The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	27282	78584	4107419	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60473_60887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69084_70035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	107426	175252	4107419	tRNA,transposase	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_033446324.1|127020_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132699_132984_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136525_138034_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138780_142743_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142795_143578_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143665_144889_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144872_145805_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145810_146623_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147936_148908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149026_149809_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150575_151556_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151552_152281_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152305_152737_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152838_153714_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153765_154965_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155069_155531_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155636_157034_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157030_157708_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157763_159074_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159085_159784_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159947_160724_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160889_161912_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162140_162776_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|162781_164335_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	178634	236271	4107419	tRNA,protease,transposase	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225622_226318_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226334_227747_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227859_229290_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229331_231245_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231563_232130_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232220_233222_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	250685	303021	4107419	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_033446171.1|253617_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287022_287649_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287671_288598_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288606_290193_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290189_291194_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291393_292254_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292285_293287_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293357_294167_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294244_296104_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296232_297435_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297548_298430_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299932_300493_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300552_301503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301694_301982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302070_303021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	390857	448366	4107419	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_023853020.1|416466_417468_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_042962164.1|417402_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	589370	650561	4107419	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590796_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611449_612421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618893_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622979_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_033446151.1|625272_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638047_639400_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640019_640769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646243_647116_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	655885	702076	4107419	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655885_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678492_678699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679936_680188_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680180_680870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682716_683202_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683188_684466_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690795_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	708242	762172	4107419	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712622_713939_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719265_720216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722353_723583_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723585_725028_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725132_726278_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726309_727107_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727131_728691_-	chaperone SurA	NA	NA	NA	NA	NA
WP_033446130.1|728687_731054_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_023852735.1|731232_732273_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732272_732965_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733108_733810_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733794_734172_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734903_735854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736013_736886_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737226_737445_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737484_738864_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738905_740303_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740342_741995_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741998_742883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742882_743824_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743902_745522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745688_746504_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746571_747141_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747141_748092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748746_749844_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749877_751143_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751300_752251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752494_753085_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753100_755545_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755664_756636_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756767_757292_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757251_758202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758423_760619_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760691_761120_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761221_762172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	853050	913926	4107419	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|853050_854001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446246.1|853973_854573_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854574_855009_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855005_855440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855423_856227_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856243_857059_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857055_857871_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858017_858719_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858746_860705_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860787_861738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861958_862627_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862750_863857_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863869_866983_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866979_868473_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868487_869159_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930028.1|869202_869655_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869837_870485_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870588_872637_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872633_874646_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874671_876006_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876114_877107_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877173_879258_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879282_880254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880382_881414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881417_882569_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930020.1|882772_883663_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883740_884565_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884761_885778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885974_886958_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888556_889945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889975_890965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893412_895644_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901363_902314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906807_907014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	934673	998266	4107419	transposase	Bacillus_virus(15.38%)	58	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953782_954757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954881_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956069_956462_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956591_957542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957571_957754_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958526_959708_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959923_960601_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960597_961323_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961448_962030_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962400_965082_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965084_966215_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966207_967293_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967379_968279_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968275_969604_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969618_970290_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970477_972193_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972194_972554_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972745_973060_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973102_974323_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974319_975261_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975257_976247_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976281_976866_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976964_977915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977995_978907_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978967_980113_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980132_981047_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981118_981868_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981867_982797_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983040_984867_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984949_985591_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985780_986815_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988651_989716_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990513_991422_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992909_994184_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994337_994718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994725_995598_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995903_996284_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996494_997220_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1024378	