The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	21943	71084	4112678	transposase,tRNA	Synechococcus_phage(50.0%)	45	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995007.1|29362_29698_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29722_30157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30189_31407_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31412_31910_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32117_33053_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33262_34054_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34096_35518_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35673_36624_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36620_37811_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38060_38972_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38973_41112_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41108_41648_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41651_42380_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42366_43260_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43330_43726_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43735_44266_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44394_44694_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44711_45662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46248_46797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46768_47005_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47132_48026_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49195_50443_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50439_51054_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51189_52140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52182_53439_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54670_55405_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55410_56001_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56025_56715_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56711_57473_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57552_58452_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58545_59496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60296_61523_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|61522_61936_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62125_63067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63490_64465_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64521_65103_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65115_65418_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65536_66595_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66629_67901_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68530_69712_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70133_71084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	78682	137156	4112678	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|78682_79633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79707_80652_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80648_82523_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83870_84575_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84571_85678_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85939_86533_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86529_87717_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87779_89039_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89062_90151_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90158_91259_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91262_91838_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91841_92894_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93024_94032_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94033_95320_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95336_95492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95516_96320_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96316_97183_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97257_98388_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98387_99227_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100159_100762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100791_101445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101577_102834_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102914_103781_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103856_104132_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104139_104802_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104863_105865_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105879_106428_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106485_107382_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107378_108440_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108475_109426_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110325_111519_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111600_112230_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112291_112975_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112984_114667_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114954_115302_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115392_115710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115992_117009_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117084_117885_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117881_118757_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118767_120060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120102_121143_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121248_122070_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122170_123121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123219_124125_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124121_124955_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125791_126802_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126798_127188_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_033446324.1|128069_129335_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129425_131126_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131552_132200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132198_133638_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133748_134033_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134060_134939_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136205_137156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	165943	304069	4112678	transposase,tRNA,protease	Klosneuvirus(10.53%)	117	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929591.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_033446171.1|254666_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279416_279578_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279585_279726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280244_280694_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280703_281315_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281473_282322_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282347_283730_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283794_284436_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284575_285034_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285058_285835_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285888_287025_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287021_287972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|288070_288697_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|288719_289646_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|289654_291241_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|291237_292242_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|292441_293302_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|293333_294335_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|294405_295215_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|295292_297152_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|297280_298483_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|298596_299478_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|300980_301541_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|301600_302551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|302742_303030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|303118_304069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	391903	449412	4112678	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391903_392854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392990_393908_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393904_394153_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394149_395355_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395427_396423_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396445_397666_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397662_398307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400037_400847_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401151_402105_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402203_403187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403113_403815_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403863_404634_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404630_405809_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405976_407683_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407679_408576_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408616_410206_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410255_411248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411316_411916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412376_413357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413432_414383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414471_415386_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415382_416042_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416131_417055_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417060_417516_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_023853020.1|417512_418514_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_042962164.1|418448_418844_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418803_420423_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420419_421478_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421607_422102_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422194_423172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423367_424573_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424569_426081_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426096_427410_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427600_427780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428189_428924_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431368_432319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432450_432849_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433259_433730_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433818_434163_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434262_435663_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437451_437970_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438080_438836_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439031_440264_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440256_441042_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441108_442080_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442090_443068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443193_444366_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444392_445421_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445486_446680_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448461_449412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	591466	652657	4112678	