The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	27282	70036	4108283	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	77634	136108	4108283	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	164894	225405	4108283	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	233337	286925	4108283	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	390858	448367	4108283	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	590421	704177	4108283	tRNA,protease,terminase,tail,transposase	uncultured_Caudovirales_phage(14.81%)	111	NA	NA
WP_005013747.1|590421_591372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591847_592738_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592734_593556_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593756_594248_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594266_595340_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595386_596490_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596565_597186_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597206_597716_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597770_598022_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598085_599219_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599226_599613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599609_602129_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602557_602896_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602892_603399_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603460_604261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604371_605313_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605406_606942_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608621_610472_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610475_611309_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611308_612250_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612501_613473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613614_615903_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616209_617118_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617172_618138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618212_619874_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619945_620656_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620804_621755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622453_622837_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622894_623497_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_005013747.1|623493_624444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820995.1|624563_624965_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625080_625992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625988_626570_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627364_628099_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628139_629189_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629336_629915_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630301_631279_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631372_635767_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635967_636816_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636974_637787_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637842_638793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638891_639692_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639753_640137_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640148_641501_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641788_642118_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642120_642870_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643052_643973_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644019_644232_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644254_644677_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644693_645794_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645890_647408_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647483_648323_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648344_649217_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649307_650402_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650695_651646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651720_652662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|652745_653105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|653486_654524_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|654840_656181_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|656190_656643_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|656739_657921_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|657986_659012_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659052_659292_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659361_660951_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660950_661499_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661579_662152_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662170_663082_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663155_664124_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664246_665320_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665324_667145_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667221_668172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668260_668596_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668729_669380_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669401_670820_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670889_671645_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671613_672372_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672382_673264_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673280_673988_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673990_674749_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674958_676701_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676693_677218_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677257_678052_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678219_679293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679391_680342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680593_680800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680871_681483_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682037_682289_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682281_682971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683227_684178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684817_685303_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685289_686567_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686569_687988_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688016_689072_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689077_689320_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689442_690045_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690473_691424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692098_692350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692412_692895_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692908_693097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693096_693492_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693488_693887_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693883_694306_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694313_694814_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695068_695587_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695596_695926_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695943_696234_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696259_698872_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698881_699241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699308_699842_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699838_700228_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700220_704177_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	710343	764273	4108283	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710343_712074_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712126_712555_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712557_713238_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713237_713696_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713732_714707_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714723_716040_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716071_716569_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716655_717345_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717344_718394_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718390_719185_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719353_719704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719679_720237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721366_722317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724454_725684_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725686_727129_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727233_728379_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728410_729208_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729232_730792_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730788_733161_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733270_734374_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734373_735066_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735209_735911_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735895_736273_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737004_737955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738114_738987_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739327_739546_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739585_740965_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741006_742404_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742443_744096_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744099_744984_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744983_745925_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746003_747623_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747789_748605_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748672_749242_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749242_750193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750847_751945_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751978_753244_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753401_754352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754595_755186_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755201_757646_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757765_758737_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758868_759393_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759352_760303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760524_762720_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762792_763200_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763322_764273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	886862	954838	4108283	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886862_887879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888075_889059_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890657_892046_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892076_893066_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893176_894409_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894690_895491_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895513_897745_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898532_898979_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|899000_899747_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899890_900868_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901501_902113_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902106_903324_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903464_904415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904411_905131_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905251_907411_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907501_907771_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907859_908066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908064_908592_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908610_909390_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909557_910574_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910646_911138_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911148_912864_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914027_914978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914974_916807_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917205_917865_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918392_919073_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919354_920071_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920085_921387_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923531_926420_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926643_927996_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928024_928546_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928542_929997_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930031_930280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930385_931261_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931286_932342_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932354_933146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933178_934549_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935725_936676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936728_936950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937109_937322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937441_938560_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938656_938872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939065_939317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939429_940380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940376_940760_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940814_942629_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942778_943606_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943651_944632_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944628_944841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944837_946019_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946182_946917_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946918_949531_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949666_951580_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952195_952606_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952703_953789_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953887_954838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	