1082463	4107419	tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1024378_1025329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030767_1031541_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033688_1036037_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036191_1036833_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038162_1038315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038346_1038895_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039576_1040515_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040880_1041825_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044541_1045402_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047529_1048267_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048702_1049026_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049060_1049621_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049741_1050617_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050629_1051577_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051678_1051972_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051998_1054056_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054070_1054571_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054644_1056351_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057214_1058267_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058319_1058709_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058717_1059350_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059449_1060466_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061296_1062304_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062300_1063944_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063940_1064828_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064968_1065442_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065431_1066454_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068815_1069832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070164_1071100_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071149_1073030_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073096_1073441_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073585_1074722_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074718_1075792_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075949_1077386_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077476_1078118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078453_1079470_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081512_1082463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1086509	1159574	4107419	tRNA,holin,transposase	Planktothrix_phage(18.18%)	57	NA	NA
WP_003819794.1|1086509_1086923_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086924_1087284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087326_1088871_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088954_1089785_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089819_1090974_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091016_1091889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092005_1094294_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095500_1095965_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095991_1096942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096959_1097097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097309_1098086_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098130_1098988_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099009_1100026_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100160_1101201_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101395_1103477_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103712_1105206_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105436_1106231_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106451_1107810_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107806_1108649_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108667_1110554_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110495_1110747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110791_1111424_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111442_1112045_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113240_1114191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114771_1115479_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115837_1116824_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116963_1117977_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117973_1118924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119036_1119495_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119531_1120845_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120862_1121234_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121230_1122694_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122834_1123563_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123544_1126394_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126606_1127557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127724_1128549_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128548_1129427_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130331_1131447_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131475_1132270_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132266_1134132_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134210_1134843_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134839_1135142_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135184_1136705_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1136711_1137467_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1137496_1138601_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1138703_1140404_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_023853218.1|1140385_1141327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141372_1142653_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1142645_1143341_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143374_1144202_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1144483_1147714_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1148449_1152376_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1154275_1156072_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156071_1157040_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157109_1157955_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158022_1158577_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158623_1159574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1177361	1237247	4107419	tRNA,transposase	Bacillus_phage(25.0%)	44	NA	NA
WP_005012067.1|1177361_1178312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178441_1179425_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179479_1180202_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181680_1183036_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183116_1185492_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185656_1187732_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1187793_1188588_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188695_1189658_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189645_1190401_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190508_1192146_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192213_1192951_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193053_1193629_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193801_1194338_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194370_1194685_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194700_1195546_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195584_1196964_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197041_1197923_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198021_1198972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198968_1199379_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199486_1200341_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200333_1201296_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201341_1202466_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202571_1203450_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203574_1204354_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204507_1205929_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206363_1208061_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208287_1209229_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209555_1210302_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210309_1211236_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211357_1212275_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212314_1213268_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213292_1213871_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215544_1216153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216230_1216584_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216667_1217657_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1217859_1218810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218896_1219847_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1219843_1220794_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1221054_1222083_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1222162_1223461_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_023853219.1|1223457_1223994_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1224351_1228398_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1228638_1236300_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1236296_1237247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1293757	1339487	4107419	tRNA,transposase	Salmonella_phage(33.33%)	44	NA	NA
