The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	27282	70036	4105638	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	77634	136108	4105638	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	164893	225404	4105638	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_010930800.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	233337	286925	4105638	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	390858	448367	4105638	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	589372	650562	4105638	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589372_590323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590798_591689_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591685_592507_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592705_593197_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593215_594289_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594335_595439_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595514_596135_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596155_596665_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596719_596971_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597034_598168_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598175_598562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598558_601078_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601506_601845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601841_602348_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602409_603210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603320_604262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604355_605891_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607570_609421_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609424_610258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610257_611199_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611450_612422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612563_614852_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615158_616067_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616121_617087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|617161_618823_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618894_619605_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619571_619736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619753_620704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621402_621786_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621843_622446_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622463_622865_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622980_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625264_625999_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626039_627089_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627236_627815_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628201_629179_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635742_636693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636791_637592_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637653_638037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638048_639401_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639688_640018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640020_640770_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640952_641873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641919_642132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642154_642577_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642593_643694_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643790_645308_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646244_647117_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647207_648302_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648595_649546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	655886	702077	4105638	tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655886_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656952_657192_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659479_660052_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660070_660982_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661055_662024_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662146_663220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663224_665045_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665121_666072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666160_666496_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666629_667280_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668789_669545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672858_674601_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674593_675118_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675157_675952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677291_678242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678493_678700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678771_679383_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679937_680189_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680181_680871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680888_681110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681127_682078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682717_683203_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683189_684467_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684469_685888_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685916_686972_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686977_687220_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687342_687945_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688373_689324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689998_690250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690312_690795_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690808_690997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690996_691392_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691388_691787_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691783_692206_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692213_692714_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692968_693487_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693496_693826_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693843_694134_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694159_696772_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696781_697141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697208_697742_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697738_698128_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698120_702077_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	708243	762173	4105638	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708243_709974_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710026_710455_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710457_711138_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711137_711596_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711632_712607_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712623_713940_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713971_714469_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714555_715245_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715244_716294_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716290_717085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717253_717604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717579_718137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719266_720217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722354_723584_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723586_725029_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725133_726279_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726310_727108_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727132_728692_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728688_731061_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731170_732274_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732273_732966_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733109_733811_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733795_734173_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734904_735855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736014_736887_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737227_737446_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737485_738865_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738906_740304_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740343_741996_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741999_742884_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742883_743825_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743903_745523_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745689_746505_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746572_747142_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747142_748093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748747_749845_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749878_751144_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751301_752252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752495_753086_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753101_755546_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755665_756637_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756768_757293_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757252_758203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758424_760620_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760692_761100_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761222_762173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	884762	952738	4105638	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884762_885779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885975_886959_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888557_889946_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889976_890966_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891076_892309_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892590_893391_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893413_895645_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896432_896879_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896900_897647_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897790_898768_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899401_900013_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900006_901224_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901364_902315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902311_903031_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903151_905311_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905401_905671_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905759_905966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905964_906492_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906510_907290_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907457_908474_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908546_909038_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909048_910764_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911927_912878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912874_914707_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915105_915765_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916292_916973_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917254_917971_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917985_919287_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921431_924320_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924543_925896_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925924_926446_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926442_927897_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927931_928180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928285_929161_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929186_930242_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930254_931046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931078_932449_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933625_934576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934628_934850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935009_935222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935341_936460_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936556_936772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936965_937217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937329_938280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938276_938660_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938714_940529_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940678_941506_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941551_942532_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942528_942741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942737_943919_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944082_944817_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944818_947431_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947566_949480_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950095_950506_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950603_951689_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951787_952738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	975916	1047232	4105638	