The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	27282	70036	4109522	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	77634	136108	4109522	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	164892	225402	4109522	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194403_195354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195456_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197376_198477_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198558_198933_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198992_201857_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206740_207064_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207168_208209_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209361_209637_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210337_211024_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211222_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212055_212781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219052_221896_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	233334	286922	4109522	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233334_234285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236367_237165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240333_241377_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241547_243650_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251621_253511_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253597_254236_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254378_255764_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265571_266522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267752_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274125_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278075_278291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280423_281272_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	390855	448364	4109522	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390855_391806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400103_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401155_402139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403582_404761_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404928_406635_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407568_409158_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411328_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412384_413335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413423_414338_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415083_416007_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416012_416468_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417526_417796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417755_419375_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419371_420430_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421146_422124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423521_425033_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425048_426362_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430320_431271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431402_431801_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439208_439994_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442145_443318_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447413_448364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	590418	651609	4109522	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590418_591369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591844_592735_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592731_593553_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593752_594244_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594262_595336_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595382_596486_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596561_597182_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597202_597712_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597766_598018_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598081_599215_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599222_599609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599605_602125_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602553_602892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602888_603395_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603456_604257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604367_605309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605402_606938_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608617_610468_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610471_611305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611304_612246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612497_613469_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613610_615899_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616205_617114_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617168_618134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618208_619870_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619941_620652_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620800_621751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622449_622833_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622890_623493_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624027_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627086_628136_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628283_628862_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636789_637740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637838_638639_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638700_639084_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639095_640448_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640735_641065_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641067_641817_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641999_642920_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642966_643179_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643201_643624_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643640_644741_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644837_646355_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646430_647270_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647291_648164_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648254_649349_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649642_650593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650667_651609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	656933	703124	4109522	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656933_657959_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657999_658239_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658308_659898_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659897_660446_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660526_661099_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661117_662029_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662102_663071_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663193_664267_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664271_666092_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666168_667119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667207_667543_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667676_668327_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668348_669767_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669836_670592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670560_671319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671329_672211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672227_672935_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672937_673696_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673905_675648_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675640_676165_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676204_676999_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677166_678240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678338_679289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679540_679747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679818_680430_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680984_681236_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681228_681918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|682174_683125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683764_684250_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684236_685514_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685516_686935_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686963_688019_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688024_688267_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688389_688992_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689420_690371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691045_691297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691359_691842_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691855_692044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692043_692439_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692435_692834_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692830_693253_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693260_693761_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694015_694534_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694543_694873_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694890_695181_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695206_697819_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697828_698188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698255_698789_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698785_699175_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699167_703124_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	709290	763220	4109522	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709290_711021_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711073_711502_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711504_712185_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712184_712643_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712679_713654_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713670_714987_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715018_715516_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715602_716292_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716291_717341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717337_718132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718300_718651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718626_719184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720313_721264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723401_724631_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724633_726076_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726180_727326_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727357_728155_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728179_729739_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729735_732108_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732217_733321_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733320_734013_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734156_734858_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734842_735220_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005013747.1|735951_736902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737061_737934_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738274_738493_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738532_739912_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739953_741351_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741390_743043_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743046_743931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743930_744872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744950_746570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746736_747552_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747619_748189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748189_749140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749794_750892_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750925_752191_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|752348_753299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757815_758340_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758299_759250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759471_761667_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761739_762147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	885809	953785	4109522	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885809_886826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894460_896692_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902411_903362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903358_904078_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904198_906358_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906448_906718_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906806_907013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907011_907539_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907557_908337_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908504_909521_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909593_910085_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910095_911811_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912974_913925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913921_915754_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929332_930208_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930233_931289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934672_935623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938376_939327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939761_941576_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010929969.