The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	27282	70036	4107607	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	77634	136108	4107607	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	164894	225405	4107607	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	233337	286925	4107607	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_077068984.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	390858	448367	4107607	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	590601	651792	4107607	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590601_591552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592027_592918_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592914_593736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593935_594427_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594445_595519_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595565_596669_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596744_597365_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597385_597895_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597949_598201_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598264_599398_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599405_599792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599788_602308_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602736_603075_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603071_603578_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603639_604440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604550_605492_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605585_607121_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608800_610651_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610654_611488_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611487_612429_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612680_613652_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613793_616082_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616388_617297_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617351_618317_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618391_620053_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620124_620835_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620801_620966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620983_621934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622632_623016_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623073_623676_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623693_624095_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624210_625122_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625118_625700_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626494_627229_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627269_628319_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628466_629045_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629431_630409_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630502_634897_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635097_635946_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636104_636917_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636972_637923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638021_638822_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638883_639267_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639278_640631_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640918_641248_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641250_642000_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642182_643103_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|643149_643362_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643384_643807_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643823_644924_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645020_646538_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646613_647453_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647474_648347_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648437_649532_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649825_650776_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650850_651792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	657116	703307	4107607	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657116_658142_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658182_658422_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658491_660081_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660080_660629_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660709_661282_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661300_662212_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662285_663254_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663376_664450_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664454_666275_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666351_667302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667390_667726_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667859_668510_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668531_669950_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670019_670775_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670743_671502_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671512_672394_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672410_673118_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673120_673879_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674088_675831_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675823_676348_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676387_677182_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677349_678423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678521_679472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679723_679930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680001_680613_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|681167_681419_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681411_682101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682118_682340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682357_683308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683947_684433_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684419_685697_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685699_687118_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|687146_688202_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688207_688450_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688572_689175_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689603_690554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691228_691480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691542_692025_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692038_692227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692226_692622_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692618_693017_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693013_693436_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693443_693944_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694198_694717_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694726_695056_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695073_695364_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695389_698002_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698011_698371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698438_698972_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698968_699358_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699350_703307_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	709473	763403	4107607	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709473_711204_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711256_711685_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711687_712368_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712367_712826_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712862_713837_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713853_715170_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715201_715699_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715785_716475_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716474_717524_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717520_718315_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718483_718834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718809_719367_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720496_721447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723584_724814_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724816_726259_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726363_727509_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727540_728338_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728362_729922_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729918_732291_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732400_733504_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733503_734196_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734339_735041_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735025_735403_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736134_737085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737244_738117_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738457_738676_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738715_740095_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740136_741534_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741573_743226_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743229_744114_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744113_745055_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745133_746753_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746919_747735_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747802_748372_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748372_749323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749977_751075_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751108_752374_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752531_753482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753725_754316_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754331_756776_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756895_757867_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757998_758523_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758482_759433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759654_761850_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761922_762330_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762452_763403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	885992	953968	4107607	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885992_887009_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887205_888189_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889787_891176_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891206_892196_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892306_893539_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893820_894621_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894643_896875_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897662_898109_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898130_898877_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899020_899998_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900631_901243_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901236_902454_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902594_903545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903541_904261_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904381_906541_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906631_906901_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906989_907196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907194_907722_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907740_908520_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908687_909704_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909776_910268_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910278_911994_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|913157_914108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914104_915937_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916335_916995_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917522_918203_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918484_919201_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919215_920517_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922661_925550_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925773_927126_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|927154_927676_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927672_929127_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|929161_929410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929515_930391_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930416_931472_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931484_932276_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932308_933679_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934855_935806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935858_936080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936239_936452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936571_937690_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937786_938002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938195_938447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938559_939510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939506_939890_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939944_941759_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941908_942736_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942781_943762_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943758_943971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943967_945149_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945312_946047_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946048_948661_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948796_950710_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951325_951736_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951833_952919_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953017_953968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1046462	1087105	4107607	holin,tRNA,transposase	uncultured_Mediterranean_phage(50.0%)	34	NA	NA