WP_005013747.1|1293757_1294708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1295329_1297057_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1297168_1298527_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1298819_1299770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1299810_1300881_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300903_1301782_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301953_1302925_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1303087_1303930_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1304091_1304772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1304765_1305935_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1305931_1306963_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1307030_1308248_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1308282_1309815_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309895_1310519_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1310549_1311161_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1311196_1311667_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1312098_1313103_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1313139_1314654_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1314657_1315617_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1315645_1316449_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1316450_1318085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1318168_1319230_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1319428_1319698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1319701_1320226_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010931011.1|1321587_1322622_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1322730_1323369_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1323663_1323891_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1324013_1324727_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324971_1325922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1326061_1326307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1326421_1327870_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1327980_1328931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1328927_1329377_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1329571_1330522_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1330857_1331055_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1331070_1331430_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1331504_1332527_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1332539_1334957_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1334974_1335304_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1335362_1335773_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1336272_1337364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1337547_1338144_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1338243_1338426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1338536_1339487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1419164	1471317	4107419	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1419164_1420115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1420281_1420635_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1420647_1421010_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1421051_1421477_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1421679_1422936_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1423134_1424115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1424264_1425506_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1425604_1426555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1426563_1427259_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1430080_1430680_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1430690_1432856_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432879_1434664_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1434663_1434753_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1435447_1435720_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1435719_1437786_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1437782_1438733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1438831_1439782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439897_1440230_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1440226_1440913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440899_1441859_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441891_1444261_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1444260_1444893_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444994_1446335_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1446381_1447737_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1448027_1448264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1448451_1448769_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1449041_1449557_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1449650_1449812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1449827_1450583_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450921_1451128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1451135_1451795_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1452089_1454294_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1454404_1455628_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1455750_1456725_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1456792_1457986_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1458000_1458801_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1458797_1460654_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1460650_1461256_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1461274_1462660_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1463385_1464612_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1464700_1465483_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1465581_1466532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1466558_1467332_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1467343_1468585_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1470366_1471317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1515242	1583328	4107419	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1515242_1515731_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1515848_1516427_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1516532_1516901_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1516999_1517950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517956_1519069_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1519755_1520958_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1520993_1521140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1521161_1523822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1523834_1527239_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527906_1530132_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1530178_1530505_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1530555_1531164_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1531262_1532213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532282_1533047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1533043_1533580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533746_1534598_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534657_1535284_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535280_1536231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536329_1537442_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537431_1538433_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538538_1540050_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540046_1541351_-	imelysin	NA	NA	NA	NA	NA
WP_033446227.1|1541462_1542020_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930432.1|1542290_1542845_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543300_1543516_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543770_1546368_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546364_1547552_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1548210_1548825_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548913_1550035_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550052_1550958_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551850_1552801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552982_1553735_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553803_1554463_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554459_1555188_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555200_1557480_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557504_1557708_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557749_1558382_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558517_1559435_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559431_1560145_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560382_1561153_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561157_1561757_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562001_1563492_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563550_1563835_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1563972_1564128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1564400_1565327_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565463_1566204_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566370_1567747_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567928_1568834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570485_1572288_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1572414_1573056_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573154_1574105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574126_1575347_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575532_1576945_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1577008_1578076_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1578075_1579563_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579572_1580517_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580676_1581375_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581452_1582358_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582377_1583328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1619277	1674868	4107419	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619277_1620228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620286_1621060_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621052_1622609_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622605_1623556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624882_1625485_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625724_1626426_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626419_1627202_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627386_1628337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628435_1629173_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629362_1630121_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630167_1631157_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631334_1632303_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633842_1634811_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634819_1635761_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636234_1637245_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637235_1638750_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638746_1640093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1640095_1641130_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641179_1642805_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643357_1644308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644412_1645360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645413_1647228_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647220_1647895_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648024_1651099_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651112_1651412_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651726_1652350_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1652593_1653463_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653440_1654385_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654470_1655397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655509_1656289_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656279_1657476_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657506_1658457_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658678_1659368_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659432_1660188_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660239_1661232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661241_1662195_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662310_1663273_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664674_1665103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665099_1666050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1666343_1667066_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667504_1668692_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1668695_1669046_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670795_1671767_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671780_1672494_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672498_1673416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673522_1673819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673917_1674868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1832633	1891903	4107419	