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	997314	1069831	4109522	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997314_998265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998369_999419_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999556_1000573_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002081_1002654_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002713_1003445_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003496_1004414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005221_1008401_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008397_1009780_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009849_1010101_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010246_1010861_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011047_1013108_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013237_1014089_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014085_1014712_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014708_1016463_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016755_1019461_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019473_1021135_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021147_1022938_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023159_1024335_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024377_1025328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025426_1026167_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026361_1028398_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028415_1029426_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029543_1030737_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030766_1031540_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031536_1032727_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032752_1033691_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033687_1036036_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036190_1036832_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038161_1038314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038345_1038894_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038912_1039398_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039575_1040514_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040516_1040834_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040879_1041824_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043504_1044155_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044208_1044544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044540_1045401_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045417_1045699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045772_1046036_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046279_1047230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047528_1048266_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048701_1049025_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049059_1049620_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049740_1050616_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050628_1051576_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051677_1051971_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051997_1054055_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054069_1054570_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054643_1056350_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057213_1058266_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058318_1058708_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058716_1059349_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059448_1060465_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061295_1062303_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062299_1063943_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063939_1064827_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064967_1065441_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065430_1066453_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066449_1067877_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068814_1069831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1073584	1135660	4109522	holin,transposase,tRNA	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1073584_1074721_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074717_1075791_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075948_1077385_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077475_1078117_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|1078452_1079469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081511_1082462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083664_1085086_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085349_1086066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086150_1086468_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086508_1086922_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086923_1087283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087325_1088870_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088953_1089784_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089818_1090973_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091015_1091888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092004_1094293_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095499_1095964_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095990_1096941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096958_1097096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097308_1098085_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098129_1098987_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099008_1100025_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100159_1101200_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101394_1103476_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103711_1105205_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105435_1106230_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106450_1107809_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107805_1108648_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108666_1110553_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110494_1110746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110790_1111423_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111441_1112044_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112195_1113146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113726_1114434_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114792_1115779_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115918_1116932_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116928_1117879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117991_1118450_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118486_1119800_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119817_1120189_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120185_1121649_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121789_1122518_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122499_1125349_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125561_1126512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126679_1127504_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127503_1128382_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129286_1130402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130430_1131225_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131221_1133087_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133165_1133798_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133794_1134097_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134139_1135660_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1153230	1219749	4109522	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153230_1155027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155026_1155995_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156064_1156910_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156977_1157532_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157578_1158529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158627_1159260_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159424_1161707_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161861_1164558_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164683_1165172_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167582_1170453_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170498_1171713_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171942_1173370_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173467_1174559_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174571_1175330_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175417_1176320_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176316_1177267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177396_1178380_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178434_1179157_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180635_1181991_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182071_1184447_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184611_1186687_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186748_1187543_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187650_1188613_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188600_1189356_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189463_1191101_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191168_1191906_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192008_1192584_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192756_1193293_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193325_1193640_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193655_1194501_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194539_1195919_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195996_1196878_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196976_1197927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197923_1198334_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198441_1199296_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199288_1200251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200296_1201421_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201526_1202405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202529_1203309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203462_1204884_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205318_1207016_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207242_1208184_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208510_1209257_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209264_1210191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210312_1211230_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211269_1212223_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212247_1212826_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214499_1215108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215185_1215539_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215622_1216612_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216814_1217765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217851_1218802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218798_1219749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1270677	1327888	4109522	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1270677_1271628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275374_1275986_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276208_1277669_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277765_1279358_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279711_1279969_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279970_1281311_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281406_1282096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282108_1283539_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285263_1286085_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286095_1287667_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287695_1288673_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288699_1289503_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289499_1290294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290301_1291537_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291550_1291964_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292713_1293664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294285_1296013_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296124_1297483_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297775_1298726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298766_1299837_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299859_1300738_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300909_1301881_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302043_1302886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303047_1303728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303721_1304891_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304887_1305919_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305986_1307204_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307238_1308771_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308851_1309475_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309505_1310117_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310152_1310623_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311054_1312059_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312095_1313610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313613_1314573_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314601_1315405_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315406_1317041_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317124_1318186_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318384_1318654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318657_1319182_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319597_1320548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320544_1321579_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321687_1322326_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322620_1322848_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322970_1323684_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323928_1324879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325018_1325264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325378_1326827_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326937_1327888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1418121	