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591466_592417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592892_593783_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593779_594601_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594800_595292_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595310_596384_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596430_597534_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597609_598230_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598250_598760_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598814_599066_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599129_600263_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600270_600657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600653_603173_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603601_603940_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603936_604443_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604504_605305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605415_606357_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606450_607986_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609665_611516_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611519_612353_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612352_613294_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613545_614517_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614658_616947_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617253_618162_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618216_619182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619256_620918_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620989_621700_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621666_621831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621848_622799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623497_623881_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623938_624541_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624558_624960_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625075_625987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625983_626565_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_033446151.1|627368_628094_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628134_629184_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629331_629910_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630296_631274_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631367_635762_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635962_636811_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636969_637782_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637837_638788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638886_639687_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639748_640132_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640143_641496_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641783_642113_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642115_642865_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643047_643968_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644014_644227_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644249_644672_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644688_645789_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645885_647403_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647478_648318_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648339_649212_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649302_650397_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650690_651641_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651715_652657_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	657981	704172	4112678	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657981_659007_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659047_659287_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659356_660946_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660945_661494_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661574_662147_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662165_663077_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663150_664119_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664241_665315_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665319_667140_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667216_668167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668255_668591_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668724_669375_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669396_670815_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670884_671640_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671608_672367_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672377_673259_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673275_673983_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673985_674744_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674953_676696_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676688_677213_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677252_678047_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678214_679288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679386_680337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680588_680795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680866_681478_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682032_682284_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682276_682966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682983_683205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683222_684173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684812_685298_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685284_686562_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686564_687983_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688011_689067_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689072_689315_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689437_690040_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690468_691419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692093_692345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692407_692890_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692891_693092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693091_693487_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693483_693882_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693878_694301_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694308_694809_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695063_695582_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695591_695921_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695938_696229_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696254_698867_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698876_699236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699303_699837_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699833_700223_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700215_704172_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	710338	764268	4112678	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710338_712069_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712121_712550_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712552_713233_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713232_713691_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713727_714702_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714718_716035_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716066_716564_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716650_717340_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717339_718389_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718385_719180_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719348_719699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719674_720232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721361_722312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724449_725679_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725681_727124_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727228_728374_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728405_729203_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729227_730787_-	chaperone SurA	NA	NA	NA	NA	NA
WP_033446130.1|730783_733150_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_023852735.1|733328_734369_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734368_735061_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735204_735906_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735890_736268_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736999_737950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738109_738982_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739322_739541_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739580_740960_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741001_742399_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742438_744091_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744094_744979_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744978_745920_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745998_747618_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747784_748600_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748667_749237_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749237_750188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750842_751940_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751973_753239_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753396_754347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754590_755181_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755196_757641_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757760_758732_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758863_759388_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759347_760298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760519_762715_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762787_763216_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763317_764268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	886856	1027430	4112678	transposase	Bacillus_phage(11.11%)	116	NA	NA
WP_023994644.1|886856_887873_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888069_889053_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890651_892040_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892070_893060_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893170_894403_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894684_895485_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895507_897739_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898526_898973_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898994_899741_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899884_900862_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901495_902107_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902100_903318_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903458_904409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904405_905125_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905245_907405_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907495_907765_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907853_908060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908058_908586_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908604_909384_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909551_910568_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910640_911132_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911142_912858_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914021_914972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914968_916801_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917199_917859_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917952_918099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918207_918375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918386_919067_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919348_920065_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920079_921381_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923525_926414_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926637_927990_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928018_928540_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928536_929991_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930025_930274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930379_931255_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931280_932336_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932348_933140_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933172_934543_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935719_936670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936722_936944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937103_937316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937435_938554_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938650_938866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939059_939311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939423_940374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940370_940754_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940808_942623_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942772_943600_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943645_944626_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944622_944835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944831_946013_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946176_946911_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946912_949525_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949660_951574_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952189_952600_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952697_953783_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953881_954832_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954828_955803_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955927_956839_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957115_957508_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957637_958588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958617_958800_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959572_960754_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960