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1832633_1833584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833708_1834518_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1834718_1835669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836942_1838160_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839216_1840119_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840195_1841068_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841198_1841567_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841624_1842671_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842866_1844123_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844127_1845465_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845614_1846571_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846673_1847606_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847721_1848042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446181.1|1848028_1848394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848441_1850016_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1850068_1851013_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1851030_1851861_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1851853_1853488_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853484_1854840_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1855746_1857324_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857327_1858602_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858699_1859074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860789_1861923_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861960_1862566_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862562_1863381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863452_1866077_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1866063_1866318_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866384_1866966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867269_1867530_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867695_1868319_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868318_1869092_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1869088_1870297_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870322_1870796_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870869_1871820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871918_1872869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872967_1874317_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1875082_1875838_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875930_1878813_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879135_1879561_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879588_1880737_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880733_1881240_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1881255_1882542_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1882591_1883887_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883888_1884527_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1884532_1885690_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885716_1887072_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1887075_1888146_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888284_1888521_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888608_1889715_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889680_1890985_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1891003_1891903_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1902143	1946466	4107419	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1902143_1903094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903192_1904143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1904342_1905428_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1905443_1906205_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1906201_1907125_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_010930780.1|1907223_1907724_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1907756_1908500_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1908595_1908835_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1908848_1909001_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1909086_1910577_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1910668_1911607_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1911603_1911780_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1911782_1912445_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1914066_1914210_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1914206_1915181_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1915347_1916298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916294_1917569_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1917672_1918866_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918862_1919516_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919512_1920949_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920936_1921296_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1922110_1922251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1922268_1923219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1924264_1926130_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1926387_1927908_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1927995_1928646_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1929594_1930890_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930911_1931796_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931894_1932770_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1932759_1933116_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1933246_1934221_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1934350_1934530_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1934627_1935152_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1935162_1935999_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1936111_1936483_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1936479_1937031_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1937046_1938738_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1938786_1939467_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1939714_1940179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1940348_1941278_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1941290_1941938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1942011_1943829_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943912_1944863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1945515_1946466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	1976239	2040608	4107419	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1976239_1977190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1977411_1978362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1978460_1979426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1979563_1980463_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1983057_1984545_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1984555_1985752_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1985824_1987144_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1987140_1988016_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1988046_1989195_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1989212_1989527_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1989548_1990271_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1990270_1991089_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1991093_1991621_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1991626_1992883_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1993241_1994381_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1994458_1995331_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1996201_1997152_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1997111_1997747_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1998106_1999429_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1999747_2000569_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2001993_2002566_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2002605_2004435_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2004397_2005456_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2005493_2005955_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2006039_2006786_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2008276_2011507_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2011573_2012905_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2013157_2013532_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2013634_2014813_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2014823_2015414_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2015524_2016331_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2016356_2017151_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2018151_2019126_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2019284_2019797_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2019953_2020925_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853104.1|2022669_2023464_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2023472_2024774_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2024724_2025489_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2025602_2026373_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2026457_2027645_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2027717_2028092_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2028192_2029455_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2029451_2030309_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2030481_2031483_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2031934_2032885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2034448_2035600_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2035968_2036205_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2036268_2036436_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2036549_2038445_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2038608_2039559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2039657_2040608_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	2172137	2229416	4107419	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2172137_2173088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173186_2175181_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175240_2176206_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176195_2179057_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179059_2179566_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179670_2180879_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180880_2181819_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181980_2182454_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182450_2183401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2183511_2183952_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2184080_2185310_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2185348_2186170_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2186223_2187375_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852690.1|2187466_2187937_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2190505_2193055_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2193125_2195699_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195964_2196165_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2196196_2196358_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2196415_2196754_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196902_2197853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2198627_2199296_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2199277_2201233_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2201475_2202225_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2202237_2203101_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2203104_2204520_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2204653_2205382_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2205520_2205721_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205896_2206295_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2206318_2207719_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2207837_2208590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2208878_2209556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2209582_2210362_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2210358_2211243_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2211260_2212040_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2212024_2212783_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2212920_2213556_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930525.1|2213823_2214840_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214937_2215978_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2216112_2217405_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2218764_2219148_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2219165_2219753_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2219790_2220741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2220839_2221400_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2221396_2221942_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2222137_2223166_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2223206_2224547_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2224655_2225660_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2225766_2228367_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2228465_2229416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	