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|975916_976867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|976947_977859_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|977919_979065_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|979084_979999_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|980070_980820_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|980819_981749_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|981992_983819_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|983901_984543_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|984732_985767_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|987603_988668_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|989465_990374_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|991861_993136_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|993289_993670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|993677_994550_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|994855_995236_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|995446_996172_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|996267_997218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997322_998372_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998509_999526_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001034_1001607_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001666_1002398_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002449_1003367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004174_1007354_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007350_1008733_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008802_1009054_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009199_1009814_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010000_1012061_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012190_1013042_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013038_1013665_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013661_1015416_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015708_1018414_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018426_1020088_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020100_1021891_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022112_1023288_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023330_1024281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024379_1025120_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025314_1027351_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027368_1028379_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028496_1029690_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029719_1030493_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030489_1031680_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031705_1032644_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032640_1034989_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035143_1035785_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037114_1037267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037298_1037847_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037865_1038351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038528_1039467_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039469_1039787_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039832_1040777_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042457_1043108_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043161_1043497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043493_1044354_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044370_1044652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044725_1044989_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045232_1046183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1046281_1047232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	1059450	1197161	4105638	holin,tRNA,transposase	uncultured_Mediterranean_phage(17.65%)	107	NA	NA
WP_010931363.1|1059450_1060467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061297_1062305_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062301_1063945_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063941_1064829_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064969_1065443_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065432_1066455_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068816_1069833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070165_1071101_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071150_1073031_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073097_1073442_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074719_1075793_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077598830.1|1079570_1080146_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_019248433.1|1080084_1082832_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082898_1084320_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084583_1085300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085384_1085702_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085742_1086156_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086157_1086517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086559_1088104_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088187_1089018_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089052_1090207_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1090249_1091122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091238_1093527_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094733_1095198_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095224_1096175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096192_1096330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096542_1097319_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097363_1098221_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1098242_1099259_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099393_1100434_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100628_1102710_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102945_1104439_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104669_1105464_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105684_1107043_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107039_1107882_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107900_1109787_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109728_1109980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110024_1110657_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110675_1111278_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111429_1112380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112960_1113668_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114026_1115013_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115152_1116166_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116162_1117113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117130_1117271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117225_1117684_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117720_1119034_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119051_1119423_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119419_1120883_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121023_1121752_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121733_1124583_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124795_1125746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125913_1126738_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126737_1127616_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128520_1129636_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129664_1130459_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130455_1132321_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132399_1133032_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133028_1133331_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133373_1134894_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1134900_1135656_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1135685_1136790_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1136892_1138593_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1138574_1139552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1139561_1140842_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1140834_1141530_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1141563_1142391_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1142672_1145903_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1146638_1150565_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1152464_1154261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1154260_1155229_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155298_1156144_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156211_1156766_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156812_1157763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157861_1158494_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158658_1160941_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161095_1163792_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163917_1164406_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166816_1169687_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169732_1170947_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171176_1172604_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172701_1173793_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173805_1174564_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174651_1175554_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175550_1176501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176630_1177614_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177668_1178391_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179869_1181225_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181305_1183681_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183845_1185921_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185982_1186777_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186884_1187847_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187834_1188590_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188697_1190335_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190402_1191140_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1191242_1191818_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191990_1192527_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192559_1192874_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192889_1193735_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193773_1195153_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195230_1196112_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196210_1197161_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	1317184	1385671	4105638	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317184_1318135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318903_1319542_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320431_1320878_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320959_1321661_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321661_1322429_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322425_1323664_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323663_1324590_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324692_1325808_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325823_1326774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327127_1327709_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327705_1328539_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328749_1330063_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1330239_1331121_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331140_1331992_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332044_1333133_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1333243_1334371_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334605_1335217_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335315_1336266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336487_1336865_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337012_1337510_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337506_1338034_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338167_1338983_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338995_1340177_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340224_1341118_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1341244_1341715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341840_1342668_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342696_1343473_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343469_1343745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343759_1344224_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1344235_1344937_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345046_1345547_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345629_1346808_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348435_1348771_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348958_1350407_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350464_1350809_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350915_1351455_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351547_1352498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1352515_1352755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1353236_1353668_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1353849_1354254_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355490_1355814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355816_1356704_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356736_1357162_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1357233_1357587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357826_1358333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358371_1359703_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359762_1360578_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360574_1361429_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364491_1367035_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368401_1370156_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370152_1372273_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1372277_1374473_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374469_1377811_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380613_1381564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381629_1381809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381925_1382681_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382667_1383813_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384720_1385671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	