WP_005012067.1|1046462_1047413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047711_1048449_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048884_1049208_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049242_1049803_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049923_1050799_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050811_1051759_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051860_1052154_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052180_1054238_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054252_1054753_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054826_1056533_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057396_1058449_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058501_1058891_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058899_1059532_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059631_1060648_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061478_1062486_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062482_1064126_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064122_1065010_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1065150_1065624_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065613_1066636_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066632_1068060_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068997_1070014_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070346_1071282_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071331_1073212_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073278_1073623_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073767_1074904_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074900_1075974_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076131_1077568_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077658_1078300_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078635_1079652_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081694_1082645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083847_1085269_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085532_1086249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086333_1086651_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086691_1087105_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 11
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1096173	1158712	4107607	tRNA,transposase	Planktothrix_phage(18.18%)	50	NA	NA
WP_005013747.1|1096173_1097124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1097141_1097279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097491_1098268_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098312_1099170_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099191_1100208_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100342_1101383_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101577_1103659_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103894_1105388_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105618_1106413_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106633_1107992_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107988_1108831_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108849_1110736_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110677_1110929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110973_1111606_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111624_1112227_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112378_1113329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113909_1114617_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114975_1115962_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116101_1117115_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117111_1118062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118079_1118220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1118174_1118633_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118669_1119983_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120000_1120372_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120368_1121832_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121972_1122701_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122682_1125532_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125744_1126695_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126862_1127687_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127686_1128565_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129469_1130585_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130613_1131408_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131404_1133270_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133348_1133981_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133977_1134280_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134322_1135843_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135849_1136605_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136634_1137739_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137841_1139542_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139523_1140501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140510_1141791_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141783_1142479_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142512_1143340_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143621_1146852_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147587_1151514_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153413_1155210_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155209_1156178_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156247_1157093_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1157160_1157715_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157761_1158712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1176499	1242493	4107607	tRNA,transposase	Bacillus_phage(25.0%)	52	NA	NA
WP_005012067.1|1176499_1177450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177579_1178563_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178617_1179340_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180818_1182174_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182254_1184630_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184794_1186870_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186931_1187726_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187833_1188796_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188783_1189539_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189646_1191284_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191351_1192089_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192191_1192767_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192939_1193476_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193508_1193823_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193838_1194684_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194722_1196102_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196179_1197061_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1197159_1198110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198106_1198517_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198624_1199479_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199471_1200434_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200479_1201604_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201709_1202588_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202712_1203492_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203645_1205067_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205501_1207199_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207425_1208367_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208693_1209440_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209447_1210374_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210495_1211413_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211452_1212406_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212430_1213009_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214682_1215291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215368_1215722_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215805_1216795_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216791_1216980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216997_1217948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218034_1218985_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218981_1219932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220192_1221221_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221300_1222599_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222595_1223177_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223489_1227536_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227776_1235438_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235434_1236385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1237524_1237998_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1238137_1238758_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1238893_1239694_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1239748_1240840_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1240861_1241305_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1241333_1241966_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1242076_1242493_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 13
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1270860	1328071	4107607	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270860_1271811_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275557_1276169_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276391_1277852_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277948_1279541_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279894_1280152_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1280153_1281494_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281589_1282279_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282291_1283722_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285446_1286268_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286278_1287850_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287878_1288856_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288882_1289686_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289682_1290477_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290484_1291720_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291733_1292147_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292896_1293847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294468_1296196_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296307_1297666_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297722_1297941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297958_1298909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298949_1300020_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300042_1300921_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301092_1302064_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302226_1303069_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303230_1303911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303904_1305074_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1305070_1306102_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1306169_1307387_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307421_1308954_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309034_1309658_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309688_1310300_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310335_1310806_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311237_1312242_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312278_1313793_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313796_1314756_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314784_1315588_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315589_1317224_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317307_1318369_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318567_1318837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318840_1319365_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319780_1320731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320727_1321762_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321870_1322509_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322803_1323031_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1323153_1323867_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324111_1325062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325201_1325447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325561_1327010_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1327120_1328071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1418303	