998367	1070884	4108283	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998367_999318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999422_1000472_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000609_1001626_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003134_1003707_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003766_1004498_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004549_1005467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006274_1009454_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009450_1010833_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010902_1011154_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011299_1011914_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012100_1014161_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014290_1015142_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015138_1015765_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015761_1017516_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017808_1020514_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020526_1022188_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022200_1023991_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024212_1025388_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025430_1026381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026479_1027220_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027414_1029451_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029468_1030479_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030596_1031790_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031819_1032593_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032589_1033780_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033805_1034744_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034740_1037089_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037243_1037885_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039214_1039367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039398_1039947_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039965_1040451_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040628_1041567_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041569_1041887_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041932_1042877_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044557_1045208_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045261_1045597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045593_1046454_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046470_1046752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046825_1047089_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047332_1048283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048581_1049319_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049754_1050078_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050112_1050673_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050793_1051669_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051681_1052629_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052730_1053024_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053050_1055108_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055122_1055623_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055696_1057403_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058266_1059319_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059371_1059761_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059769_1060402_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060501_1061518_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062348_1063356_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063352_1064996_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064992_1065880_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066020_1066494_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066483_1067506_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067502_1068930_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069867_1070884_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	1074637	1135664	4108283	tRNA,transposase,holin	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1074637_1075774_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075770_1076844_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077001_1078438_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078528_1079170_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079505_1080522_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080854_1083602_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083668_1085090_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085353_1086070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086154_1086472_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086512_1086926_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086927_1087287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087329_1088874_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088957_1089788_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089822_1090977_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091019_1091892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092008_1094297_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095503_1095968_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095994_1096945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096962_1097100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097312_1098089_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098133_1098991_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099012_1100029_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100163_1101204_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101398_1103480_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103715_1105209_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105439_1106234_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106454_1107813_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107809_1108652_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108670_1110557_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110498_1110750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110794_1111427_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111445_1112048_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112199_1113150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113730_1114438_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114796_1115783_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115922_1116936_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116932_1117883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117995_1118454_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118490_1119804_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119821_1120193_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120189_1121653_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121793_1122522_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122503_1125353_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125565_1126516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126683_1127508_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127507_1128386_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129290_1130406_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130434_1131229_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131225_1133091_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133169_1133802_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133798_1134101_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134143_1135664_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	1153235	1219754	4108283	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153235_1155032_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155031_1156000_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156069_1156915_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156982_1157537_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157583_1158534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158632_1159265_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159429_1161712_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161866_1164563_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164688_1165177_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167587_1170458_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170503_1171718_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171947_1173375_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173472_1174564_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174576_1175335_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175422_1176325_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176321_1177272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177401_1178385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178439_1179162_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180640_1181996_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182076_1184452_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184616_1186692_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186753_1187548_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187655_1188618_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188605_1189361_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189468_1191106_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191173_1191911_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192013_1192589_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192761_1193298_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193330_1193645_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193660_1194506_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194544_1195924_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196001_1196883_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196981_1197932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197928_1198339_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198446_1199301_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199293_1200256_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200301_1201426_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201531_1202410_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202534_1203314_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203467_1204889_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205323_1207021_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207247_1208189_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208515_1209262_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209269_1210196_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210317_1211235_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211274_1212228_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212252_1212831_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214504_1215113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215190_1215544_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215627_1216617_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216819_1217770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217856_1218807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218803_1219754_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	1270682	1327893	4108283	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1270682_1271633_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275379_1275991_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276213_1277674_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277770_1279363_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279716_1279974_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279975_1281316_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281411_1282101_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282113_1283544_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285268_1286090_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286100_1287672_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287700_1288678_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288704_1289508_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289504_1290299_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290306_1291542_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291555_1291969_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292718_1293669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294290_1296018_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296129_1297488_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297780_1298731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298771_1299842_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299864_1300743_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300914_1301886_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302048_1302891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303052_1303733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303726_1304896_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304892_1305924_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305991_1307209_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307243_1308776_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308856_1309480_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309510_1310122_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310157_1310628_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311059_1312064_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312100_1313615_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313618_1314578_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314606_1315410_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315411_1317046_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317129_1318191_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318389_1318659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318662_1319187_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319602_1320553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320549_1321584_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321692_1322331_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322625_1322853_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322975_1323689_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323933_1324884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325023_1325269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325383_1326832_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326942_1327893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	