1446162	1501650	4105638	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446162_1447113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448314_1448761_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448753_1450229_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450225_1450981_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450973_1451984_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451973_1453650_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453962_1454295_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454308_1454704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454713_1455040_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455036_1455363_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455289_1456312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456308_1456659_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456706_1457135_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457142_1458516_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458656_1459034_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459296_1460604_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460664_1461495_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461491_1461980_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462021_1463542_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463585_1464062_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464865_1467463_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467492_1468314_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469040_1469790_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469973_1470852_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470949_1471666_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471680_1472241_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472407_1473172_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473191_1474049_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474045_1475245_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475284_1476619_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476671_1479008_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479133_1479697_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479705_1480797_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480868_1481324_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481324_1482119_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482115_1483297_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483283_1483889_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483885_1484659_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484670_1485498_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485659_1488023_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488090_1488810_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488933_1489359_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489393_1490344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490461_1491388_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491453_1492611_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492591_1493059_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493206_1494157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494173_1494608_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494597_1494948_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495144_1496299_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1496295_1497468_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497515_1498409_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498454_1498892_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498951_1499641_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1499650_1500601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500699_1501650_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	1794224	1842239	4105638	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930048.1|1794224_1795175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1795273_1796224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796322_1798923_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1799029_1800034_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1800142_1801483_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801523_1802552_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802747_1803293_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803289_1803850_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803948_1804899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804936_1805524_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805541_1805925_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1807284_1808577_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808711_1809752_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809849_1810866_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1811133_1811769_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811906_1812665_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1812649_1813429_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1813446_1814331_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814327_1815107_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1815133_1815811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1816099_1816852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816970_1818371_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818394_1818793_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818968_1819169_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819307_1820036_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1820169_1821585_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821588_1822452_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822464_1823214_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1823456_1825412_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1825393_1826062_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1826836_1827787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827935_1828274_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828331_1828493_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828524_1828725_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828990_1831564_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1831634_1834184_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836734_1837223_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837314_1838466_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838519_1839341_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839379_1840609_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840737_1841178_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1841288_1842239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	1889657	1945086	4105638	tRNA,transposase	uncultured_Caudovirales_phage(16.67%)	49	NA	NA
WP_005012067.1|1889657_1890608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1892165_1892816_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1892944_1894147_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1894224_1896261_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1896513_1897005_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1897220_1897733_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1897750_1898962_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1898999_1899410_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1899411_1899735_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1899737_1900250_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1900379_1902242_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1902251_1902593_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1902592_1902787_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1902911_1903805_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1903801_1904752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1904876_1905686_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1905886_1906837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1908110_1909328_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1910384_1911287_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1911363_1912236_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1912366_1912735_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1912792_1913839_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1914034_1915291_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1915295_1916633_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1916782_1917739_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1917841_1918774_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1918889_1919210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1919202_1919562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1919609_1921184_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1921236_1922181_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_005012067.1|1922876_1923827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930583.1|1924070_1925705_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1925701_1927057_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1927963_1929541_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1929544_1930819_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1930916_1931291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1933006_1934140_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1934177_1934783_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1934779_1935598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1935669_1938294_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1938280_1938535_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1938601_1939183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1939486_1939747_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1939912_1940536_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1940535_1941309_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1941305_1942514_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1942539_1943013_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1943086_1944037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1944135_1945086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	1948147	1995436	4105638	transposase,tRNA,protease	Klosneuvirus(22.22%)	47	NA	NA
WP_010930794.1|1948147_1951030_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1951352_1951778_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1951805_1952954_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1952950_1953457_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1953472_1954759_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1954808_1956104_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1956105_1956744_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1956749_1957907_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1957933_1959289_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1959292_1960363_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1960501_1960738_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1960825_1961932_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1961897_1963202_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1963220_1964120_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1964303_1965461_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1965537_1966833_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1966946_1967486_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1967763_1967976_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1967995_1970026_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1970051_1970246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1970711_1972994_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1973403_1973703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1973987_1974401_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1974360_1975311_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1975409_1976360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1976559_1977645_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1977660_1978422_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1978418_1979342_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1979440_1979965_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1979973_1980717_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1980812_1981052_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1981065_1981218_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1981303_1982794_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1982885_1983824_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1983820_1983997_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1983999_1984662_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1986283_1986427_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1986423_1987398_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1987292_1987547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1987564_1988515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1988511_1989786_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1989889_1991083_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1991079_1991733_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1991729_1993166_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1993153_1993513_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1994327_1994468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1994485_1995436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	2016129	2069369	4105638	transposase	Mycobacterium_phage(33.33%)	48	NA	NA
