_1044547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044543_1045404_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045420_1045702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045775_1046039_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046282_1047233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047531_1048269_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048704_1049028_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049062_1049623_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049743_1050619_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050631_1051579_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051680_1051974_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052000_1054058_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054072_1054573_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054646_1056353_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057216_1058269_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058321_1058711_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058719_1059352_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059451_1060468_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061298_1062306_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062302_1063946_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063942_1064830_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064970_1065444_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065433_1066456_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066452_1067880_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068817_1069834_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070166_1071102_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071151_1073032_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073098_1073443_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073587_1074724_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074720_1075794_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075951_1077388_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077478_1078120_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078455_1079472_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081514_1082465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	1086511	1236205	4106377	tRNA,holin,transposase	Planktothrix_phage(12.5%)	113	NA	NA
WP_003819794.1|1086511_1086925_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086926_1087286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087328_1088873_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088956_1089787_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089821_1090976_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091018_1091891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092007_1094296_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095502_1095967_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095993_1096944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096961_1097099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097311_1098088_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098132_1098990_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099011_1100028_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100162_1101203_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101397_1103479_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103714_1105208_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105438_1106233_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106453_1107812_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107808_1108651_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108669_1110556_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110497_1110749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110793_1111426_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111444_1112047_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112198_1113149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113729_1114437_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114795_1115782_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115921_1116935_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116931_1117882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117899_1118040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117994_1118453_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118489_1119803_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119820_1120192_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120188_1121652_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121792_1122521_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122502_1125352_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125564_1126515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126682_1127507_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127506_1128385_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129289_1130405_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130433_1131228_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131224_1133090_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133168_1133801_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133797_1134100_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134142_1135663_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135669_1136425_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136454_1137559_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137661_1139362_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139343_1140321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140330_1141611_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141603_1142299_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142332_1143160_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143441_1146672_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147407_1151334_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153233_1155030_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155029_1155998_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156067_1156913_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156980_1157535_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157581_1158532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158630_1159263_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159427_1161710_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161864_1164561_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164686_1165175_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167585_1170456_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170501_1171716_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171945_1173373_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173470_1174562_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174574_1175333_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175420_1176323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176319_1177270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177399_1178383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178437_1179160_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180638_1181994_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182074_1184450_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184614_1186690_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186751_1187546_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187653_1188616_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188603_1189359_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189466_1191104_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191171_1191909_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192011_1192587_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192759_1193296_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193328_1193643_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193658_1194504_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194542_1195922_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195999_1196881_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196979_1197930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197926_1198337_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198444_1199299_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199291_1200254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200299_1201424_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201529_1202408_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202532_1203312_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203465_1204887_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205321_1207019_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207245_1208187_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208513_1209260_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209267_1210194_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210315_1211233_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211272_1212226_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212250_1212829_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214502_1215111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215188_1215542_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215625_1216615_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216611_1216800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216817_1217768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217854_1218805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218801_1219752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220012_1221041_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221120_1222419_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222415_1222997_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223309_1227356_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227596_1235258_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235254_1236205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	1270680	1327891	4106377	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270680_1271631_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275377_1275989_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276211_1277672_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277768_1279361_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279714_1279972_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279973_1281314_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281409_1282099_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282111_1283542_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285266_1286088_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286098_1287670_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287698_1288676_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288702_1289506_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289502_1290297_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290304_1291540_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291553_1291967_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292716_1293667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294288_1296016_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296127_1297486_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297542_1297761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297778_1298729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298769_1299840_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299862_1300741_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300912_1301884_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302046_1302889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303050_1303731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303724_1304894_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304890_1305922_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305989_1307207_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307241_1308774_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308854_1309478_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309508_1310120_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310155_1310626_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311057_1312062_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312098_1313613_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313616_1314576_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314604_1315408_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315409_1317044_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317127_1318189_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318387_1318657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318660_1319185_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319600_1320551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320547_1321582_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321690_1322329_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322623_1322851_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322973_1323687_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323931_1324882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325021_1325267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325381_1326830_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326940_1327891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	