1418126	1470279	4108283	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1418126_1419077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419243_1419597_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419609_1419972_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420013_1420439_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420641_1421898_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422096_1423077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423226_1424468_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424566_1425517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425525_1426221_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429042_1429642_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429652_1431818_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431841_1433626_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433625_1433715_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434409_1434682_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434681_1436748_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436744_1437695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437793_1438744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438859_1439192_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439188_1439875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439861_1440821_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440853_1443223_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443222_1443855_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443956_1445297_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445343_1446699_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446989_1447226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447413_1447731_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448003_1448519_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448789_1449545_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449883_1450090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450097_1450757_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451051_1453256_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453366_1454590_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454712_1455687_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455754_1456948_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456962_1457763_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457759_1459616_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459612_1460218_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460236_1461622_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462347_1463574_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463662_1464445_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464543_1465494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465520_1466294_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466305_1467547_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469328_1470279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	1514204	1582290	4108283	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514204_1514693_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514810_1515389_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515494_1515863_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515961_1516912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516918_1518031_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518717_1519920_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520123_1522784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522796_1526201_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526868_1529094_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529140_1529467_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529517_1530126_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530224_1531175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531244_1532009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532005_1532542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532708_1533560_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533619_1534246_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534242_1535193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535291_1536404_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536393_1537395_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537500_1539012_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539008_1540313_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540424_1540985_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541252_1541807_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542262_1542478_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542732_1545330_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545326_1546514_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547172_1547787_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547875_1548997_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549014_1549920_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550812_1551763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551944_1552697_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552765_1553425_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553421_1554150_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554162_1556442_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556466_1556670_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556711_1557344_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557479_1558397_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558393_1559107_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559344_1560115_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560119_1560719_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560963_1562454_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562512_1562797_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563362_1564289_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564425_1565166_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565332_1566709_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566890_1567796_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569447_1571250_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571367_1572018_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572116_1573067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573088_1574309_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574494_1575907_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575970_1577038_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577037_1578525_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578534_1579479_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579638_1580337_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580414_1581320_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581339_1582290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	1618239	1673830	4108283	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618239_1619190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619248_1620022_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620014_1621571_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621567_1622518_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623844_1624447_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624686_1625388_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625381_1626164_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626348_1627299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627397_1628135_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628324_1629083_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629129_1630119_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630296_1631265_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632804_1633773_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633781_1634723_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635196_1636207_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636197_1637712_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637708_1639055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639057_1640092_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640141_1641767_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642319_1643270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643374_1644322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644375_1646190_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646182_1646857_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646986_1650061_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650074_1650374_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650688_1651312_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651555_1652425_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652402_1653347_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653432_1654359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654471_1655251_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655241_1656438_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656468_1657419_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657640_1658330_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658394_1659150_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659201_1660194_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660203_1661157_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661272_1662235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663636_1664065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664061_1665012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665305_1666028_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666466_1667654_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667657_1668008_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669757_1670729_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670742_1671456_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671460_1672378_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672484_1672781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672879_1673830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	1906392	2037985	4108283	tRNA,transposase	uncultured_Caudovirales_phage(16.67%)	112	NA	NA
WP_003818515.1|1906392_1909050_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1909127_1910330_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1910326_1910839_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1910961_1911399_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1911675_1912626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069089.1|1912724_1913675_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1913838_1915734_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1915847_1916015_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1916078_1916315_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1916683_1917835_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1919398_1920349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1920800_1921802_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1921974_1922832_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1922828_1924091_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1924191_1924566_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1924638_1925826_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1925910_1926681_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1926794_1927559_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1927509_1928811_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1928807_1929614_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1931358_1932330_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1932486_1932999_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1933157_1934132_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1935132_1935927_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1935952_1936759_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1936869_1937460_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1937470_1938649_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1938751_1939126_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1939378_1940710_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1940776_1944007_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1945497_1946244_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1946328_1946790_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1946827_1947886_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1947848_1949678_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1949717_1950290_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1951714