969_961647_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961643_962369_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962494_963076_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963446_966128_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|966130_967261_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|967253_968339_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968425_969325_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969321_970650_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970664_971336_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971523_973239_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973240_973600_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973791_974106_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974148_975369_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975365_976307_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976303_977293_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977327_977912_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978010_978961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979041_979953_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980013_981159_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981178_982093_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982164_982914_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982913_983843_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984086_985913_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985995_986637_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986826_987861_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989703_990768_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991565_992474_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993961_995236_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995389_995770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995777_996650_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996955_997336_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997546_998272_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|998367_999318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999422_1000472_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000609_1001626_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003134_1003707_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003766_1004498_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004549_1005467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006274_1009454_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009450_1010833_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010902_1011154_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011299_1011914_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012100_1014161_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014290_1015142_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015138_1015765_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015761_1017516_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017808_1020514_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020526_1022188_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022200_1023991_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024212_1025388_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025430_1026381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026479_1027430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	1048381	1099043	4112678	transposase,holin,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1048381_1049332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049630_1050368_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050803_1051127_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051161_1051722_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051842_1052718_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052730_1053678_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053779_1054073_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054099_1056157_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056171_1056672_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056745_1058452_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059315_1060368_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060420_1060810_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060818_1061451_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061550_1062567_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063397_1064405_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064401_1066045_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066041_1066929_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067069_1067543_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067532_1068555_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068551_1069979_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070916_1071933_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072265_1073201_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073250_1075131_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075197_1075542_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075686_1076823_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076819_1077893_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078050_1079487_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079577_1080219_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080554_1081571_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083511_1084462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085766_1087188_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087451_1088168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088252_1088570_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088610_1089024_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089025_1089385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089427_1090972_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091055_1091886_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091920_1093075_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093117_1093990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062826528.1|1094106_1096395_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097601_1098066_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098092_1099043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	1319001	1387487	4112678	transposase	Planktothrix_phage(33.33%)	56	NA	NA
WP_005012808.1|1319001_1319952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320720_1321359_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322248_1322695_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322776_1323478_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323478_1324246_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324242_1325481_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325480_1326407_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326509_1327625_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327640_1328591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328944_1329526_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329522_1330356_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330566_1331880_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332056_1332938_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332957_1333809_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333861_1334950_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335060_1336188_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336422_1337034_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337131_1338082_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338303_1338681_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338828_1339326_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339322_1339850_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339983_1340799_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340811_1341993_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342040_1342934_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343060_1343531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343656_1344484_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|1345575_1346040_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346051_1346753_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346862_1347363_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347445_1348624_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350251_1350587_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350774_1352223_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352280_1352625_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352731_1353271_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353363_1354314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354331_1354571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355052_1355484_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355665_1356070_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357306_1357630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357632_1358520_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358552_1358978_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359049_1359403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359642_1360149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360187_1361519_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361578_1362394_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362390_1363245_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366307_1368851_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370217_1371972_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371968_1374089_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374093_1376289_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376285_1379627_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382429_1383380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383445_1383625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383741_1384497_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384483_1385629_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386536_1387487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	1447978	1503466	4112678	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447978_1448929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450130_1450577_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450569_1452045_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452041_1452797_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452789_1453800_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453789_1455466_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455778_1456111_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456124_1456520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456529_1456856_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456852_1457179_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457105_1458128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458124_1458475_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458522_1458951_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458958_1460332_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460472_1460850_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461112_1462420_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462480_1463311_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463307_1463796_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463837_1465358_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465401_1465878_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466681_1469279_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469308_1470130_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470856_1471606_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471789_1472668_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472765_1473482_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473496_1474057_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474223_1474988_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475007_1475865_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475861_1477061_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477100_1478435_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478487_1480824_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480949_1481513_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481521_1482613_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482684_1483140_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483140_1483935_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483931_1485113_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485099_1485705_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485701_1486475_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486486_1487314_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487475_1489839_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489906_1490626_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490749_1491175_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491209_1492160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492277_1493204_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493269_1494427_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494407_1494875_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495022_1495973_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495989_1496424_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496413_1496764_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496960_1498115_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498111_1499284_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499331_1500225_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500270_1500708_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500767_1501457_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501466_1502417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502515_1503466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	