1418124	1470277	4106377	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418124_1419075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419092_1419245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419241_1419595_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419607_1419970_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420011_1420437_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420639_1421896_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422094_1423075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423224_1424466_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424564_1425515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425523_1426219_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429040_1429640_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429650_1431816_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431839_1433624_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433623_1433713_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434407_1434680_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434679_1436746_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436742_1437693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437791_1438742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438857_1439190_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439186_1439873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439859_1440819_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440851_1443221_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443220_1443853_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443954_1445295_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445341_1446697_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446987_1447224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447411_1447729_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448001_1448517_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448787_1449543_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449881_1450088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450095_1450755_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451049_1453254_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453364_1454588_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454710_1455685_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455752_1456946_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456960_1457761_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457757_1459614_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459610_1460216_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460234_1461620_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462345_1463572_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463660_1464443_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464541_1465492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465518_1466292_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466303_1467545_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469326_1470277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	1514202	1582288	4106377	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514202_1514691_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514808_1515387_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515492_1515861_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515959_1516910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516916_1518029_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518715_1519918_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520121_1522782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522794_1526199_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526866_1529092_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529138_1529465_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529515_1530124_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530222_1531173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531242_1532007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532003_1532540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532706_1533558_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533617_1534244_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534240_1535191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535289_1536402_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536391_1537393_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537498_1539010_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539006_1540311_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540422_1540983_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541250_1541805_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542260_1542476_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542730_1545328_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545324_1546512_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547170_1547785_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547873_1548995_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549012_1549918_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550810_1551761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551942_1552695_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552763_1553423_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553419_1554148_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554160_1556440_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556464_1556668_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556709_1557342_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557477_1558395_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558391_1559105_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559342_1560113_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560117_1560717_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560961_1562452_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562510_1562795_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563360_1564287_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564423_1565164_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565330_1566707_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566888_1567794_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569445_1571248_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571365_1572016_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572114_1573065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573086_1574307_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574492_1575905_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575968_1577036_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577035_1578523_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578532_1579477_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579636_1580335_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580412_1581318_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581337_1582288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	1618237	1673828	4106377	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618237_1619188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619246_1620020_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620012_1621569_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621565_1622516_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623842_1624445_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624684_1625386_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625379_1626162_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626346_1627297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627395_1628133_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628322_1629081_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629127_1630117_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630294_1631263_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632802_1633771_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633779_1634721_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635194_1636205_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636195_1637710_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637706_1639053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639055_1640090_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640139_1641765_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642317_1643268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643372_1644320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644373_1646188_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646180_1646855_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646984_1650059_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650072_1650372_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650686_1651310_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651553_1652423_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652400_1653345_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653430_1654357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654469_1655249_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655239_1656436_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656466_1657417_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657638_1658328_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658392_1659148_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659199_1660192_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660201_1661155_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661270_1662233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663634_1664063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664059_1665010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665303_1666026_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666464_1667652_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667655_1668006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669755_1670727_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670740_1671454_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671458_1672376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672482_1672779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672877_1673828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	1831595	1890865	4106377	