_1952536_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1952854_1954177_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1954536_1955172_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1955131_1956082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1956952_1957825_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1957902_1959042_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1959400_1960657_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1960662_1961190_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1961194_1962013_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1962012_1962735_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1962756_1963071_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1963088_1964237_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1964267_1965143_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1965139_1966459_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1966531_1967728_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1967738_1969226_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1971820_1972720_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1972857_1973823_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1973921_1974872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1974970_1975921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1976142_1977093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|1977089_1977392_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|1977551_1977956_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|1977948_1979175_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|1979171_1979618_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|1979687_1980470_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|1980511_1982017_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|1982302_1983136_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|1984573_1985395_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|1985413_1986268_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|1986271_1987243_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|1987927_1988104_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1988589_1989540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1990677_1990974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1991148_1992501_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1992643_1993660_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1995639_1996653_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|1996739_1997645_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1997801_1998146_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1998303_1998762_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1998775_2000992_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2000988_2002050_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2002078_2003053_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2003004_2003823_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2003835_2004444_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2004618_2005014_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2005032_2006472_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2006500_2006848_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2006866_2007817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2008469_2009420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2009503_2011321_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2011394_2012042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2012054_2012984_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2013153_2013618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2013865_2014546_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2014594_2016286_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2016301_2016853_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2016849_2017221_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2017333_2018170_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2018180_2018705_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2018802_2018982_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2019111_2020086_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2020216_2020573_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2020562_2021438_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2021536_2022421_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2022442_2023738_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2024686_2025337_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2025424_2026945_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2027202_2029068_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2030113_2031064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2031081_2031222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2032036_2032396_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2032383_2033820_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2033816_2034470_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2034466_2035660_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2035763_2037038_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2037034_2037985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	2049189	2089880	4108283	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2049189_2050140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2050238_2051189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2051148_2051562_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2051846_2052146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2052555_2054838_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2055303_2055498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2055523_2057554_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2057573_2057786_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2058063_2058603_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2058716_2060012_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2060088_2061246_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2061429_2062329_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2062347_2063652_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2063617_2064724_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2064811_2065048_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2065186_2066257_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2066260_2067616_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2067642_2068800_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2068805_2069444_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2069445_2070741_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2070790_2072077_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2072092_2072599_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2072595_2073744_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2073771_2074197_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2074519_2077402_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2077494_2078250_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2079015_2080365_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2080463_2081414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2081512_2082463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2082536_2083010_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2083035_2084244_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2084240_2085014_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2085013_2085637_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2085802_2086063_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2086366_2086948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2087014_2087269_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2087255_2089880_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	2117663	2183212	4108283	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2117663_2118614_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2118814_2119624_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2119748_2120699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2120695_2121589_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2121713_2121908_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2121907_2122249_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2122258_2124121_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2124250_2124763_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2124765_2125089_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2125090_2125501_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2125538_2126750_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2126767_2127280_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2127495_2127987_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2128239_2130276_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2130353_2131556_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2131684_2132335_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2133892_2134843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2135413_2135626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2135643_2136375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2136409_2137051_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2137043_2137712_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2139924_2140701_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2140722_2141880_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2141876_2142308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2142304_2143102_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2143121_2143523_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2143589_2144561_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2144626_2145850_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2146077_2147028_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2147151_2149605_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2149793_2151098_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2151202_2151856_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2151858_2153169_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2153347_2153926_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2154037_2154238_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2154583_2155150_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2155233_2155437_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2155743_2156064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2156105_2156387_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2156461_2157718_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2158100_2158430_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2160000_2160822_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2160821_2161961_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2161967_2162864_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2162878_2164786_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2165145_2167758_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2167810_2170111_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2170107_2171316_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2171577_2171952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2171948_2172899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172997_2174992_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175051_2176017_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176006_2178868_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178870_2179377_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179481_2180690_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180691_2181630_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181791_2182265_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182261_2183212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	2476859	2535103	4108283	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2476859_2477810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478289_2478946_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478960_2480628_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480630_2481260_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481471_2482566_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482710_2483523_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483526_2485110_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485280_2486411_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486597_2487674_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487755_2488406_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488420_2489824_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490107_2490926_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490922_2491627_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492526_2493642_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493675_2494050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494072_2495230_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495242_2495476_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496110_2499080_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499094_2499304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499455_2500085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500081_2502139_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502195_2502876_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502872_2503433_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503439_2504537_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504689_2505283_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505279_2506572_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506585_2507128_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507137_2507974_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508007_2509069_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509110_2510163_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510178_2510481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510622_2511573_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2511751_2513446_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513442_2514528_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514575_2515475_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515485_2516130_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517151_2520394_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520404_2521559_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521785_2522748_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2522846_2523797_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523895_2524846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524855_2525545_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525604_2526042_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_062826531.1|2526087_2526981_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527028_2528201_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528197_2529352_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2529548_2529899_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529888_2530323_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530339_2531290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531437_2531905_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531885_2533043_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533108_2534035_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534152_2535103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	