1470274	4109522	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1418121_1419072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419238_1419592_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419604_1419967_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420008_1420434_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420636_1421893_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422091_1423072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423221_1424463_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424561_1425512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425520_1426216_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429037_1429637_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429647_1431813_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431836_1433621_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433620_1433710_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434404_1434677_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434676_1436743_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436739_1437690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437788_1438739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438854_1439187_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439183_1439870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439856_1440816_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440848_1443218_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443217_1443850_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443951_1445292_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445338_1446694_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446984_1447221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447408_1447726_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447998_1448514_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448784_1449540_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449878_1450085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450092_1450752_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451046_1453251_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453361_1454585_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454707_1455682_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455749_1456943_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456957_1457758_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457754_1459611_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459607_1460213_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460231_1461617_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462342_1463569_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463657_1464440_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464538_1465489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465515_1466289_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466300_1467542_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469323_1470274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1514199	1574110	4109522	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1514199_1514688_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514805_1515384_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515489_1515858_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515956_1516907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516913_1518026_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518712_1519915_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520118_1522779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522791_1526196_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526863_1529089_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529135_1529462_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529512_1530121_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530219_1531170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1531268_1532219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532288_1533053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1533049_1533586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533752_1534604_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534663_1535290_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535286_1536237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536335_1537448_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537437_1538439_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538544_1540056_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540052_1541357_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541468_1542029_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542296_1542851_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543306_1543522_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543776_1546374_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546370_1547558_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1548215_1548830_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548918_1550040_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550057_1550963_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551855_1552806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552987_1553740_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553808_1554468_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554464_1555193_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555205_1557485_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557509_1557713_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557754_1558387_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558522_1559440_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559436_1560150_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560387_1561158_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561162_1561762_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562006_1563497_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563555_1563840_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1564405_1565332_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565468_1566209_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566375_1567752_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567933_1568839_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570490_1572293_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1572410_1573061_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573159_1574110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1619282	1674873	4109522	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619282_1620233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620291_1621065_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621057_1622614_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622610_1623561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624887_1625490_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625729_1626431_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626424_1627207_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627391_1628342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628440_1629178_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629367_1630126_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630172_1631162_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631339_1632308_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633847_1634816_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634824_1635766_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636239_1637250_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637240_1638755_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638751_1640098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1640100_1641135_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641184_1642810_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643362_1644313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644417_1645365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645418_1647233_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647225_1647900_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648029_1651104_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651117_1651417_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651731_1652355_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1652598_1653468_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653445_1654390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654475_1655402_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655514_1656294_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656284_1657481_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657511_1658462_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658683_1659373_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659437_1660193_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660244_1661237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661246_1662200_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662315_1663278_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664679_1665108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665104_1666055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1666348_1667071_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667509_1668697_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1668700_1669051_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670800_1671772_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671785_1672499_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672503_1673421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673527_1673824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673922_1674873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1779407	1836725	4109522	transposase,tRNA	Tupanvirus(16.67%)	56	NA	NA
WP_010930630.1|1779407_1780868_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1780887_1781532_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1781568_1782534_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1782632_1783583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|1783643_1784678_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1784777_1786043_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1786436_1787453_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930634.1|1787796_1788297_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003810016.1|1788338_1788653_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010930635.1|1788662_1789604_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810020.1|1789600_1790125_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003820128.1|1790127_1791396_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_004568037.1|1791424_1792408_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930636.1|1792404_1793214_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003820133.1|1793210_1794014_+	aspartate dehydrogenase	NA	NA	NA	NA	NA
WP_010930638.1|1794028_1794796_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820136.1|1794883_1795522_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930639.1|1795526_1796480_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930640.1|1796591_1797716_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810039.1|1799353_1800181_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930641.1|1800177_1800981_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930642.1|1800977_1802069_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
WP_010930643.1|1802475_1803504_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_019247348.1|1803662_1804367_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930644.1|1804375_1806496_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930645.1|1806496_1807453_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820147.1|1807521_1807914_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930646.1|1807917_1808394_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003820150.1|1808407_1808743_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930647.1|1808749_1809199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820151.1|1809406_1809706_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930648.1|1809758_1810871_+	alkene reductase	NA	NA	NA	NA	NA
WP_015041299.1|1810875_1811514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820153.1|1811494_1812754_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_010930650.1|1812757_1814863_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_010930651.1|1814868_1816854_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_010930652.1|1817062_1817299_+	membrane protein	NA	NA	NA	NA	NA