1470456	4107607	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418303_1419254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419271_1419424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419420_1419774_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419786_1420149_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420190_1420616_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420818_1422075_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422273_1423254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423403_1424645_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424743_1425694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425702_1426398_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429219_1429819_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429829_1431995_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432018_1433803_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433802_1433892_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434586_1434859_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434858_1436925_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436921_1437872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437970_1438921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439036_1439369_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439365_1440052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440038_1440998_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441030_1443400_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443399_1444032_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444133_1445474_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445520_1446876_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1447166_1447403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447590_1447908_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448180_1448696_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448966_1449722_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450060_1450267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450274_1450934_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451228_1453433_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453543_1454767_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454889_1455864_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455931_1457125_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1457139_1457940_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457936_1459793_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459789_1460395_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460413_1461799_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462524_1463751_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463839_1464622_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464720_1465671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465697_1466471_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466482_1467724_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469505_1470456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1514381	1582466	4107607	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514381_1514870_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514987_1515566_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515671_1516040_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1516138_1517089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517095_1518208_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518894_1520097_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520300_1522961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522973_1526378_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527045_1529271_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529317_1529644_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529694_1530303_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530401_1531352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531421_1532186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532182_1532719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532885_1533737_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533796_1534423_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534419_1535370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535468_1536581_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536570_1537572_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537677_1539189_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539185_1540490_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540601_1541162_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541429_1541984_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542439_1542655_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542909_1545507_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545503_1546691_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547348_1547963_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548051_1549173_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549190_1550096_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550988_1551939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552120_1552873_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552941_1553601_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553597_1554326_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554338_1556618_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556642_1556846_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556887_1557520_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557655_1558573_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558569_1559283_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559520_1560291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560295_1560895_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1561139_1562630_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562688_1562973_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563538_1564465_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564601_1565342_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565508_1566885_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567066_1567972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569623_1571426_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571543_1572194_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572292_1573243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573264_1574485_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574670_1576083_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1576146_1577214_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577213_1578701_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578710_1579655_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579814_1580513_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580590_1581496_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581515_1582466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1618415	1674006	4107607	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618415_1619366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619424_1620198_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620190_1621747_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621743_1622694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624020_1624623_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624862_1625564_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625557_1626340_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626524_1627475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627573_1628311_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628500_1629259_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629305_1630295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630472_1631441_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632980_1633949_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633957_1634899_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635372_1636383_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636373_1637888_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637884_1639231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639233_1640268_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640317_1641943_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642495_1643446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643550_1644498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644551_1646366_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646358_1647033_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1647162_1650237_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650250_1650550_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650864_1651488_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651731_1652601_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652578_1653523_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653608_1654535_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654647_1655427_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655417_1656614_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656644_1657595_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657816_1658506_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658570_1659326_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659377_1660370_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660379_1661333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661448_1662411_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663812_1664241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664237_1665188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665481_1666204_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666642_1667830_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667833_1668184_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669933_1670905_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670918_1671632_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671636_1672554_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672660_1672957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673055_1674006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1831771	1891041	4107607	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831771_1832722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832846_1833656_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833856_1834807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836080_1837298_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838354_1839257_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839333_1840206_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840336_1840705_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840762_1841809_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842004_1843261_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843265_1844603_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844752_1845709_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845811_1846744_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846859_1847180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847172_1847532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847579_1849154_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849206_1850151_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850168_1850999_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850991_1852626_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852622_1853978_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854884_1856462_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856465_1857740_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857837_1858212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859927_1861061_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861098_1861704_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861700_1862519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862590_1865215_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865201_1865456_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865522_1866104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866407_1866668_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866833_1867457_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867456_1868230_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868226_1869435_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869460_1869934_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870007_1870958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871056_1872007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872105_1873455_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874220_1874976_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875068_1877951_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878273_1878699_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878726_1879875_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879871_1880378_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880393_1881680_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881729_1883025_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883026_1883665_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883670_1884828_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884854_1886210_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886213_1887284_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887422_1887659_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887746_1888853_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888818_1890123_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1890141_1891041_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1901281	