2577381	2643881	4108283	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010929591.1|2577381_2578332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578701_2579274_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579276_2580287_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580279_2580780_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580790_2581132_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581200_2581935_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581951_2582221_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582243_2583032_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583078_2584095_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584311_2585754_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585932_2587552_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587672_2589493_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589571_2591104_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591137_2592784_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592853_2593876_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593893_2595027_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595029_2595719_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595718_2596504_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596547_2597312_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597350_2598772_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2598837_2599542_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599589_2600009_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600021_2600429_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600612_2601323_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601449_2601740_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601757_2602240_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606745_2607900_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608205_2609222_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609468_2610257_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610323_2611004_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611000_2611771_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611869_2612820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612875_2613793_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2613803_2614982_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615001_2615997_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617585_2618194_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618181_2619222_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619239_2620202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620198_2621392_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621388_2622186_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622211_2623198_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623216_2625256_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625457_2626138_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626151_2627063_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627059_2627638_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627776_2628682_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628689_2632109_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632096_2634697_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635652_2636285_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636678_2637437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637433_2638636_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2638823_2639774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640681_2641827_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2641813_2642569_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642685_2642865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642930_2643881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	2807486	2862003	4108283	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807486_2808437_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808765_2809371_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809424_2810738_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2810812_2811283_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811282_2812071_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812081_2813734_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_076879566.1|2813821_2814772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2814870_2815821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816982_2817489_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817485_2818250_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818265_2818550_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818614_2819604_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819775_2820705_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820676_2821363_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821396_2821942_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821986_2823252_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823248_2824151_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825332_2826277_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826371_2827889_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827930_2829559_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829666_2830548_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833660_2834035_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834059_2834398_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834441_2836076_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836114_2837461_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837568_2838990_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839059_2839644_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839746_2840697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840831_2841938_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841948_2843046_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843190_2844396_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844402_2844924_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844920_2845403_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845408_2845660_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845640_2846126_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846261_2849723_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849740_2850625_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850634_2851066_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851312_2851816_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851893_2853294_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853368_2854244_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854240_2855248_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855715_2856021_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856111_2856702_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856892_2857909_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858100_2860437_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860519_2860954_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|2861052_2862003_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	2870028	2926814	4108283	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2870028_2870979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872685_2872952_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873659_2873998_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878551_2879154_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879250_2880540_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880597_2881329_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881325_2882129_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882125_2883214_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883210_2884140_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884288_2885434_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885455_2886406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886736_2890558_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890714_2891383_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891387_2893061_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893079_2894399_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894403_2896719_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896774_2898943_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898939_2904120_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904218_2904533_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904760_2905006_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905100_2905619_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905718_2906924_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907039_2908437_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908553_2909132_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909204_2910596_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910763_2911714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911994_2912615_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912611_2913025_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913021_2914065_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914120_2914309_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914318_2915083_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915173_2915830_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915921_2916680_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916705_2918307_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918507_2919512_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919612_2919876_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919993_2920770_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921360_2922311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924694_2925807_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925863_2926814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	2957200	3000891	4108283	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2957200_2958151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2958271_2959168_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961445_2963671_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2963835_2964924_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964880_2965534_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965581_2966379_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966910_2967861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967941_2969090_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969146_2970097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970195_2970501_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970529_2970964_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970965_2972210_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972206_2972917_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972931_2973843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974205_2974610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974606_2975065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975071_2975980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975976_2976843_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2976829_2977657_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977667_2978795_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979872_2981111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981152_2982415_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982421_2983174_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983225_2983411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983686_2984151_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984182_2984842_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984986_2987095_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987091_2988042_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988145_2988766_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988869_2989610_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990744_2991869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991914_2992283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992524_2993475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994510_2995053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995250_2995421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995438_2996389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996385_2997294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997420_2998257_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998769_2999879_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999940_3000891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	