WP_003820159.1|1817643_1818129_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1818496_1819447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1821004_1821655_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1821783_1822986_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1823063_1825100_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1825352_1825844_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1826059_1826572_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1826589_1827801_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1827838_1828249_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1828250_1828574_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1828576_1829089_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1829218_1831081_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1831090_1831432_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1831431_1831626_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1831750_1832644_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1832640_1833591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833715_1834525_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012067.1|1834725_1835676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1835774_1836725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1864508	1905199	4109522	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_010930590.1|1864508_1867133_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1867119_1867374_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1867440_1868022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1868325_1868586_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1868751_1869375_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1869374_1870148_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1870144_1871353_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1871378_1871852_-	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1871925_1872876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1872974_1873925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1874023_1875373_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1876138_1876894_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1876986_1879869_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1880191_1880617_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1880644_1881793_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1881789_1882296_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1882311_1883598_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1883647_1884943_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1884944_1885583_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1885588_1886746_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1886772_1888128_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1888131_1889202_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1889340_1889577_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1889664_1890771_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1890736_1892041_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1892059_1892959_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1893142_1894300_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1894376_1895672_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1895785_1896325_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1896602_1896815_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1896834_1898865_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1898890_1899085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1899550_1901833_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1902242_1902542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1902826_1903240_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1903199_1904150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1904248_1905199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	1916403	1965799	4109522	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1916403_1917354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1917350_1918625_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1918728_1919922_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1919918_1920572_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1920568_1922005_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1921992_1922352_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1923166_1923307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1923324_1924275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1925320_1927186_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1927443_1928964_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1929051_1929702_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1930650_1931946_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1931967_1932852_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1932950_1933826_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1933815_1934172_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1934302_1935277_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1935406_1935586_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1935683_1936208_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1936218_1937055_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1937167_1937539_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1937535_1938087_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1938102_1939794_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1939842_1940523_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1940770_1941235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1941404_1942334_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1942346_1942994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1943067_1944885_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1944968_1945919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1946571_1947522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1947540_1947888_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1947916_1949356_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1949374_1949770_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1949944_1950553_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1950565_1951384_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1951335_1952310_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1952338_1953400_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1953396_1955613_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1955626_1956085_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1956242_1956587_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1956743_1957649_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1957735_1958749_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1960728_1961745_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1961887_1963240_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1963414_1963711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1964848_1965799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	2172144	2221797	4109522	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2172144_2173095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173193_2175188_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175247_2176213_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176202_2179064_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179066_2179573_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179677_2180886_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180887_2181826_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181987_2182461_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182457_2183408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2183518_2183959_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2184087_2185317_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2185355_2186177_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2186230_2187382_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2187473_2187962_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2190512_2193062_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2193132_2195706_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195971_2196172_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2196203_2196365_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2196422_2196761_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196909_2197860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2198634_2199303_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2199284_2201240_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2201482_2202232_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2202244_2203108_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2203111_2204527_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2204660_2205389_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2205527_2205728_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205903_2206302_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2206325_2207726_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2207844_2208597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2208885_2209563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2209589_2210369_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2210365_2211250_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2211267_2212047_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2212031_2212790_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2212927_2213563_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2213830_2214847_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214944_2215985_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2216119_2217412_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2218771_2219155_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2219172_2219760_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2219797_2220748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2220846_2221797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	2478104	2536348	4109522	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2478104_2479055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2479534_2480191_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2480205_2481873_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2481875_2482505_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2482716_2483811_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2483955_2484768_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2484771_2486355_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2486525_2487656_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2487842_2488919_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2489000_2489651_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2489665_2491069_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2491352_2492171_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2492167_2492872_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2493771_2494887_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2494920_2495295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2495317_2496475_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2496487_2496721_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2497355_2500325_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2500339_2500549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2500700_2501330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2501326_2503384_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2503440_2504121_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2504117_2504678_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2504684_2505782_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2505934_2506528_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2506524_2507817_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2507830_2508373_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2508382_2509219_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2509252_2510314_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2510355_2511408_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2511423_2511726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2511867_2512818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2512996_2514691_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514687_2515773_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2515820_2516720_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516730_2517375_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518396_2521639_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521649_2522804_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523030_2523993_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524091_2525042_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525140_2526091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2526100_2526790_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2526849_2527287_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2527332_2528226_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2528273_2529446_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2529442_2530597_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2530793_2531144_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2531133_2531568_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2531584_2532535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2532682_2533150_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2533130_2534288_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2534353_2535280_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2535397_2536348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	2578626	2645126	4109522	