1945604	4107607	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901281_1902232_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902330_1903281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903480_1904566_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904581_1905343_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905339_1906263_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906361_1906886_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906894_1907638_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907733_1907973_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907986_1908139_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908224_1909715_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909806_1910745_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910741_1910918_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910920_1911583_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913204_1913348_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913344_1914319_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914213_1914468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914485_1915436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915432_1916707_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916810_1918004_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918000_1918654_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918650_1920087_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920074_1920434_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921248_1921389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921406_1922357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923402_1925268_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925525_1927046_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1927133_1927784_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928732_1930028_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930049_1930934_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931032_1931908_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931897_1932254_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932384_1933359_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933488_1933668_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933765_1934290_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934300_1935137_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935249_1935621_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935617_1936169_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936184_1937876_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937924_1938605_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938852_1939317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939486_1940416_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940428_1941076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1941149_1942967_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943050_1944001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944653_1945604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	1975377	2039746	4107607	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975377_1976328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976549_1977500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977598_1978564_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978701_1979601_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982195_1983683_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983693_1984890_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984962_1986282_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986278_1987154_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987184_1988333_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988350_1988665_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988686_1989409_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989408_1990227_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990231_1990759_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990764_1992021_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992379_1993519_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993596_1994469_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995339_1996290_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996249_1996885_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997244_1998567_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998885_1999707_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2001131_2001704_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001743_2003573_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003535_2004594_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004631_2005093_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005177_2005924_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007414_2010645_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010711_2012043_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012295_2012670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012772_2013951_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013961_2014552_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014662_2015469_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015494_2016289_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017289_2018264_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018422_2018935_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2019091_2020063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021807_2022614_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022610_2023912_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023862_2024627_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024740_2025511_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025595_2026783_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026855_2027230_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027330_2028593_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028589_2029447_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029619_2030621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2031072_2032023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033586_2034738_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2035106_2035343_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035406_2035574_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035687_2037583_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037746_2038697_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038795_2039746_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	2171275	2220928	4107607	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171275_2172226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172324_2174319_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174378_2175344_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175333_2178195_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178197_2178704_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178808_2180017_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180018_2180957_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181118_2181592_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181588_2182539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182649_2183090_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183218_2184448_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184486_2185308_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185361_2186513_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186604_2187093_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189643_2192193_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192263_2194837_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195102_2195303_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195334_2195496_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195553_2195892_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196040_2196991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197765_2198434_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198415_2200371_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200613_2201363_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201375_2202239_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202242_2203658_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203791_2204520_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204658_2204859_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205034_2205433_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205456_2206857_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206975_2207728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2208016_2208694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208720_2209500_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209496_2210381_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210398_2211178_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2211162_2211921_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2212058_2212694_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212961_2213978_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214075_2215116_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215250_2216543_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217902_2218286_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218303_2218891_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218928_2219879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219977_2220928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	2512046	2550636	4107607	protease,transposase	Planktothrix_phage(14.29%)	36	NA	NA
WP_005012808.1|2512046_2512997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2513014_2513179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2513175_2514870_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514866_2515952_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2515999_2516899_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516909_2517554_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518575_2521818_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521828_2522983_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523209_2524172_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524270_2525221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525319_2526270_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2526279_2526969_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2527028_2527466_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2527511_2528405_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2528452_2529625_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2529621_2530776_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2530972_2531323_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2531312_2531747_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2531763_2532714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2532861_2533329_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2533309_2534467_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2534532_2535459_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2535576_2536527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811761.1|2536561_2536987_-	membrane protein	NA	NA	NA	NA	NA
WP_010930359.1|2537110_2537830_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_010930358.1|2537897_2540261_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930357.1|2540422_2541250_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003811768.1|2541261_2542035_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_003811770.1|2542031_2542637_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_010930356.1|2542623_2543805_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010930355.1|2543801_2544596_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|2544596_2545052_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930354.1|2545123_2546215_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811782.1|2546223_2546787_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930353.1|2546912_2549249_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_010930352.1|2549301_2550636_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 23