1598163	1658075	4112678	transposase,tRNA	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1598163_1598652_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598769_1599348_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599453_1599822_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599920_1600871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600877_1601990_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602676_1603879_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603914_1604061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1604082_1606743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606755_1610160_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610827_1613053_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613099_1613426_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613476_1614085_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614183_1615134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615232_1616183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616252_1617017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617013_1617550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617716_1618568_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618627_1619254_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619250_1620201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620299_1621412_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621401_1622403_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622508_1624020_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624016_1625321_-	imelysin	NA	NA	NA	NA	NA
WP_033446227.1|1625432_1625990_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930432.1|1626260_1626815_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627270_1627486_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627740_1630338_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630334_1631522_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632180_1632795_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632883_1634005_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634022_1634928_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635820_1636771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636952_1637705_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637773_1638433_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638429_1639158_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639170_1641450_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641474_1641678_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641719_1642352_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642487_1643405_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643401_1644115_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644352_1645123_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645127_1645727_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645971_1647462_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647520_1647805_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1647942_1648098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1648370_1649297_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649433_1650174_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650340_1651717_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651898_1652804_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654455_1656258_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1656384_1657026_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1657124_1658075_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	1703247	1752527	4112678	transposase	Brazilian_cedratvirus(25.0%)	41	NA	NA
WP_005013747.1|1703247_1704198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704256_1705030_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705022_1706579_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706575_1707526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708852_1709455_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709694_1710396_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710389_1711172_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711356_1712307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712405_1713143_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713332_1714091_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714137_1715127_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715304_1716273_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717812_1718781_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718789_1719731_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720204_1721215_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721205_1722720_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722716_1724063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724065_1725100_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725149_1726775_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727327_1728278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728382_1729330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729383_1731198_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731190_1731865_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731994_1735069_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735082_1735382_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735696_1736320_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736563_1737433_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737410_1738355_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738440_1739367_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739479_1740259_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740249_1741446_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741476_1742427_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742648_1743338_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743402_1744158_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744209_1745202_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745211_1746165_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746280_1747243_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748644_1749073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749069_1750020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750313_1751036_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005012808.1|1751576_1752527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	2202870	2268419	4112678	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2202870_2203821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204021_2204831_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2204955_2205906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205902_2206796_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206920_2207115_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207114_2207456_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2207465_2209328_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2209457_2209970_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209972_2210296_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210297_2210708_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210745_2211957_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211974_2212487_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212702_2213194_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213446_2215483_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2215560_2216763_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2216891_2217542_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219099_2220050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220620_2220833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220850_2221582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221616_2222258_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222250_2222919_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225131_2225908_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225929_2227087_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227083_2227515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2227511_2228309_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2228328_2228784_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228796_2229768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229833_2231057_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231284_2232235_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232358_2234812_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235000_2236305_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236409_2237063_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237065_2238376_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2238572_2239133_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239244_2239445_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239790_2240357_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240440_2240644_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240950_2241271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241312_2241594_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241668_2242925_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243307_2243637_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245207_2246029_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246028_2247168_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247174_2248071_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2248085_2249993_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250352_2252965_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253017_2255318_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255314_2256523_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2256784_2257159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257155_2258106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258204_2260199_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260258_2261224_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261213_2264075_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264077_2264584_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264688_2265897_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265898_2266837_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2266998_2267472_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2267468_2268419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	2538320	2604041	4112678	transposase,tRNA,protease	Salmonella_phage(15.38%)	60	NA	NA