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831595_1832546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832670_1833480_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833680_1834631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835904_1837122_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838178_1839081_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839157_1840030_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840160_1840529_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840586_1841633_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841828_1843085_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843089_1844427_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844576_1845533_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845635_1846568_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846683_1847004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846996_1847356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847403_1848978_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849030_1849975_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849992_1850823_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850815_1852450_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852446_1853802_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854708_1856286_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856289_1857564_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857661_1858036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859751_1860885_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860922_1861528_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861524_1862343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862414_1865039_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865025_1865280_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865346_1865928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866231_1866492_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866657_1867281_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867280_1868054_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868050_1869259_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869284_1869758_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869831_1870782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870880_1871831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871929_1873279_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874044_1874800_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874892_1877775_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878097_1878523_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878550_1879699_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879695_1880202_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880217_1881504_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881553_1882849_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882850_1883489_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883494_1884652_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884678_1886034_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886037_1887108_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887246_1887483_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887570_1888677_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888642_1889947_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889965_1890865_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	1901105	1945427	4106377	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901105_1902056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902154_1903105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903304_1904390_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904405_1905167_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905163_1906087_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906185_1906710_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906718_1907462_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907557_1907797_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907810_1907963_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908048_1909539_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909630_1910569_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910565_1910742_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910744_1911407_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913028_1913172_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913168_1914143_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914037_1914292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914309_1915260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915256_1916531_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916634_1917828_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917824_1918478_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918474_1919911_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919898_1920258_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921072_1921213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921230_1922181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930767.1|1925348_1926869_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926956_1927607_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928555_1929851_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929872_1930757_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930855_1931731_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931720_1932077_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932207_1933182_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933311_1933491_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933588_1934113_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934123_1934960_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935072_1935444_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935440_1935992_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936007_1937699_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937747_1938428_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938675_1939140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939309_1940239_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940251_1940899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940972_1942790_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942873_1943824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944476_1945427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	2171095	2228374	4106377	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171095_2172046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172144_2174139_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174198_2175164_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175153_2178015_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178017_2178524_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178628_2179837_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179838_2180777_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180938_2181412_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181408_2182359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182469_2182910_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183038_2184268_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184306_2185128_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185181_2186333_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186424_2186913_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189463_2192013_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192083_2194657_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194922_2195123_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195154_2195316_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195373_2195712_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195860_2196811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197585_2198254_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198235_2200191_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200433_2201183_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201195_2202059_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202062_2203478_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203611_2204340_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204478_2204679_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204854_2205253_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205276_2206677_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206795_2207548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207836_2208514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208540_2209320_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209316_2210201_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210218_2210998_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210982_2211741_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211878_2212514_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212781_2213798_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213895_2214936_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215070_2216363_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217722_2218106_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218123_2218711_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2218748_2219699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219797_2220358_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220354_2220900_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221095_2222124_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222164_2223505_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223613_2224618_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224724_2227325_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2227423_2228374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	2474956	2533199	4106377	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2474956_2475907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2476386_2477043_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930386.1|2478726_2479356_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2479567_2480662_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2480806_2481619_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2481622_2483206_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2483376_2484507_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2484693_2485770_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2485851_2486502_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2486516_2487920_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2488203_2489022_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2489018_2489723_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2490622_2491738_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2491771_2492146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2492168_2493326_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2493338_2493572_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2494206_2497176_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2497190_2497400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2497551_2498181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2498177_2500235_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2500291_2500972_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2500968_2501529_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2501535_2502633_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2502785_2503379_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2503375_2504668_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2504681_2505224_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2505233_2506070_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2506103_2507165_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2507206_2508259_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2508274_2508577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2508718_2509669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2509686_2509851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2509847_2511542_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2511538_2512624_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2512671_2513571_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2513581_2514226_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2515247_2518490_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2518500_2519655_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2519881_2520844_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2520942_2521893_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2521991_2522942_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2522951_2523641_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2523700_2524138_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2524183_2525077_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2525124_2526297_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2526293_2527448_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2527644_2527995_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2527984_2528419_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2528435_2529386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2529533_2530001_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2529981_2531139_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2531204_2532131_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2532248_2533199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	2575477	2641977	4106377	