The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	27282	70036	4107438	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	77634	136108	4107438	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	164893	225403	4107438	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	233335	286923	4107438	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	390856	448365	4107438	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929577.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	589370	650562	4107438	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590796_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592705_593197_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593215_594289_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594335_595439_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595514_596135_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596155_596665_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596719_596971_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597034_598168_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598175_598562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598558_601078_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601506_601845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601841_602348_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602409_603210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603320_604262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604355_605891_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607570_609421_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609424_610258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610257_611199_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611450_612422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612563_614852_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615158_616067_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616121_617087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617161_618823_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618894_619605_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619571_619736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619753_620704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621402_621786_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621843_622446_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622463_622865_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622980_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625264_625999_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626039_627089_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627236_627815_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628201_629179_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635742_636693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636791_637592_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637653_638037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638048_639401_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639688_640018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640020_640770_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640952_641873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641919_642132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642154_642577_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642593_643694_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643790_645308_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646244_647117_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647207_648302_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648595_649546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	655886	703125	4107438	transposase,tail,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	52	NA	NA
WP_023995141.1|655886_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656952_657192_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659479_660052_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660070_660982_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661055_662024_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662146_663220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663224_665045_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665121_666072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666160_666496_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666629_667280_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668789_669545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672858_674601_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674593_675118_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675157_675952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681936_682158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691856_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	709291	763221	4107438	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761740_762148_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	885810	953786	4107438	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887023_888007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889605_890994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891024_892014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892124_893357_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893638_894439_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894461_896693_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906807_907014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	997315	1069832	4107438	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998370_999420_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999557_1000574_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002082_1002655_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002714_1003446_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003497_1004415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005222_1008402_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008398_1009781_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009850_1010102_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010247_1010862_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011048_1013109_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013238_1014090_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014086_1014713_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014709_1016464_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016756_1019462_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019474_1021136_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021148_1022939_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023160_1024336_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024378_1025329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030767_1031541_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033688_1036037_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036191_1036833_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038162_1038315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038346_1038895_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039576_1040515_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040880_1041825_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044541_1045402_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047529_1048267_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048702_1049026_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049060_1049621_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049741_1050617_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050629_1051577_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051678_1051972_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051998_1054056_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054070_1054571_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054644_1056351_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057214_1058267_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058319_1058709_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058717_1059350_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059449_1060466_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061296_1062304_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062300_1063944_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063940_1064828_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064968_1065442_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065431_1066454_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068815_1069832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1073585	1135662	4107438	transposase,holin,tRNA	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073585_1074722_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074718_1075792_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075949_1077386_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077476_1078118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081513_1082464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096960_1097098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117898_1118039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117993_1118452_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118488_1119802_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119819_1120191_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120187_1121651_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121791_1122520_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122501_1125351_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125563_1126514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126681_1127506_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127505_1128384_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129288_1130404_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130432_1131227_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131223_1133089_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133167_1133800_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133796_1134099_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134141_1135662_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1153232	1219752	4107438	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153232_1155029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155028_1155997_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156066_1156912_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156979_1157534_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157580_1158531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158629_1159262_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159427_1161710_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161864_1164561_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164686_1165175_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167585_1170456_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170501_1171716_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171945_1173373_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173470_1174562_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174574_1175333_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175420_1176323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176319_1177270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177399_1178383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178437_1179160_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180638_1181994_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182074_1184450_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184614_1186690_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186751_1187546_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187653_1188616_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188603_1189359_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189466_1191104_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191171_1191909_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192011_1192587_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192759_1193296_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193328_1193643_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193658_1194504_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194542_1195922_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195999_1196881_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196979_1197930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197926_1198337_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198444_1199299_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199291_1200254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200299_1201424_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201529_1202408_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202532_1203312_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203465_1204887_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205321_1207019_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207245_1208187_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208513_1209260_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209267_1210194_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210315_1211233_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211272_1212226_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212250_1212829_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214502_1215111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215188_1215542_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215625_1216615_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216611_1216800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216817_1217768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217854_1218805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218801_1219752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1270680	1327891	4107438	