WP_005012067.1|2016129_2017080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2017732_2018683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2018701_2019049_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2019077_2020517_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2020535_2020931_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2021105_2021714_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2021726_2022545_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2022496_2023471_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2023499_2024561_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2024557_2026774_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2026787_2027246_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2027403_2027748_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2027904_2028810_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2028896_2029910_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2031889_2032906_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2033048_2034401_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2034575_2034872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2036009_2036960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|2037445_2037622_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2038306_2039278_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2039281_2040136_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2040154_2040976_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2041007_2041802_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2041850_2042456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2042413_2043247_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2043532_2045038_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2045079_2045862_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2045931_2046378_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2046374_2047601_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2047593_2047998_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2048157_2048460_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|2048456_2049407_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2049628_2050579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2050677_2051643_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062826582.1|2051780_2052680_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2055274_2056762_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2056772_2057969_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2058041_2059361_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2059357_2060233_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2060263_2061412_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2061429_2061744_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2061765_2062488_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2062487_2063306_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2063310_2063838_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2063843_2065100_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2065458_2066598_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2066675_2067548_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2068418_2069369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	2299293	2360641	4105638	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2299293_2300244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2300360_2301080_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2301252_2302239_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2302239_2302722_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2302725_2304009_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2304005_2304944_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2304940_2306650_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2306659_2307907_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2309517_2310807_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2311944_2312718_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2313379_2314123_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2314197_2314938_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2315133_2315970_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2316020_2316791_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2316840_2317893_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2317889_2318516_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2318512_2319547_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2319725_2320742_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2320840_2321791_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2324531_2325821_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2325939_2326377_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2326420_2327629_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2327775_2328240_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2328263_2329214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2330198_2330972_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2330968_2331967_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2332051_2332828_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2332983_2334588_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2334968_2336093_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2336219_2336843_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2336839_2338741_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2338789_2339584_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2339596_2340598_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2340594_2341044_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2341093_2341942_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2342039_2342582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2342625_2343576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2343731_2344058_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2344054_2344336_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2344335_2344815_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2344811_2346440_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2346436_2346781_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2346780_2349714_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2350872_2351823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2351921_2352218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2352324_2353242_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2353246_2353960_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2353973_2354945_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2356694_2357045_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2357048_2358236_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2358674_2359397_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2359690_2360641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	2381432	2452586	4105638	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2381432_2382383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2382935_2384561_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2384610_2385645_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2385647_2386994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2386990_2388505_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2388495_2389506_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2389979_2390921_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2390929_2391898_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2393437_2394406_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2394583_2395573_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2395619_2396378_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2396567_2397305_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2397403_2398354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2398538_2399321_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2399314_2400016_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2400255_2400858_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2402184_2403135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2403131_2404688_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2404680_2405454_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2405512_2406463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2406544_2407720_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2407733_2409791_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2409787_2410813_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2410824_2412114_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2412136_2413234_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2413230_2414121_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2414117_2416202_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2416233_2417403_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2417444_2418185_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2418184_2418955_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2419810_2420596_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2420622_2422707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2422874_2424830_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2425153_2425654_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2425752_2427279_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2427416_2428304_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2428318_2429272_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2429323_2431414_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2431429_2431816_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2434509_2435313_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2436606_2437509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2437573_2438350_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2438671_2439721_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2439844_2441515_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2441519_2442314_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2442412_2443363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2443382_2444288_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2444365_2445064_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2445223_2446168_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2446177_2447665_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2447664_2448732_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2448795_2450208_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2450393_2451614_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2451635_2452586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	2536787	2599088	4105638	tRNA,transposase	Salmonella_phage(18.18%)	54	NA	NA
WP_005012067.1|2536787_2537738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2537836_2538607_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2538603_2539275_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2539271_2539913_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2539925_2540846_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2541006_2542167_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2542208_2543159_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2543757_2543982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2544146_2545841_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2545962_2546232_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2546347_2546746_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2546756_2547713_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2547849_2548395_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2548415_2550365_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2550752_2551529_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2551534_2551927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2552348_2553299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2553295_2554393_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2554424_2555375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2557156_2558398_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2558409_2559183_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2559209_2560160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2560258_2561041_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2561129_2562356_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2563081_2564467_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2564485_2565091_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2565087_2566944_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2566940_2567741_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2567755_2568949_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2569016_2569991_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2570113_2571337_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2571447_2573652_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2573946_2574606_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2574613_2574820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2575158_2575914_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2576184_2576700_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2576972_2577290_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2577477_2577714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2578004_2579360_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2579406_2580747_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2580848_2581481_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2581480_2583850_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2583882_2584842_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2584828_2585515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2585511_2585844_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2585959_2586910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2586906_2588973_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2588972_2589245_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2589939_2590029_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2590028_2591813_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2591836_2594002_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2594012_2594612_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2597433_2598129_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2598137_2599088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	