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575477_2576428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576797_2577370_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577372_2578383_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578375_2578876_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578886_2579228_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579296_2580031_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580047_2580317_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580339_2581128_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581174_2582191_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582407_2583850_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584028_2585648_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585768_2587589_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587667_2589200_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589233_2590880_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590949_2591972_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591989_2593123_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593125_2593815_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593814_2594600_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594643_2595408_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595446_2596868_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596933_2597638_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597685_2598105_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598117_2598525_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598708_2599419_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599545_2599836_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599853_2600336_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604841_2605996_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606301_2607318_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607564_2608353_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608419_2609100_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609096_2609867_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609965_2610916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610971_2611889_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611899_2613078_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613097_2614093_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615681_2616290_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616277_2617318_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617335_2618298_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618294_2619488_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619484_2620282_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620307_2621294_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621312_2623352_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623553_2624234_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624247_2625159_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625155_2625734_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625872_2626778_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626785_2630205_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630192_2632793_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633748_2634381_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634774_2635533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635529_2636732_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636919_2637870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638777_2639923_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639909_2640665_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640781_2640961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641026_2641977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	2670092	2707504	4106377	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670092_2671043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671141_2672092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672184_2672724_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672830_2673175_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673232_2674681_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674868_2675204_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676831_2678010_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678092_2678593_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678702_2679404_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2679415_2679880_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679894_2680170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680166_2680943_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680971_2681799_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681924_2682395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682521_2683415_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683462_2684644_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684656_2685472_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2685605_2686133_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686129_2686627_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686774_2687152_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687373_2688324_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688422_2689034_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689268_2690396_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690506_2691595_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691647_2692499_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692518_2693400_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693576_2694890_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695100_2695934_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695930_2696512_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696865_2697816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697831_2698947_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699049_2699976_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699975_2701214_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701210_2701978_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701978_2702680_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702761_2703208_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2704097_2704736_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705504_2706455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706553_2707504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	2806631	2861148	4106377	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_076879566.1|2806631_2807582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807910_2808516_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808569_2809883_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809957_2810428_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810427_2811216_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811226_2812879_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812966_2813917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815078_2815585_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815581_2816346_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816361_2816646_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816710_2817700_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817871_2818801_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818772_2819459_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819492_2820038_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820082_2821348_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821344_2822247_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823428_2824373_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824467_2825985_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826026_2827655_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827762_2828644_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831756_2832131_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832155_2832494_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832537_2834172_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834210_2835557_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835664_2837086_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837155_2837740_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837842_2838793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838927_2840034_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840044_2841142_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841286_2842492_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842498_2843020_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843016_2843499_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843504_2843756_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843736_2844222_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844357_2847819_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847836_2848721_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848730_2849162_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849408_2849912_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849989_2851390_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851464_2852340_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852336_2853344_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853811_2854117_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854207_2854798_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854988_2856005_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856196_2858533_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858615_2859050_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859148_2860099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860197_2861148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	2869173	2925958	4106377	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2869173_2870124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871830_2872097_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872804_2873143_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877695_2878298_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878394_2879684_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879741_2880473_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880469_2881273_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881269_2882358_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882354_2883284_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883432_2884578_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884599_2885550_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885567_2885726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885880_2889702_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889858_2890527_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890531_2892205_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892223_2893543_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893547_2895863_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895918_2898087_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898083_2903264_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903362_2903677_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903904_2904150_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904244_2904763_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904862_2906068_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906183_2907581_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907697_2908276_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908348_2909740_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909907_2910858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911138_2911759_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911755_2912169_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912165_2913209_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913264_2913453_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913462_2914227_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914317_2914974_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915065_2915824_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915849_2917451_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917651_2918656_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918756_2919020_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919137_2919914_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920504_2921455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923838_2924951_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925007_2925958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	2956344	3000035	4106377	