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270680_1271631_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275377_1275989_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276211_1277672_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277768_1279361_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279714_1279972_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279973_1281314_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281409_1282099_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282111_1283542_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285266_1286088_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286098_1287670_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287698_1288676_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288702_1289506_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289502_1290297_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290304_1291540_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291553_1291967_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292716_1293667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294288_1296016_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296127_1297486_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297542_1297761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297778_1298729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298769_1299840_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299862_1300741_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300912_1301884_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302046_1302889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303050_1303731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303724_1304894_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304890_1305922_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305989_1307207_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307241_1308774_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308854_1309478_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309508_1310120_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310155_1310626_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311057_1312062_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312098_1313613_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313616_1314576_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314604_1315408_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315409_1317044_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317127_1318189_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318387_1318657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318660_1319185_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319600_1320551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320547_1321582_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321690_1322329_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322623_1322851_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322973_1323687_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323931_1324882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325021_1325267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325381_1326830_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326940_1327891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1418124	1470277	4107438	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418124_1419075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419092_1419245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419241_1419595_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419607_1419970_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420011_1420437_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420639_1421896_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422094_1423075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423224_1424466_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424564_1425515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425523_1426219_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429040_1429640_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429650_1431816_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431839_1433624_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433623_1433713_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434407_1434680_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434679_1436746_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436742_1437693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437791_1438742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438857_1439190_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439186_1439873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439859_1440819_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440851_1443221_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443220_1443853_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443954_1445295_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445341_1446697_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446987_1447224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447411_1447729_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448001_1448517_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448787_1449543_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449881_1450088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450095_1450755_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451049_1453254_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453364_1454588_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454710_1455685_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455752_1456946_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456960_1457761_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457757_1459614_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459610_1460216_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460234_1461620_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462345_1463572_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463660_1464443_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464541_1465492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465518_1466292_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466303_1467545_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469326_1470277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1514201	1582286	4107438	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514201_1514690_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514807_1515386_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515491_1515860_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515958_1516909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516915_1518028_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518714_1519917_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520120_1522781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522793_1526198_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526865_1529091_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529137_1529464_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529514_1530123_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530221_1531172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531241_1532006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532002_1532539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532705_1533557_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533616_1534243_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534239_1535190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535287_1536400_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536389_1537391_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537496_1539008_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539004_1540309_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540420_1540981_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541248_1541803_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542258_1542474_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542728_1545326_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545322_1546510_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547168_1547783_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547871_1548993_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549010_1549916_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550808_1551759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551940_1552693_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552761_1553421_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553417_1554146_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554158_1556438_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556462_1556666_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556707_1557340_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557475_1558393_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558389_1559103_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559340_1560111_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560115_1560715_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560959_1562450_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562508_1562793_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563358_1564285_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564421_1565162_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565328_1566705_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566886_1567792_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569443_1571246_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571363_1572014_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572112_1573063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573084_1574305_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574490_1575903_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575966_1577034_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577033_1578521_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578530_1579475_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579634_1580333_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580410_1581316_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581335_1582286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1618235	1673826	4107438	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618235_1619186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619244_1620018_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620010_1621567_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621563_1622514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623840_1624443_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624682_1625384_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625377_1626160_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626344_1627295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627393_1628131_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628320_1629079_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629125_1630115_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630292_1631261_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632800_1633769_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633777_1634719_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635192_1636203_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636193_1637708_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637704_1639051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639053_1640088_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640137_1641763_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642315_1643266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643370_1644318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644371_1646186_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646178_1646853_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646982_1650057_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650070_1650370_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650684_1651308_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651551_1652421_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652398_1653343_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653428_1654355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654467_1655247_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655237_1656434_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656464_1657415_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657636_1658326_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658390_1659146_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659197_1660190_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660199_1661153_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661268_1662231_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663632_1664061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664057_1665008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665301_1666024_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666462_1667650_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667653_1668004_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669753_1670725_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670738_1671452_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671456_1672374_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672480_1672777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672875_1673826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1778360	1835678	4107438	transposase,tRNA	Tupanvirus(16.67%)	56	NA	NA
WP_010930630.1|1778360_1779821_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1779840_1780485_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1780521_1781487_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1781585_1782536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|1782596_1783631_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1783730_1784996_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1785389_1786406_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930634.1|1786749_1787250_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003810016.1|1787291_1787606_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010930635.1|1787615_1788557_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810020.1|1788553_1789078_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003820128.1|1789080_1790349_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_004568037.1|1790377_1791361_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930636.1|1791357_1792167_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003820133.1|1792163_1792967_+	aspartate dehydrogenase	NA	NA	NA	NA	NA
WP_010930638.1|1792981_1793749_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820136.1|1793836_1794475_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930639.1|1794479_1795433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930640.1|1795544_1796669_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810039.1|1798306_1799134_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930641.1|1799130_1799934_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930642.1|1799930_1801022_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
WP_010930643.1|1801428_1802457_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_019247348.1|1802615_1803320_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930644.1|1803328_1805449_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930645.1|1805449_1806406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820147.1|1806474_1806867_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930646.1|1806870_1807347_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003820150.1|1807360_1807696_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930647.1|1807702_1808152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820151.1|1808359_1808659_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930648.1|1808711_1809824_+	alkene reductase	NA	NA	NA	NA	NA