2576520	2643020	4107419	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576520_2577471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577840_2578413_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578415_2579426_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579418_2579919_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579929_2580271_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580339_2581074_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581090_2581360_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581382_2582171_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582217_2583234_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583450_2584893_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585071_2586691_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586811_2588632_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588710_2590243_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590276_2591923_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2591992_2593015_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593032_2594166_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594168_2594858_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594857_2595643_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595686_2596451_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596489_2597911_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597976_2598681_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598728_2599148_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599160_2599568_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599751_2600462_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600588_2600879_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600896_2601379_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605884_2607039_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607344_2608361_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608607_2609396_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609462_2610143_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610139_2610910_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611008_2611959_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612014_2612932_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612942_2614121_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614140_2615136_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616724_2617333_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617320_2618361_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618378_2619341_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619337_2620531_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620527_2621325_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621350_2622337_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622355_2624395_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624596_2625277_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625290_2626202_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626198_2626777_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626915_2627821_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627828_2631248_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631235_2633836_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634791_2635424_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635817_2636576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636572_2637775_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637962_2638913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639820_2640966_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640952_2641708_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641824_2642004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642069_2643020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	2671135	2708547	4107419	transposase	Planktothrix_phage(33.33%)	37	NA	NA
WP_005012067.1|2671135_2672086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672184_2673135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673227_2673767_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2673873_2674218_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674275_2675724_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2675911_2676247_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2677874_2679053_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679135_2679636_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2679745_2680447_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2680458_2680923_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930294.1|2682014_2682842_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2682967_2683438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2683564_2684458_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684505_2685687_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2685699_2686515_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2686648_2687176_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687172_2687670_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2687817_2688195_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2688416_2689367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2689465_2690077_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690311_2691439_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2691549_2692638_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2692690_2693542_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2693561_2694443_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2694619_2695933_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696143_2696977_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2696973_2697555_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2697908_2698859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2698874_2699990_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700092_2701019_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701018_2702257_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702253_2703021_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703021_2703723_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2703804_2704251_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2705140_2705779_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2706547_2707498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2707596_2708547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	2807674	2862191	4107419	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_076879566.1|2807674_2808625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808953_2809559_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809612_2810926_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811000_2811471_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811470_2812259_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812269_2813922_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814009_2814960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816121_2816628_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816624_2817389_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817404_2817689_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817753_2818743_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818914_2819844_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819815_2820502_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820535_2821081_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821125_2822391_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822387_2823290_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824471_2825416_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825510_2827028_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827069_2828698_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828805_2829687_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832799_2833174_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833198_2833537_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833580_2835215_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835253_2836600_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836707_2838129_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838198_2838783_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838885_2839836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839970_2841077_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841087_2842185_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842329_2843535_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843541_2844063_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844059_2844542_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844547_2844799_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844779_2845265_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845400_2848862_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848879_2849764_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849773_2850205_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850451_2850955_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851032_2852433_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852507_2853383_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853379_2854387_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854854_2855160_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855250_2855841_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856031_2857048_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857239_2859576_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859658_2860093_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860191_2861142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861240_2862191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	2870216	2927002	4107419	