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	2578805	2645305	4107607	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578805_2579756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2580125_2580698_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580700_2581711_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581703_2582204_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582214_2582556_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2582624_2583359_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583375_2583645_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583667_2584456_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584502_2585519_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585735_2587178_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587356_2588976_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2589096_2590917_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2590995_2592528_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2592561_2594208_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594277_2595300_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595317_2596451_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596453_2597143_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2597142_2597928_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597971_2598736_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598774_2600196_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600261_2600966_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2601013_2601433_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601445_2601853_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2602036_2602747_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602873_2603164_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603181_2603664_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2608169_2609324_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609629_2610646_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610892_2611681_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611747_2612428_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612424_2613195_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2613293_2614244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614299_2615217_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615227_2616406_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616425_2617421_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2619009_2619618_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619605_2620646_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620663_2621626_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621622_2622816_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622812_2623610_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623635_2624622_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624640_2626680_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2626881_2627562_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627575_2628487_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628483_2629062_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629200_2630106_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2630113_2633533_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633520_2636121_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2637076_2637709_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2638102_2638861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2638857_2640060_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640247_2641198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2642105_2643251_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643237_2643993_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2644109_2644289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644354_2645305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	2808909	2863426	4107607	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808909_2809860_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810188_2810794_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810847_2812161_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812235_2812706_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812705_2813494_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813504_2815157_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815244_2816195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817356_2817863_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817859_2818624_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818639_2818924_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818988_2819978_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2820149_2821079_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821050_2821737_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821770_2822316_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822360_2823626_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823622_2824525_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825706_2826651_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826745_2828263_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828304_2829933_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830040_2830922_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834034_2834409_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834433_2834772_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834815_2836450_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836488_2837835_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837942_2839364_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839433_2840018_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2840120_2841071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841205_2842312_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842322_2843420_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843564_2844770_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844776_2845298_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845294_2845777_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845782_2846034_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846014_2846500_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846635_2850097_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2850114_2850999_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851008_2851440_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851686_2852190_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852267_2853668_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853742_2854618_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854614_2855622_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856089_2856395_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856485_2857076_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857266_2858283_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858474_2860811_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860893_2861328_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861426_2862377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862475_2863426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	2871451	2928237	4107607	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871451_2872402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874108_2874375_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875082_2875421_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879974_2880577_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880673_2881963_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882020_2882752_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882748_2883552_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883548_2884637_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884633_2885563_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885711_2886857_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886878_2887829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_158322896.1|2887846_2888005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2888159_2891981_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2892137_2892806_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892810_2894484_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894502_2895822_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895826_2898142_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898197_2900366_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900362_2905543_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905641_2905956_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906183_2906429_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906523_2907042_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2907141_2908347_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908462_2909860_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909976_2910555_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910627_2912019_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912186_2913137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913417_2914038_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914034_2914448_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914444_2915488_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915543_2915732_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915741_2916506_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916596_2917253_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917344_2918103_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2918128_2919730_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919930_2920935_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921035_2921299_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921416_2922193_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922783_2923734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2926117_2927230_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927286_2928237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	2958623	3002314	4107607	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958623_2959574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959591_2959741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959694_2960591_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962868_2965094_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965258_2966347_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966303_2966957_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967004_2967802_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968333_2969284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969364_2970513_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970569_2971520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971618_2971924_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971952_2972387_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972388_2973633_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973629_2974340_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974354_2975266_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975628_2976033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976029_2976488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976494_2977403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977399_2978266_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978252_2979080_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979090_2980218_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981295_2982534_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982575_2983838_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983844_2984597_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984648_2984834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985109_2985574_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985605_2986265_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986409_2988518_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988514_2989465_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989568_2990189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990292_2991033_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992167_2993292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993337_2993706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993947_2994898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995933_2996476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996673_2996844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996861_2997812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997808_2998717_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998843_2999680_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000192_3001302_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001363_3002314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	