WP_015041299.1|1809828_1810467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820153.1|1810447_1811707_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_010930650.1|1811710_1813816_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_010930651.1|1813821_1815807_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_010930652.1|1816015_1816252_+	membrane protein	NA	NA	NA	NA	NA
WP_003820159.1|1816596_1817082_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1817449_1818400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1819957_1820608_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1820736_1821939_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1822016_1824053_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1824305_1824797_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1825012_1825525_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1825542_1826754_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1826791_1827202_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1827203_1827527_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1827529_1828042_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1828171_1830034_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1830043_1830385_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1830384_1830579_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1830703_1831597_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1831593_1832544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832668_1833478_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012067.1|1833678_1834629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1834727_1835678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1863461	1904152	4107438	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_010930590.1|1863461_1866086_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1866072_1866327_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866393_1866975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867278_1867539_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867704_1868328_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868327_1869101_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1869097_1870306_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870331_1870805_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870878_1871829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871927_1872878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872976_1874326_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1875091_1875847_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875939_1878822_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879144_1879570_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879597_1880746_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880742_1881249_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1881264_1882551_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1882600_1883896_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883897_1884536_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1884541_1885699_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885725_1887081_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1887084_1888155_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888293_1888530_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888617_1889724_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889689_1890994_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1891012_1891912_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1892095_1893253_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1893329_1894625_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1894738_1895278_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1895555_1895768_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1895787_1897818_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_010930783.1|1898503_1900786_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1901195_1901495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1901779_1902193_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1902152_1903103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903201_1904152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1915356	1963713	4107438	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1915356_1916307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916303_1917578_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1917681_1918875_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918871_1919525_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919521_1920958_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920945_1921305_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1922119_1922260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1922277_1923228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1924273_1926139_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1926396_1927917_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1928004_1928655_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1929603_1930899_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930920_1931805_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931903_1932779_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1932768_1933125_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1933255_1934230_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1934359_1934539_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1934636_1935161_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1935171_1936008_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1936120_1936492_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1936488_1937040_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1937055_1938747_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1938795_1939476_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1939723_1940188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1940357_1941287_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1941299_1941947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1942020_1943838_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943921_1944872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1945524_1946475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1946493_1946841_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1946869_1948309_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1948327_1948723_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1948897_1949506_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1949518_1950337_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1950288_1951263_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1951291_1952353_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1952349_1954566_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1954579_1955038_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1955195_1955540_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1955696_1956602_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1956688_1957702_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1959681_1960698_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1960840_1962193_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1962367_1962664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1962762_1963713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	1975209	2039578	4107438	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975209_1976160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976381_1977332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977430_1978396_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978533_1979433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982027_1983515_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983525_1984722_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984794_1986114_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986110_1986986_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987016_1988165_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988182_1988497_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988518_1989241_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989240_1990059_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990063_1990591_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990596_1991853_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992211_1993351_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993428_1994301_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995171_1996122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996081_1996717_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997076_1998399_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998717_1999539_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000963_2001536_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001575_2003405_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003367_2004426_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004463_2004925_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005009_2005756_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007246_2010477_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010543_2011875_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012127_2012502_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012604_2013783_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013793_2014384_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014494_2015301_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015326_2016121_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017121_2018096_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018254_2018767_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018923_2019895_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021639_2022446_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022442_2023744_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023694_2024459_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024572_2025343_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025427_2026615_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026687_2027062_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027162_2028425_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028421_2029279_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029451_2030453_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030904_2031855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033418_2034570_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034938_2035175_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035238_2035406_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035519_2037415_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037578_2038529_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038627_2039578_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	2171106	2220759	4107438	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171106_2172057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172155_2174150_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174209_2175175_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175164_2178026_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178028_2178535_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178639_2179848_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179849_2180788_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180949_2181423_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181419_2182370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182480_2182921_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183049_2184279_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184317_2185139_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185192_2186344_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186435_2186924_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189474_2192024_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192094_2194668_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194933_2195134_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195165_2195327_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195384_2195723_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195871_2196822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197596_2198265_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198246_2200202_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200444_2201194_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201206_2202070_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202073_2203489_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203622_2204351_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204489_2204690_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204865_2205264_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205287_2206688_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206806_2207559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207847_2208525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208551_2209331_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209327_2210212_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210229_2211009_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210993_2211752_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211889_2212525_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212792_2213809_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213906_2214947_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215081_2216374_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217733_2218117_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218134_2218722_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218759_2219710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219808_2220759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	2477065	2535309	4107438	