2685205	2725875	4105638	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2685205_2686156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2686266_2686449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686548_2687145_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687328_2688420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688919_2689330_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2689388_2689718_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2689735_2692153_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2692165_2693188_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2693262_2693622_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693637_2693835_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2694170_2695121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695315_2695765_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695761_2696712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696822_2698271_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2698385_2698631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698770_2699721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699965_2700679_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700801_2701029_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701323_2701962_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2702070_2703105_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2703101_2704052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704467_2704992_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704995_2705265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705463_2706525_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706608_2708243_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2708244_2709048_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2709076_2710036_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2710039_2711554_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711590_2712595_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2713026_2713497_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713532_2714144_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2714174_2714798_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714879_2716412_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2716446_2717664_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717731_2718763_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718759_2719929_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719922_2720603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720764_2721607_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721769_2722741_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722912_2723791_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723813_2724884_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724924_2725875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	2781340	2854210	4105638	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781340_2781757_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781867_2782500_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782528_2782972_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782993_2784085_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2784139_2784940_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2785075_2785696_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785835_2786309_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787448_2788399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788395_2796057_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796297_2800344_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800656_2801238_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2801234_2802533_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802612_2803641_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803901_2804852_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804848_2805799_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806115_2806721_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806774_2808088_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808162_2808633_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808632_2809421_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809431_2811084_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2811171_2812122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2813283_2813790_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813786_2814551_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814566_2814851_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814915_2815905_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2816076_2817006_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816977_2817664_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817697_2818243_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818287_2819553_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819549_2820452_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821633_2822578_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822672_2824190_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2824231_2825860_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825967_2826849_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829961_2830336_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830360_2830699_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830742_2832377_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832415_2833762_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833869_2835291_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835360_2835945_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2836047_2836998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837132_2838239_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2838249_2839347_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839491_2840697_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840703_2841225_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2841221_2841704_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841709_2841961_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841941_2842427_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842562_2846024_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2846041_2846926_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846935_2847367_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847613_2848117_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2848194_2849595_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849669_2850545_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850541_2851549_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852016_2852322_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852412_2853003_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853193_2854210_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	2857353	2924165	4105638	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2857353_2858304_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858402_2859353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859349_2860144_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2860175_2860880_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860954_2861755_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861751_2862159_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2862155_2862797_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862789_2864790_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2866050_2867382_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867378_2868329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2870035_2870302_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2871009_2871348_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875902_2876505_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876601_2877891_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877948_2878680_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878676_2879480_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879476_2880565_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880561_2881491_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881639_2882785_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882806_2883757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2883774_2883933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2884087_2887909_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2888065_2888734_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888738_2890412_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890430_2891750_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891754_2894070_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2894125_2896294_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2896290_2901471_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901569_2901884_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902111_2902357_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902451_2902970_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903069_2904275_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904390_2905788_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905904_2906483_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906555_2907947_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908114_2909065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909345_2909966_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909962_2910376_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910372_2911416_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911471_2911660_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911669_2912434_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912524_2913181_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2913272_2914031_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914056_2915658_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915858_2916863_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916963_2917227_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917344_2918121_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918711_2919662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922045_2923158_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2923214_2924165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	2954551	2993740	4105638	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2954551_2955502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2955519_2955669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2955622_2956519_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958796_2961022_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2961186_2962275_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2962231_2962885_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962932_2963730_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2964261_2965212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2965292_2966441_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966497_2967448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967546_2967852_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967880_2968315_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968316_2969561_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969557_2970268_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2970282_2971194_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971556_2971961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971957_2972416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972422_2973331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973327_2974194_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2974180_2975008_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2975018_2976146_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2977223_2978462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978503_2979766_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979772_2980525_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980576_2980762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2981037_2981502_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981533_2982193_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982337_2984446_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984442_2985393_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985496_2986117_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2986220_2986961_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2988095_2989220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2989265_2989634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989875_2990826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991861_2992404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992601_2992772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992789_2993740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	3379237	3432978	4105638	