WP_023853254.1|2538320_2540264_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2540260_2541181_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2541200_2541788_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2541780_2542671_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2542667_2543429_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2543434_2544319_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2544341_2546135_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2546265_2547753_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2547790_2548849_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2548848_2549349_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2549361_2549961_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2549957_2550458_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2550459_2551689_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2551878_2552118_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2552300_2553053_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2553054_2553990_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2554071_2555058_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2555057_2556116_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2556172_2556355_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2556406_2557000_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2557108_2557708_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2557704_2558415_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2558416_2559244_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2561060_2562302_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562313_2563087_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563113_2564064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564162_2564945_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565033_2566260_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2566985_2568371_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568389_2568995_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2568991_2570848_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570844_2571645_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571659_2572853_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572920_2573895_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574017_2575241_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575351_2577556_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577850_2578510_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578517_2578724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579062_2579818_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2579833_2579995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2580088_2580604_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580876_2581194_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581381_2581618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581908_2583264_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583310_2584651_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584752_2585385_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585384_2587754_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587786_2588746_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588732_2589419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589415_2589748_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589863_2590814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590912_2591863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2591859_2593926_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2593925_2594198_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2594892_2594982_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2594981_2596766_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2596789_2598955_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2598965_2599565_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2602386_2603082_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2603090_2604041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	2694686	2757922	4112678	transposase,tRNA	Salmonella_phage(25.0%)	54	NA	NA
WP_010931007.1|2694686_2697104_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697116_2698139_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698213_2698573_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698588_2698786_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003816756.1|2700265_2700715_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700711_2701662_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701772_2703221_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703335_2703581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703720_2704671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704915_2705629_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705751_2705979_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706273_2706912_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707020_2708055_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708051_2709002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709417_2709942_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709945_2710215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710413_2711475_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711558_2713193_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713194_2713998_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714026_2714986_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2714989_2716504_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716540_2717545_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2717976_2718447_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718482_2719094_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719124_2719748_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719828_2721361_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721395_2722613_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722680_2723712_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723708_2724878_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724871_2725552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725713_2726556_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726718_2727690_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727861_2728740_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728762_2729833_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729873_2730824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853289.1|2730841_2731060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931030.1|2731116_2732475_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931031.1|2732586_2734314_+	sulfate permease	NA	NA	NA	NA	NA
WP_005013747.1|2734935_2735886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247978.1|2736635_2737049_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2737062_2738298_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2738305_2739100_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2739096_2739900_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2739926_2740904_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2740932_2742504_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2742514_2743336_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2745060_2746491_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2746503_2747193_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2747288_2748629_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2748630_2748888_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2749241_2750834_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2750930_2752391_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2752613_2753225_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2756971_2757922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	2786289	2859158	4112678	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2786289_2786706_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786816_2787449_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787477_2787921_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787942_2789034_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_162832304.1|2789088_2789880_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790024_2790645_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790784_2791258_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792397_2793348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793344_2801006_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801246_2805293_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_023853219.1|2805650_2806187_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806183_2807482_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807561_2808590_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808850_2809801_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2809797_2810748_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811064_2811670_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811723_2813037_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813111_2813582_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813581_2814370_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814380_2816033_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816120_2817071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818232_2818739_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818735_2819500_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819515_2819800_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819864_2820854_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821025_2821955_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821926_2822613_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822646_2823192_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823236_2824502_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824498_2825401_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826582_2827527_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827621_2829139_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829180_2830809_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830916_2831798_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834910_2835285_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835309_2835648_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835691_2837326_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837364_2838711_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838818_2840240_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840309_2840894_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2840996_2841947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842080_2843187_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843197_2844295_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844439_2845645_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845651_2846173_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846169_2846652_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846657_2846909_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846889_2847375_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847510_2850972_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2850989_2851874_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851883_2852315_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852561_2853065_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853142_2854543_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854617_2855493_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855489_2856497_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856964_2857270_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857360_2857951_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858141_2859158_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	2862301	2929112	4112678	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2862301_2863252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863350_2864301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2864297_2865092_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2865123_2865828_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2865902_2866703_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2866699_2867107_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2867103_2867745_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2867737_2869738_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2870998_2872330_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2872326_2873277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874983_2875250_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875957_2876296_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880849_2881452_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881548_2882838_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882895_2883627_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883623_2884427_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884423_2885512_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885508_2886438_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886586_2887732_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887753_2888704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2888721_2888880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889034_2892856_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893012_2893681_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893685_2895359_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895377_2896697_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896701_2899017_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899072_2901241_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901237_2906418_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906516_2906831_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907058_2907304_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907398_2907917_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908016_2909222_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909337_2910735_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910851_2911430_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911502_2912894_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913061_2914012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914292_2914913_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914909_2915323_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915319_2916363_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916418_2916607_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916616_2917381_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917471_2918128_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918219_2918978_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919003_2920605_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920805_2921810_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921910_2922174_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_023853341.1|2922291_2923059_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923658_2924609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_151243721.1|2926992_2928090_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928161_2929112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	