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2477065_2478016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478495_2479152_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479166_2480834_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480836_2481466_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481677_2482772_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482916_2483729_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483732_2485316_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485486_2486617_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486803_2487880_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487961_2488612_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488626_2490030_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490313_2491132_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2491128_2491833_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492732_2493848_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493881_2494256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494278_2495436_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495448_2495682_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496316_2499286_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499300_2499510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499661_2500291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500287_2502345_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502401_2503082_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503078_2503639_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503645_2504743_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504895_2505489_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505485_2506778_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506791_2507334_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507343_2508180_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508213_2509275_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509316_2510369_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510384_2510687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510828_2511779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511796_2511961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511957_2513652_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513648_2514734_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514781_2515681_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515691_2516336_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517357_2520600_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520610_2521765_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521991_2522954_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523052_2524003_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524101_2525052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525061_2525751_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525810_2526248_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526293_2527187_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527234_2528407_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528403_2529558_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2529754_2530105_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530094_2530529_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530545_2531496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531643_2532111_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532091_2533249_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533314_2534241_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534358_2535309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	2577587	2644087	4107438	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577587_2578538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578907_2579480_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579482_2580493_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580485_2580986_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580996_2581338_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581406_2582141_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582157_2582427_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582449_2583238_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010930525.1|2583284_2584301_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584517_2585960_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586138_2587758_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587878_2589699_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589777_2591310_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591343_2592990_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593059_2594082_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594099_2595233_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595235_2595925_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595924_2596710_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596753_2597518_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597556_2598978_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599043_2599748_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599795_2600215_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600227_2600635_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600818_2601529_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601655_2601946_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601963_2602446_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606951_2608106_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608411_2609428_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609674_2610463_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610529_2611210_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611206_2611977_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612075_2613026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613081_2613999_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614009_2615188_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615207_2616203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617791_2618400_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618387_2619428_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619445_2620408_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620404_2621598_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621594_2622392_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622417_2623404_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623422_2625462_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625663_2626344_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626357_2627269_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627265_2627844_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627982_2628888_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628895_2632315_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632302_2634903_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635858_2636491_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636884_2637643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637639_2638842_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639029_2639980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640887_2642033_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642019_2642775_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642891_2643071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643136_2644087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	2808740	2863257	4107438	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808740_2809691_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810019_2810625_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810678_2811992_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812066_2812537_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812536_2813325_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813335_2814988_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815075_2816026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817187_2817694_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817690_2818455_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818470_2818755_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818819_2819809_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819980_2820910_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820881_2821568_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821601_2822147_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822191_2823457_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823453_2824356_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825537_2826482_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826576_2828094_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828135_2829764_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829871_2830753_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833865_2834240_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834264_2834603_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834646_2836281_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836319_2837666_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837773_2839195_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839264_2839849_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839951_2840902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841036_2842143_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842153_2843251_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843395_2844601_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844607_2845129_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845125_2845608_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845613_2845865_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845845_2846331_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846466_2849928_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849945_2850830_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850839_2851271_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851517_2852021_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852098_2853499_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853573_2854449_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854445_2855453_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855920_2856226_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856316_2856907_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857097_2858114_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858305_2860642_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860724_2861159_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861257_2862208_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862306_2863257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	2871282	2928068	4107438	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871282_2872233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873939_2874206_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874913_2875252_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879805_2880408_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880504_2881794_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881851_2882583_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882579_2883383_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883379_2884468_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884464_2885394_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885542_2886688_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886709_2887660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887677_2887836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887990_2891812_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891968_2892637_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892641_2894315_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894333_2895653_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895657_2897973_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898028_2900197_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900193_2905374_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905472_2905787_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906014_2906260_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906354_2906873_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906972_2908178_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908293_2909691_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909807_2910386_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910458_2911850_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912017_2912968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913248_2913869_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913865_2914279_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914275_2915319_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915374_2915563_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915572_2916337_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916427_2917084_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917175_2917934_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917959_2919561_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919761_2920766_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920866_2921130_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921247_2922024_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922614_2923565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925948_2927061_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927117_2928068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	2958454	3002145	4107438	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958454_2959405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959422_2959572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959525_2960422_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962699_2964925_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965089_2966178_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966134_2966788_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966835_2967633_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968164_2969115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969195_2970344_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970400_2971351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971449_2971755_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971783_2972218_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972219_2973464_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973460_2974171_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974185_2975097_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975459_2975864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975860_2976319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976325_2977234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977230_2978097_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978083_2978911_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978921_2980049_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981126_2982365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982406_2983669_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983675_2984428_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984479_2984665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984940_2985405_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985436_2986096_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986240_2988349_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988345_2989296_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989399_2990020_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990123_2990864_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991998_2993123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993168_2993537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993778_2994729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995764_2996307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996504_2996675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996692_2997643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997639_2998548_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998674_2999511_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000023_3001133_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001194_3002145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	