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578626_2579577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579946_2580519_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580521_2581532_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581524_2582025_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582035_2582377_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2582445_2583180_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583196_2583466_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583488_2584277_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010930525.1|2584323_2585340_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585556_2586999_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587177_2588797_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2588917_2590738_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2590816_2592349_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2592382_2594029_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594098_2595121_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595138_2596272_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596274_2596964_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596963_2597749_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597792_2598557_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598595_2600017_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600082_2600787_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2600834_2601254_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601266_2601674_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2601857_2602568_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602694_2602985_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603002_2603485_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2607990_2609145_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609450_2610467_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610713_2611502_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611568_2612249_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612245_2613016_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2613114_2614065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614120_2615038_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615048_2616227_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616246_2617242_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2618830_2619439_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619426_2620467_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620484_2621447_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621443_2622637_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622633_2623431_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623456_2624443_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624461_2626501_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2626702_2627383_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627396_2628308_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628304_2628883_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629021_2629927_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629934_2633354_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633341_2635942_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636897_2637530_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637923_2638682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2638678_2639881_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640068_2641019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641926_2643072_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643058_2643814_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643930_2644110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644175_2645126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	2673241	2710652	4109522	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2673241_2674192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2674290_2675241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2675333_2675873_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2675979_2676324_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2676381_2677830_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2678017_2678353_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2679980_2681159_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2681241_2681742_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2681851_2682553_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2682564_2683029_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2683043_2683319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2683315_2684092_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2684120_2684948_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2685073_2685544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2685670_2686564_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2686611_2687793_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2687805_2688621_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2688754_2689282_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2689278_2689776_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2689923_2690301_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2690522_2691473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2691570_2692182_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2692416_2693544_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2693654_2694743_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2694795_2695647_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2695666_2696548_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2696724_2698038_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2698248_2699082_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2699078_2699660_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2700013_2700964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2700979_2702095_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2702197_2703124_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2703123_2704362_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2704358_2705126_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2705126_2705828_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2705909_2706356_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2707245_2707884_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2708652_2709603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2709701_2710652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	2809779	2864296	4109522	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2809779_2810730_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811058_2811664_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811717_2813031_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813105_2813576_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813575_2814364_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814374_2816027_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816114_2817065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818226_2818733_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818729_2819494_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819509_2819794_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819858_2820848_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821019_2821949_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821920_2822607_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822640_2823186_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823230_2824496_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824492_2825395_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826576_2827521_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827615_2829133_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829174_2830803_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830910_2831792_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834904_2835279_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835303_2835642_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835685_2837320_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837358_2838705_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838812_2840234_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840303_2840888_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2840990_2841941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842075_2843182_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843192_2844290_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844434_2845640_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845646_2846168_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846164_2846647_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846652_2846904_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846884_2847370_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847505_2850967_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2850984_2851869_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851878_2852310_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852556_2853060_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853137_2854538_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854612_2855488_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855484_2856492_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856959_2857265_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857355_2857946_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858136_2859153_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859344_2861681_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861763_2862198_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862296_2863247_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863345_2864296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	2872321	2930153	4109522	protease,transposase	uncultured_Mediterranean_phage(28.57%)	42	NA	NA
WP_005012067.1|2872321_2873272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874978_2875245_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875952_2876291_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_077069211.1|2877619_2880604_-	autotransporter BapC	NA	NA	NA	NA	NA
WP_010931107.1|2880842_2881445_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881541_2882831_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882888_2883620_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883616_2884420_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884416_2885505_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885501_2886431_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886579_2887725_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887746_2888697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2889027_2892849_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893005_2893674_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893678_2895352_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895370_2896690_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896694_2899010_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899065_2901234_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901230_2906411_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906509_2906824_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907051_2907297_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907391_2907910_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908009_2909215_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909330_2910728_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910844_2911423_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911495_2912887_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913054_2914005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2914102_2915053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915333_2915954_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915950_2916364_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916360_2917404_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917459_2917648_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917657_2918422_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918512_2919169_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919260_2920019_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920044_2921646_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921846_2922851_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922951_2923215_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923332_2924109_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924699_2925650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928033_2929146_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929202_2930153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	2960539	3004230	4109522	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2960539_2961490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2961610_2962507_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964784_2967010_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967174_2968263_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968219_2968873_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968920_2969718_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970249_2971200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2971280_2972429_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972485_2973436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973534_2973840_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973868_2974303_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974304_2975549_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975545_2976256_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976270_2977182_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977544_2977949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977945_2978404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2978410_2979319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2979315_2980182_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980168_2980996_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981006_2982134_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983211_2984450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984491_2985754_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985760_2986513_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986564_2986750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987025_2987490_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987521_2988181_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988325_2990434_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990430_2991381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991484_2992105_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2992208_2992949_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994083_2995208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995253_2995622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995863_2996814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997849_2998392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998589_2998760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998777_2999728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2999724_3000633_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000759_3001596_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002108_3003218_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003279_3004230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	