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379237_3380188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3380592_3381237_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3381261_3381846_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3381946_3382564_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3382566_3384282_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3384278_3384587_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3384603_3385221_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3385265_3385568_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3385668_3386523_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3386710_3386935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387104_3387377_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3387794_3388202_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3388571_3389366_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3389466_3390702_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3390770_3391787_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3391798_3393175_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393171_3394368_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3394364_3395903_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3395899_3397159_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399099_3400050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3400816_3401911_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3401903_3403238_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403191_3403875_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3403900_3405064_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3405060_3406062_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406061_3406934_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3406930_3407680_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3407676_3408468_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3408464_3409604_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3409879_3410665_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3410698_3411481_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3411484_3411874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3413013_3413877_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3413912_3415001_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3414997_3415948_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3416301_3419280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420206_3421085_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423033_3423984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3423980_3424448_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3424490_3425261_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3425281_3426082_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426092_3427502_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3427596_3428382_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3428621_3429638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3429745_3430138_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3430275_3430956_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3430960_3431932_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432027_3432978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	3439133	3498433	4105638	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3439133_3440897_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441008_3441887_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3441999_3442815_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3442818_3443070_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443154_3444171_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3444501_3444723_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447083_3448001_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3448498_3449707_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3449786_3451358_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3451475_3452411_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3452599_3453544_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454111_3459829_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3459834_3460962_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461017_3461644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3461915_3462932_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463027_3463738_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3463734_3464724_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3464819_3466451_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3466453_3467191_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3467346_3468219_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3468568_3469708_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3469704_3470364_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3470435_3471068_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471097_3471616_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3471626_3472736_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3472782_3473637_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3473638_3474541_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3475763_3476714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3478470_3479460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3479635_3480424_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3480420_3481452_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3481470_3482034_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482089_3483610_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3483873_3484578_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3484585_3485314_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3485428_3485803_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3485845_3487135_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487131_3488301_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3488297_3489137_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489196_3490132_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490144_3491095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491193_3492156_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492187_3492547_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3492671_3493574_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3493575_3495348_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3495382_3496159_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3497482_3498433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	3513371	3572493	4105638	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
WP_010929584.1|3513371_3514322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3514450_3515584_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3515627_3516533_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3516535_3518236_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518232_3519153_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519160_3520138_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520196_3521231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3523205_3523442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3523568_3524432_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3524520_3525342_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3525421_3526159_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3526155_3527148_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3527300_3527924_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3527968_3529117_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3531440_3532391_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3532731_3533682_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3533780_3534731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535027_3535525_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3535567_3537343_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3537350_3538217_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538223_3538958_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540127_3540922_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541211_3541802_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3541835_3543164_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543238_3544384_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3544495_3545494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3545456_3545891_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3547407_3548292_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3548288_3549494_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3549490_3550351_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3550463_3552254_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3552294_3552939_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3552960_3553269_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3553434_3554721_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3556154_3557105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|3557203_3558154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560105_3561320_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561425_3562415_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562411_3563020_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563032_3563662_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563658_3564279_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564310_3565102_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565953_3566409_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566427_3567354_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567407_3568694_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569624_3570497_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570493_3571444_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571542_3572493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013894	Bordetella pertussis strain J149 chromosome, complete genome	4105638	4004706	4069618	4105638	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4004706_4005192_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005280_4005418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005410_4006391_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006657_4007467_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007506_4008187_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008180_4008639_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008650_4009013_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009095_4009779_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009834_4010143_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010161_4010476_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010472_4012947_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012954_4014346_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014342_4014528_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014506_4015208_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015204_4016026_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016006_4017131_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017123_4018143_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018348_4019239_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019483_4020275_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020357_4020732_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020709_4022119_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022111_4023494_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023828_4025433_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025510_4026482_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026492_4027419_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027809_4028760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028929_4030156_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030355_4031222_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031214_4032177_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032277_4033228_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033326_4034277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034375_4035326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035322_4036816_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036812_4039920_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039916_4042985_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042981_4044232_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044412_4045165_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045206_4045851_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045859_4046840_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046939_4047683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047765_4048113_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048210_4049053_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049097_4049985_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050011_4050200_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050297_4051755_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051741_4053268_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053286_4053754_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053753_4054776_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054896_4055637_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055691_4056792_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056793_4057984_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058103_4059120_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059438_4060110_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060106_4061015_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061226_4061874_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065734_4066802_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066812_4067622_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067711_4068485_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068485_4068650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068667_4069618_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