3382090	3435831	4107438	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382090_3383041_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383445_3384090_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384114_3384699_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384799_3385417_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385419_3387135_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387131_3387440_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387456_3388074_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388118_3388421_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388521_3389376_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389563_3389788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389957_3390230_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390647_3391055_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391424_3392219_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392319_3393555_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393623_3394640_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394651_3396028_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396024_3397221_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397217_3398756_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398752_3400012_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401952_3402903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403669_3404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404756_3406091_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406044_3406728_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406753_3407917_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407913_3408915_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408914_3409787_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409783_3410533_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410529_3411321_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411317_3412457_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412732_3413518_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413551_3414334_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414337_3414727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415866_3416730_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416765_3417854_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417850_3418801_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419154_3422133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423059_3423938_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425886_3426837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426833_3427301_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427343_3428114_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428134_3428935_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428945_3430355_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430449_3431235_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431474_3432491_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432598_3432991_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433128_3433809_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433813_3434785_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434880_3435831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	3441986	3501284	4107438	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3441986_3443750_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443861_3444740_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444852_3445668_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445671_3445923_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446007_3447024_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447354_3447576_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449936_3450854_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451351_3452560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452639_3454211_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454328_3455264_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455452_3456397_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456964_3462682_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462687_3463815_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463870_3464497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3464768_3465785_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465880_3466591_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466587_3467577_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467672_3469304_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469306_3470044_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470199_3471072_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471421_3472561_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472557_3473217_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473288_3473921_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473950_3474469_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474479_3475589_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475635_3476490_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476491_3477394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478616_3479567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481321_3482311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482486_3483275_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483271_3484303_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484321_3484885_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484940_3486461_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486724_3487429_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487436_3488165_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488279_3488654_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488696_3489986_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489982_3491152_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491148_3491988_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492047_3492983_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492995_3493946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494044_3495007_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495038_3495398_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495522_3496425_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496426_3498199_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498233_3499010_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500333_3501284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	3516222	3574295	4107438	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516222_3517173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517301_3518435_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518478_3519384_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519386_3521087_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521083_3522004_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522011_3522989_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523047_3524082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526056_3526293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526419_3527283_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527371_3528193_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528272_3529010_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3529006_3529999_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530151_3530775_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530819_3531968_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3534291_3535242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535582_3536533_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536631_3537582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537878_3538376_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538418_3540194_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540201_3541068_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541074_3541809_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542978_3543773_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544062_3544653_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544686_3546015_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546089_3547235_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547346_3548345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548307_3548742_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550258_3551143_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551139_3552345_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552341_3553202_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553314_3555105_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555145_3555790_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3555811_3556120_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556285_3557572_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3559005_3559956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561907_3563122_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563227_3564217_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564213_3564822_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564834_3565464_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565460_3566081_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566112_3566904_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567755_3568211_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568229_3569156_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569209_3570496_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571426_3572299_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572295_3573246_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573344_3574295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013897	Bordetella pertussis strain J159 chromosome, complete genome	4107438	4006506	4071418	4107438	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006506_4006992_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007080_4007218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007210_4008191_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008457_4009267_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009306_4009987_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009980_4010439_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010450_4010813_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010895_4011579_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011634_4011943_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011961_4012276_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012272_4014747_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014754_4016146_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016142_4016328_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016306_4017008_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017004_4017826_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017806_4018931_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018923_4019943_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020148_4021039_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021283_4022075_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022157_4022532_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022509_4023919_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023911_4025294_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025628_4027233_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027310_4028282_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028292_4029219_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029609_4030560_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030729_4031956_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032155_4033022_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033014_4033977_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034077_4035028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035126_4036077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036175_4037126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037122_4038616_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038612_4041720_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041716_4044785_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044781_4046032_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046212_4046965_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047006_4047651_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047659_4048640_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048739_4049483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049565_4049913_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050010_4050853_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050897_4051785_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051811_4052000_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052097_4053555_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053541_4055068_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055086_4055554_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055553_4056576_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056696_4057437_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057491_4058592_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058593_4059784_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059903_4060920_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061238_4061910_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061906_4062815_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063026_4063674_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067534_4068602_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068612_4069422_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069511_4070285_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070285_4070450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070467_4071418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