3382931	3436672	4108283	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382931_3383882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384286_3384931_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384955_3385540_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385640_3386258_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386260_3387976_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387972_3388281_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388297_3388915_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388959_3389262_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389362_3390217_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390404_3390629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3390798_3391071_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391488_3391896_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392265_3393060_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393160_3394396_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394464_3395481_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395492_3396869_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396865_3398062_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398058_3399597_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399593_3400853_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3402793_3403744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404510_3405605_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405597_3406932_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406885_3407569_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407594_3408758_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3408754_3409756_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409755_3410628_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410624_3411374_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411370_3412162_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412158_3413298_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413573_3414359_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414392_3415175_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415178_3415568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416707_3417571_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417606_3418695_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418691_3419642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419995_3422974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423900_3424779_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426727_3427678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427674_3428142_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428184_3428955_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428975_3429776_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429786_3431196_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431290_3432076_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432315_3433332_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433439_3433832_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433969_3434650_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434654_3435626_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435721_3436672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	3442827	3502127	4108283	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3442827_3444591_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444702_3445581_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445693_3446509_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446512_3446764_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446848_3447865_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448195_3448417_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450777_3451695_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452192_3453401_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453480_3455052_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455169_3456105_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456293_3457238_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3457805_3463523_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463528_3464656_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464711_3465338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465609_3466626_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466721_3467432_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467428_3468418_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468513_3470145_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470147_3470885_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471040_3471913_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472262_3473402_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473398_3474058_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474129_3474762_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474791_3475310_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475320_3476430_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476476_3477331_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477332_3478235_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479457_3480408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482164_3483154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483329_3484118_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484114_3485146_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485164_3485728_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485783_3487304_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487567_3488272_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488279_3489008_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489122_3489497_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489539_3490829_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3490825_3491995_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491991_3492831_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492890_3493826_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493838_3494789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494887_3495850_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495881_3496241_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496365_3497268_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497269_3499042_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499076_3499853_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501176_3502127_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	3517065	3575138	4108283	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517065_3518016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518144_3519278_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519321_3520227_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520229_3521930_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521926_3522847_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522854_3523832_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523890_3524925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526899_3527136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527262_3528126_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528214_3529036_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529115_3529853_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3529849_3530842_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530994_3531618_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531662_3532811_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535134_3536085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536425_3537376_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537474_3538425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538721_3539219_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539261_3541037_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541044_3541911_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541917_3542652_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3543821_3544616_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544905_3545496_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545529_3546858_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546932_3548078_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548189_3549188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549150_3549585_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551101_3551986_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551982_3553188_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553184_3554045_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554157_3555948_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555988_3556633_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556654_3556963_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557128_3558415_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3559848_3560799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562750_3563965_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564070_3565060_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565056_3565665_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565677_3566307_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566303_3566924_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566955_3567747_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568598_3569054_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569072_3569999_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570052_3571339_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572269_3573142_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573138_3574089_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574187_3575138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013879	Bordetella pertussis strain H533 chromosome, complete genome	4108283	4007350	4072262	4108283	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4007350_4007836_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007924_4008062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008054_4009035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009301_4010111_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010150_4010831_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4010824_4011283_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011294_4011657_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011739_4012423_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012478_4012787_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4012805_4013120_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013116_4015591_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015598_4016990_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016986_4017172_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017150_4017852_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017848_4018670_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4018650_4019775_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019767_4020787_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020992_4021883_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022127_4022919_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023001_4023376_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023353_4024763_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024755_4026138_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026472_4028077_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028154_4029126_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029136_4030063_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030453_4031404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031573_4032800_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032999_4033866_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033858_4034821_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034921_4035872_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035970_4036921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037019_4037970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037966_4039460_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039456_4042564_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042560_4045629_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045625_4046876_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047056_4047809_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047850_4048495_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048503_4049484_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049583_4050327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050409_4050757_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050854_4051697_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051741_4052629_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052655_4052844_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052941_4054399_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054385_4055912_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055930_4056398_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056397_4057420_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057540_4058281_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058335_4059436_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059437_4060628_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060747_4061764_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062082_4062754_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062750_4063659_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063870_4064518_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068378_4069446_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069456_4070266_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070355_4071129_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4071311_4072262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