2959498	2998687	4112678	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2959498_2960449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960466_2960616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960569_2961466_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963743_2965969_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966133_2967222_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967178_2967832_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967879_2968677_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969208_2970159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970239_2971388_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971444_2972395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972493_2972799_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972827_2973262_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973263_2974508_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974504_2975215_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975229_2976141_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976503_2976908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976904_2977363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977369_2978278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978274_2979141_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979127_2979955_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979965_2981093_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982170_2983409_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983450_2984713_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984719_2985472_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985523_2985709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985984_2986449_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_023996698.1|2986528_2987140_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987284_2989393_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989389_2990340_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990443_2991064_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991167_2991908_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993042_2994167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994212_2994581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994822_2995773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996808_2997351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997548_2997719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997736_2998687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	3385231	3505475	4112678	transposase,tRNA	Acinetobacter_phage(20.0%)	101	NA	NA
WP_023995489.1|3385231_3386182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386586_3387231_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387255_3387840_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387940_3388558_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388560_3390276_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390272_3390581_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390597_3391215_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391259_3391562_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391662_3392517_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392704_3392929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393098_3393371_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393788_3394196_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394565_3395360_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395460_3396696_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396764_3397781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397792_3399169_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399165_3400362_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400358_3401897_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401893_3403153_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405093_3406044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406810_3407905_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407897_3409232_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409185_3409869_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409894_3411058_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3411054_3412056_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3412055_3412928_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412924_3413674_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413670_3414462_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414458_3415598_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415873_3416659_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416692_3417475_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417478_3417868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3419007_3419871_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3419906_3420995_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3420991_3421942_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422295_3425274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426200_3427079_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3428043_3428994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3430076_3431027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3431023_3431491_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3431533_3432304_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3432324_3433125_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3433135_3434545_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3434639_3435425_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3435664_3436681_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3436788_3437181_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3437318_3437999_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3438003_3438975_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3439070_3440021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3441525_3442227_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3442226_3443651_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3443667_3444723_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3444719_3446060_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3446175_3447939_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3448050_3448929_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3449041_3449857_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3449860_3450112_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3450196_3451213_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3451543_3451765_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931364.1|3454125_3454992_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3455540_3456749_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3456828_3458400_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3458517_3459453_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3459641_3460586_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3461153_3466871_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3466876_3468004_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3468059_3468686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3468957_3469974_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3470069_3470780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3470776_3471766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3471861_3473493_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3473495_3474233_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3474388_3475261_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3475610_3476750_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3476746_3477406_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3477477_3478110_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3478139_3478658_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3478668_3479778_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3479824_3480679_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3480680_3481583_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3482805_3483756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3485512_3486502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3486498_3486657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3486677_3487466_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3487462_3488494_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3488512_3489076_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3489131_3490652_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3490915_3491620_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3491627_3492356_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3492470_3492845_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3492887_3494177_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3494173_3495343_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3495339_3496179_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3496238_3497174_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3497186_3498137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3498235_3499198_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3499229_3499589_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3499713_3500616_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3500617_3502390_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3502424_3503201_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3504524_3505475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013886	Bordetella pertussis strain J099 chromosome, complete genome	4112678	3520413	3578486	4112678	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3520413_3521364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3521492_3522626_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3522669_3523575_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3523577_3525278_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3525274_3526195_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3526202_3527180_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852626.1|3527238_3528198_-	succinylglutamate desuccinylase/aspartoacylase	NA	NA	NA	NA	NA
WP_003815317.1|3530247_3530484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3530610_3531474_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3531562_3532384_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3532463_3533201_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3533197_3534190_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3534342_3534966_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3535010_3536159_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3538482_3539433_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3539773_3540724_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3540822_3541773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3542069_3542567_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3542609_3544385_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3544392_3545259_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931405.1|3545265_3545991_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023852623.1|3547169_3547940_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3548253_3548844_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3548877_3550206_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3550280_3551426_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3551537_3552536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3552498_3552933_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3554449_3555334_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3555330_3556536_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3556532_3557393_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3557505_3559296_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_023852857.1|3559336_3559987_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
WP_010929971.1|3560002_3560311_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3560476_3561763_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3563196_3564147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3566098_3567313_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3567418_3568408_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3568404_3569013_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3569025_3569655_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3569651_3570272_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3570303_3571095_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3571946_3572402_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3572420_3573347_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3573400_3574687_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3575617_3576490_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3576486_3577437_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3577535_3578486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