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2956344_2957295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957312_2957462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957415_2958312_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960589_2962815_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962979_2964068_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964024_2964678_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964725_2965523_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966054_2967005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967085_2968234_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968290_2969241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969339_2969645_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969673_2970108_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970109_2971354_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971350_2972061_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972075_2972987_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973349_2973754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973750_2974209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974215_2975124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975120_2975987_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975973_2976801_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976811_2977939_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979016_2980255_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980296_2981559_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981565_2982318_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982369_2982555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982830_2983295_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983326_2983986_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984130_2986239_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986235_2987186_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987289_2987910_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988013_2988754_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989888_2991013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991058_2991427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991668_2992619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993654_2994197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994394_2994565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994582_2995533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995529_2996438_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996564_2997401_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997913_2999023_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999084_3000035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	3122619	3186454	4106377	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	56	NA	NA
WP_005015810.1|3122619_3123570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3123715_3124840_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3125045_3125609_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3126603_3127086_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3127243_3128491_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3128711_3129368_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3129403_3130633_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_158516320.1|3130727_3130883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3130900_3131851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3131942_3133358_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3133363_3134500_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3134569_3134941_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3135028_3135775_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3135811_3136876_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3137064_3137457_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3137466_3137895_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3138190_3139288_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3139629_3140994_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3141052_3141604_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3141617_3142292_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3143548_3144358_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3144360_3145197_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3145211_3145904_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3145915_3146305_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3146410_3147799_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3147915_3149412_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3149708_3150383_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3150481_3151432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3151530_3152481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3152477_3154937_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_033446281.1|3155072_3156479_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3156482_3157670_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3157738_3158248_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3158449_3158902_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3159463_3162526_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3162831_3165759_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3165780_3166977_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3167294_3167822_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_023853329.1|3167975_3168536_+	YggT family protein	NA	NA	NA	NA	NA
WP_023853325.1|3168543_3169998_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3170017_3171145_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_019248818.1|3171274_3172450_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3172427_3172667_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3172947_3173451_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3173623_3174565_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3174576_3175674_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3176639_3177986_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3177995_3178445_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3178534_3178969_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3179047_3179596_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3179678_3181049_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3181059_3181653_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3181724_3183608_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3183645_3184545_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3184541_3185405_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3185503_3186454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	3234598	3248786	4106377	transposase,protease	Erwinia_phage(100.0%)	15	NA	NA
WP_005012808.1|3234598_3235549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3235993_3236305_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3236304_3236835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3236791_3236980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3236997_3237948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3238237_3238702_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3238716_3240222_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3240475_3242083_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3242138_3243044_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3243484_3244435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3244533_3245484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3245565_3246147_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3246571_3246877_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3246890_3248225_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3248246_3248786_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 28
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	3267209	3329274	4106377	tRNA,holin,integrase,transposase	Tupanvirus(12.5%)	48	3260603:3260621	3333361:3333379
3260603:3260621	attL	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
WP_010931277.1|3267209_3267545_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3267544_3268387_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3268485_3269436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3269500_3270472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3270535_3271555_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3271556_3272930_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3273207_3273888_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3273963_3276027_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3276023_3277118_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3277132_3278392_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3278411_3280100_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3280374_3281127_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3281265_3282216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3282528_3284007_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3284013_3285123_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3285134_3285815_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3285836_3286592_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3286727_3287612_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3287699_3288281_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3288541_3288841_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3288992_3289472_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3290191_3291628_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3291624_3292128_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3292143_3293094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3293621_3294395_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3294527_3295538_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3295689_3297345_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3297399_3297741_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3297754_3299194_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3299326_3300142_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3300105_3300318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3300335_3301286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3302673_3303621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3303847_3304588_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3304673_3305624_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3305641_3305797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3307065_3308637_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3308969_3310823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3310867_3313432_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313850_3314801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3317666_3318161_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3318177_3319128_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879586.1|3319114_3319315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931301.1|3319311_3320523_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3320538_3323490_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_019247951.1|3323491_3326248_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3326758_3327805_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3328146_3329274_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
3333361:3333379	attR	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
>prophage 29