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2870216_2871167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872873_2873140_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873847_2874186_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878739_2879342_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879438_2880728_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880785_2881517_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881513_2882317_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882313_2883402_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883398_2884328_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884476_2885622_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885643_2886594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886924_2890746_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890902_2891571_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891575_2893249_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893267_2894587_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894591_2896907_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896962_2899131_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899127_2904308_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904406_2904721_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904948_2905194_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905288_2905807_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905906_2907112_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907227_2908625_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908741_2909320_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909392_2910784_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910951_2911902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912182_2912803_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912799_2913213_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913209_2914253_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914308_2914497_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914506_2915271_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915361_2916018_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916109_2916868_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916893_2918495_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918695_2919700_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919800_2920064_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_023853341.1|2920181_2920949_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921548_2922499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_151243721.1|2924882_2925980_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926051_2927002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	2957388	3001079	4107419	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2957388_2958339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2958459_2959356_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961633_2963859_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964023_2965112_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965068_2965722_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965769_2966567_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967098_2968049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968129_2969278_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969334_2970285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970383_2970689_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970717_2971152_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971153_2972398_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972394_2973105_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973119_2974031_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974393_2974798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974794_2975253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975259_2976168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976164_2977031_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977017_2977845_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977855_2978983_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980060_2981299_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981340_2982603_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982609_2983362_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983413_2983599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983874_2984339_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_023996698.1|2984418_2985030_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985174_2987283_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987279_2988230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988333_2988954_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989057_2989798_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990932_2992057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992102_2992471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992712_2993663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994698_2995241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995438_2995609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995626_2996577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996573_2997482_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997608_2998445_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998957_3000067_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000128_3001079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	3091688	3153524	4107419	tRNA,protease,transposase	Clostridium_phage(14.29%)	60	NA	NA
WP_005012067.1|3091688_3092639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809257.1|3092737_3093541_-	anti-sigma factor	NA	NA	NA	NA	NA
WP_004568255.1|3093537_3094065_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003809253.1|3094115_3094484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809252.1|3094684_3095167_-	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
WP_003819714.1|3095297_3095750_+	membrane protein	NA	NA	NA	NA	NA
WP_003819713.1|3095757_3096171_-	VOC family protein	NA	NA	NA	NA	NA
WP_023853532.1|3096292_3096967_-	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV79	Clostridium_phage	30.0	2.7e-07
WP_047122804.1|3097244_3098411_+	chromate efflux transporter	NA	NA	NA	NA	NA
WP_010931201.1|3098413_3099883_-	peptidase	NA	NA	NA	NA	NA
WP_010931202.1|3099894_3102093_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_004568261.1|3102255_3102693_-	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
WP_010931203.1|3102994_3103291_+	DUF2282 domain-containing protein	NA	NA	NA	NA	NA
WP_023853526.1|3103302_3104172_+	DUF692 domain-containing protein	NA	NA	NA	NA	NA
WP_010931205.1|3104186_3104942_+	DUF2063 domain-containing protein	NA	NA	NA	NA	NA
WP_010931206.1|3104945_3105443_+	DoxX family protein	NA	NA	NA	NA	NA
WP_003809223.1|3107036_3107384_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003809222.1|3107504_3107852_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003809221.1|3107851_3108463_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931208.1|3108466_3110446_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004568266.1|3110449_3111364_-	ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003809217.1|3111572_3112127_-	response regulator	NA	NA	NA	NA	NA
WP_019248645.1|3112123_3113335_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_023998300.1|3113529_3114438_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931212.1|3114675_3115542_-	pirin family protein	NA	NA	NA	NA	NA
WP_010931213.1|3116300_3117107_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931214.1|3117160_3118519_+	MFS transporter	NA	NA	NA	NA	NA
WP_023999042.1|3118515_3119637_-	CoA transferase	NA	NA	NA	NA	NA
WP_003819684.1|3119763_3120675_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931216.1|3120698_3121688_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931217.1|3121712_3122180_-	acyl dehydratase	NA	NA	NA	NA	NA
WP_019247777.1|3122193_3122655_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005015810.1|3123662_3124613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3124758_3125883_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3126088_3126652_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3127646_3128129_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3128286_3129534_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3129754_3130411_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3130446_3131676_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010929591.1|3131943_3132894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3132985_3134401_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3134406_3135543_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3135612_3135984_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3136071_3136818_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3136854_3137919_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3138107_3138500_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3138509_3138938_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3139233_3140331_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3140672_3142037_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3142095_3142647_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3142660_3143335_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3144591_3145401_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3145403_3146240_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3146254_3146947_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3146958_3147348_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3147453_3148842_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3148958_3150455_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3150751_3151426_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3151524_3152475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3152573_3153524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	3382072	3435813	4107419	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382072_3383023_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383427_3384072_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384096_3384681_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384781_3385399_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385401_3387117_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387113_3387422_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387438_3388056_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388100_3388403_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388503_3389358_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389545_3389770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389939_3390212_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390629_3391037_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391406_3392201_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392301_3393537_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393605_3394622_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394633_3396010_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396006_3397203_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397199_3398738_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398734_3399994_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401934_3402885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403651_3404746_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404738_3406073_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406026_3406710_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406735_3407899_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407895_3408897_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408896_3409769_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409765_3410515_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410511_3411303_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411299_3412439_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412714_3413500_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413533_3414316_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414319_3414709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415848_3416712_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416747_3417836_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417832_3418783_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419136_3422115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423041_3423920_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425868_3426819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426815_3427283_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427325_3428096_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428116_3428917_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428927_3430337_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430431_3431217_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431456_3432473_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432580_3432973_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433110_3433791_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433795_3434767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434862_3435813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	