3402121	3447193	4107607	tRNA,transposase	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3402121_3403072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403838_3404933_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404925_3406260_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406213_3406897_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406922_3408086_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3408082_3409084_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409083_3409956_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409952_3410702_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410698_3411490_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411486_3412626_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412901_3413687_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413720_3414503_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414506_3414896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416035_3416899_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416934_3418023_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418019_3418970_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419323_3422302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423228_3424107_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426055_3427006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427002_3427470_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427512_3428283_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428303_3429104_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429114_3430524_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430618_3431404_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431643_3432660_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432767_3433160_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433297_3433978_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433982_3434954_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435049_3436000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3437504_3438206_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3438205_3439630_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3440699_3442040_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3442155_3443919_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444030_3444909_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445021_3445837_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445840_3446092_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446176_3447193_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	3464937	3517342	4107607	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3464937_3465954_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466049_3466760_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466756_3467746_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467841_3469473_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469475_3470213_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470368_3471241_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471590_3472730_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472726_3473386_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473457_3474090_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474119_3474638_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474648_3475758_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475804_3476659_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476660_3477563_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478785_3479736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481490_3482480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482655_3483444_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483440_3484472_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484490_3485054_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485109_3486630_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486893_3487598_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487605_3488334_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488448_3488823_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488865_3490155_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3490151_3491321_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491317_3492157_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492216_3493152_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493164_3494115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494213_3495176_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495207_3495567_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495691_3496594_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496595_3498368_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498402_3499179_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500502_3501453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3502304_3502625_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3502697_3503579_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3503695_3503938_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3504075_3504546_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3504558_3505098_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3505132_3506674_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3506772_3507678_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3507720_3509121_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3509130_3509553_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3509735_3510620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3510695_3511772_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3512078_3514181_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3514223_3516293_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3516391_3517342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	3534460	3588261	4107607	tRNA,transposase	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3534460_3535411_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535751_3536702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536800_3537751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538047_3538545_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538587_3540363_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540370_3541237_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541243_3541978_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3543147_3543942_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544231_3544822_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544855_3546184_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546258_3547404_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547515_3548514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548476_3548911_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550427_3551312_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551308_3552514_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552510_3553371_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553483_3555274_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555314_3555959_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3555980_3556289_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556454_3557741_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3559174_3560125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562076_3563291_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563396_3564386_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564382_3564991_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565003_3565633_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565629_3566250_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566281_3567073_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567924_3568380_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568398_3569325_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569378_3570665_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571595_3572468_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572464_3573415_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573513_3574464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3574568_3574799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3574925_3575315_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3575331_3577713_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3577705_3579082_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3579097_3580093_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3580111_3581104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3581344_3581905_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3581909_3582236_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3582272_3583085_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3583095_3584178_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3584264_3585539_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3586261_3587212_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3587310_3588261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013893	Bordetella pertussis strain J124 chromosome, complete genome	4107607	4006675	4071587	4107607	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006675_4007161_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007249_4007387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007379_4008360_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008626_4009436_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009475_4010156_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4010149_4010608_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010619_4010982_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011064_4011748_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011803_4012112_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4012130_4012445_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012441_4014916_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014923_4016315_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016311_4016497_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016475_4017177_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017173_4017995_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017975_4019100_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019092_4020112_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020317_4021208_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021452_4022244_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022326_4022701_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022678_4024088_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024080_4025463_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025797_4027402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027479_4028451_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028461_4029388_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029778_4030729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030898_4032125_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032324_4033191_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033183_4034146_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034246_4035197_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035295_4036246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036344_4037295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037291_4038785_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038781_4041889_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041885_4044954_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044950_4046201_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046381_4047134_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047175_4047820_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047828_4048809_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048908_4049652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049734_4050082_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050179_4051022_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051066_4051954_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051980_4052169_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052266_4053724_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053710_4055237_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055255_4055723_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055722_4056745_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056865_4057606_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057660_4058761_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058762_4059953_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060072_4061089_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061407_4062079_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062075_4062984_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063195_4063843_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067703_4068771_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068781_4069591_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069680_4070454_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070454_4070619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070636_4071587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