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	3381031	3434771	4106377	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381031_3381982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382386_3383031_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383055_3383640_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383740_3384358_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384360_3386076_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386072_3386381_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386397_3387015_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387059_3387362_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387462_3388317_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388504_3388729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388898_3389171_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389588_3389996_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390365_3391160_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391260_3392496_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392564_3393581_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393592_3394969_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394965_3396162_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396158_3397697_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397693_3398953_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400893_3401844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402609_3403704_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403696_3405031_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404984_3405668_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405693_3406857_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406853_3407855_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407854_3408727_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408723_3409473_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409469_3410261_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410257_3411397_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411672_3412458_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412491_3413274_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413277_3413667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414806_3415670_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415705_3416794_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416790_3417741_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418094_3421073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421999_3422878_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424826_3425777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425773_3426241_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426283_3427054_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427074_3427875_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427885_3429295_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429389_3430175_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430414_3431431_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431538_3431931_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432068_3432749_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432753_3433725_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433820_3434771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	3440926	3500224	4106377	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440926_3442690_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442801_3443680_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443792_3444608_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444611_3444863_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444947_3445964_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446294_3446516_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448876_3449794_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450291_3451500_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451579_3453151_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453268_3454204_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454392_3455337_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455904_3461622_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461627_3462755_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462810_3463437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463708_3464725_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464820_3465531_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465527_3466517_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466612_3468244_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468246_3468984_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469139_3470012_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470361_3471501_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471497_3472157_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472228_3472861_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472890_3473409_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473419_3474529_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474575_3475430_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475431_3476334_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477556_3478507_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480261_3481251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481426_3482215_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482211_3483243_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483261_3483825_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483880_3485401_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485664_3486369_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486376_3487105_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487219_3487594_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487636_3488926_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488922_3490092_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490088_3490928_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490987_3491923_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3491935_3492886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492984_3493947_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493978_3494338_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494462_3495365_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495366_3497139_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497173_3497950_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499273_3500224_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	3515162	3573235	4106377	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515162_3516113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516241_3517375_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517418_3518324_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518326_3520027_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520023_3520944_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520951_3521929_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521987_3523022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3524996_3525233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525359_3526223_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526311_3527133_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527212_3527950_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527946_3528939_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529091_3529715_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529759_3530908_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533231_3534182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534522_3535473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535571_3536522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536818_3537316_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537358_3539134_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539141_3540008_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540014_3540749_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541918_3542713_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543002_3543593_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543626_3544955_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545029_3546175_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546286_3547285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547247_3547682_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549198_3550083_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550079_3551285_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551281_3552142_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552254_3554045_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554085_3554730_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554751_3555060_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555225_3556512_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557945_3558896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560847_3562062_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562167_3563157_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563153_3563762_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563774_3564404_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564400_3565021_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565052_3565844_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566695_3567151_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567169_3568096_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568149_3569436_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570366_3571239_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571235_3572186_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572284_3573235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP013898	Bordetella pertussis strain J161 chromosome, complete genome	4106377	4005446	4070358	4106377	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005446_4005932_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006020_4006158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006150_4007131_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007397_4008207_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008246_4008927_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008920_4009379_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009390_4009753_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009835_4010519_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010574_4010883_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010901_4011216_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011212_4013687_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013694_4015086_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015082_4015268_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015246_4015948_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015944_4016766_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016746_4017871_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017863_4018883_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019088_4019979_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020223_4021015_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021097_4021472_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021449_4022859_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022851_4024234_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024568_4026173_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026250_4027222_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027232_4028159_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028549_4029500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029669_4030896_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031095_4031962_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031954_4032917_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033017_4033968_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034066_4035017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035115_4036066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036062_4037556_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037552_4040660_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040656_4043725_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043721_4044972_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045152_4045905_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045946_4046591_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046599_4047580_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047679_4048423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048505_4048853_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048950_4049793_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049837_4050725_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050751_4050940_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051037_4052495_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052481_4054008_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054026_4054494_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054493_4055516_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055636_4056377_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056431_4057532_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057533_4058724_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058843_4059860_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060178_4060850_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060846_4061755_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061966_4062614_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066474_4067542_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067552_4068362_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068451_4069225_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069225_4069390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069407_4070358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