3441968	3501266	4107419	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3441968_3443732_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443843_3444722_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444834_3445650_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445653_3445905_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3445989_3447006_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447336_3447558_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931364.1|3449918_3450785_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451333_3452542_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452621_3454193_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454310_3455246_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455434_3456379_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456946_3462664_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462669_3463797_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463852_3464479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3464750_3465767_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465862_3466573_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466569_3467559_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467654_3469286_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469288_3470026_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470181_3471054_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471403_3472543_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472539_3473199_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473270_3473903_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473932_3474451_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474461_3475571_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475617_3476472_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476473_3477376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478598_3479549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481303_3482293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482289_3482448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482468_3483257_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483253_3484285_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484303_3484867_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484922_3486443_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486706_3487411_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487418_3488147_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488261_3488636_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488678_3489968_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489964_3491134_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491130_3491970_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492029_3492965_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3492977_3493928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494026_3494989_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495020_3495380_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495504_3496407_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496408_3498181_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498215_3498992_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500315_3501266_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	3516204	3574276	4107419	tRNA,transposase	Planktothrix_phage(12.5%)	46	NA	NA
WP_005012808.1|3516204_3517155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517283_3518417_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518460_3519366_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519368_3521069_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521065_3521986_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3521993_3522971_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815317.1|3526037_3526274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526400_3527264_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527352_3528174_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528253_3528991_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3528987_3529980_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530132_3530756_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530800_3531949_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3534272_3535223_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535563_3536514_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536612_3537563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537859_3538357_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538399_3540175_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540182_3541049_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931405.1|3541055_3541781_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023852623.1|3542959_3543730_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544043_3544634_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544667_3545996_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546070_3547216_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547327_3548326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548288_3548723_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550239_3551124_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551120_3552326_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552322_3553183_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553295_3555086_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_023852857.1|3555126_3555777_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
WP_010929971.1|3555792_3556101_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556266_3557553_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3558986_3559937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561888_3563103_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563208_3564198_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564194_3564803_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564815_3565445_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565441_3566062_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566093_3566885_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567736_3568192_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568210_3569137_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569190_3570477_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571407_3572280_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572276_3573227_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573325_3574276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP013887	Bordetella pertussis strain J103 chromosome, complete genome	4107419	4006487	4071399	4107419	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4006487_4006973_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007061_4007199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007191_4008172_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008438_4009248_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009287_4009968_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009961_4010420_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010431_4010794_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010876_4011560_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011615_4011924_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011942_4012257_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012253_4014728_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014735_4016127_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016123_4016309_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016287_4016989_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016985_4017807_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017787_4018912_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018904_4019924_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020129_4021020_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010931657.1|4021162_4022056_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022138_4022513_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022490_4023900_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023892_4025275_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025609_4027214_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027291_4028263_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028273_4029200_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029590_4030541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030710_4031937_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032136_4033003_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032995_4033958_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034058_4035009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035107_4036058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036156_4037107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037103_4038597_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038593_4041701_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041697_4044766_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044762_4046013_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046193_4046946_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046987_4047632_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047640_4048480_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048720_4049464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049546_4049894_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049991_4050834_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050878_4051766_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051792_4051981_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052078_4053536_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053522_4055049_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055067_4055535_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055534_4056557_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056677_4057418_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057472_4058573_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058574_4059765_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059884_4060901_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061219_4061891_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061887_4062796_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063007_4063655_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067515_4068583_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068593_4069403_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069492_4070266_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4070448_4071399_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