3384173	3437914	4109522	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3384173_3385124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385528_3386173_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386197_3386782_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386882_3387500_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387502_3389218_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389214_3389523_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389539_3390157_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390201_3390504_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390604_3391459_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391646_3391871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392040_3392313_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392730_3393138_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393507_3394302_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394402_3395638_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395706_3396723_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396734_3398111_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398107_3399304_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399300_3400839_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400835_3402095_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404035_3404986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405752_3406847_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406839_3408174_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408127_3408811_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3408836_3410000_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3409996_3410998_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3410997_3411870_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411866_3412616_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412612_3413404_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413400_3414540_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414815_3415601_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415634_3416417_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416420_3416810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417949_3418813_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418848_3419937_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419933_3420884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421237_3424216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425142_3426021_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427969_3428920_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428916_3429384_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429426_3430197_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430217_3431018_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431028_3432438_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432532_3433318_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433557_3434574_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434681_3435074_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435211_3435892_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435896_3436868_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436963_3437914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	3444069	3503367	4109522	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3444069_3445833_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445944_3446823_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446935_3447751_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447754_3448006_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448090_3449107_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449437_3449659_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452019_3452937_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453434_3454643_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454722_3456294_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456411_3457347_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457535_3458480_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459047_3464765_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464770_3465898_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465953_3466580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466851_3467868_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467963_3468674_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468670_3469660_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469755_3471387_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471389_3472127_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472282_3473155_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473504_3474644_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474640_3475300_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475371_3476004_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476033_3476552_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476562_3477672_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477718_3478573_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478574_3479477_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480699_3481650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483404_3484394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484569_3485358_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485354_3486386_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486404_3486968_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487023_3488544_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488807_3489512_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489519_3490248_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490362_3490737_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490779_3492069_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492065_3493235_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493231_3494071_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494130_3495066_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495078_3496029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496127_3497090_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497121_3497481_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497605_3498508_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498509_3500282_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500316_3501093_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502416_3503367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	3518305	3576378	4109522	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518305_3519256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519384_3520518_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520561_3521467_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521469_3523170_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523166_3524087_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524094_3525072_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525130_3526165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528139_3528376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3528502_3529366_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529454_3530276_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530355_3531093_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531089_3532082_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532234_3532858_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532902_3534051_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536374_3537325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537665_3538616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538714_3539665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539961_3540459_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540501_3542277_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542284_3543151_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543157_3543892_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545061_3545856_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546145_3546736_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546769_3548098_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548172_3549318_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549429_3550428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550390_3550825_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552341_3553226_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553222_3554428_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554424_3555285_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555397_3557188_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557228_3557873_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557894_3558203_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558368_3559655_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561088_3562039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3563990_3565205_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565310_3566300_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566296_3566905_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566917_3567547_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567543_3568164_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568195_3568987_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569838_3570294_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570312_3571239_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571292_3572579_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573509_3574382_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574378_3575329_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575427_3576378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013890	Bordetella pertussis strain J120 chromosome, complete genome	4109522	4008590	4073502	4109522	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4008590_4009076_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009164_4009302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009294_4010275_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4010541_4011351_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011390_4012071_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012064_4012523_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4012534_4012897_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4012979_4013663_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4013718_4014027_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014045_4014360_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014356_4016831_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4016838_4018230_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018226_4018412_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018390_4019092_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019088_4019910_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019890_4021015_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021007_4022027_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4022232_4023123_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023367_4024159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024241_4024616_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4024593_4026003_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4025995_4027378_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4027712_4029317_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4029394_4030366_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030376_4031303_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4031693_4032644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032813_4034040_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034239_4035106_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035098_4036061_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036161_4037112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037210_4038161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038259_4039210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039206_4040700_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040696_4043804_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043800_4046869_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046865_4048116_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4048296_4049049_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4049090_4049735_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4049743_4050724_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050823_4051567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4051649_4051997_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052094_4052937_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4052981_4053869_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053895_4054084_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054181_4055639_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055625_4057152_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057170_4057638_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4057637_4058660_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058780_4059521_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4059575_4060676_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060677_4061868_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4061987_4063004_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063322_4063994_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4063990_4064899_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065110_4065758_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4069618_4070686_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070696_4071506_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4071595_4072369_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4072551_4073502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
