The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	27282	71085	4106376	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	78683	137157	4106376	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133749_134034_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	165943	226454	4106376	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212274_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220104_222948_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	234386	287974	4106376	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281475_282324_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	469551	587446	4106376	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_010929956.1|469551_470502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|471224_472499_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|472585_473668_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|473678_474491_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|474527_474854_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|474858_475419_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|475659_476652_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|476670_477666_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|477681_479058_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|479050_481432_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|481448_481838_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|481964_482195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|482299_483250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|483348_484299_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|484295_485168_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|486098_487385_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|487438_488365_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|488383_488839_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|489690_490482_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|490513_491134_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|491130_491760_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|491772_492381_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|492377_493367_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|493472_494687_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|496638_497589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|499022_500309_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|500474_500783_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|500804_501449_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|501489_503280_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|503392_504253_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|504249_505455_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|505451_506336_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|507852_508287_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|508249_509248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|509359_510505_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|510579_511908_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|511941_512532_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|512821_513616_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|514785_515520_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|515526_516393_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|516400_518176_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|518218_518716_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|519012_519963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|520061_521012_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|521352_522303_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|524626_525775_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|525819_526443_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|526595_527588_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|527584_528322_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|528401_529223_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|529311_530175_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|530301_530538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|532512_533547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|533605_534583_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|534590_535511_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|535507_537208_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|537210_538116_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|538159_539293_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|539421_540372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|540470_542540_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|542582_544685_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|544991_546068_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|546143_547028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|547210_547633_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|547642_549043_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|549085_549991_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|550089_551631_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|551665_552205_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|552217_552688_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|552825_553068_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|553184_554066_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|554138_554459_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|555310_556261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558395_560168_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562648_563599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563611_564547_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565442_566612_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566608_567898_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568429_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571709_572273_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573319_574108_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574283_575273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|575371_576322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578078_579029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580251_581154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581155_582010_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582056_583166_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583176_583695_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583724_584357_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584428_585088_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585084_586224_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586573_587446_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	591860	656742	4106376	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|591860_592877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593148_593775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593830_594958_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594963_600681_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601248_602193_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602381_603317_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603434_605006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605085_606294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606791_607709_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610069_610291_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610621_611638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611722_611974_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611977_612793_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612905_613784_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613895_615659_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010930208.1|616676_617627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927010.1|619233_620658_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|620657_621359_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|622863_623814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|623909_624881_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|624885_625566_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|625703_626096_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|626203_627220_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|627459_628245_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|628339_629749_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|629759_630560_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|630580_631351_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|631393_631861_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|631857_632808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|634756_635635_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|636561_639540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|639893_640844_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|640840_641929_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|641964_642828_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|643967_644357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|644360_645143_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|645176_645962_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|646237_647377_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|647373_648165_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|648161_648911_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|648907_649780_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|649779_650781_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|650777_651941_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|651966_652650_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|652603_653938_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|653930_655025_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|655791_656742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	675653	752962	4106376	integrase,tRNA,protease,transposase	Bacillus_phage(20.0%)	58	722790:722808	742678:742696
WP_023995489.1|675653_676604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|676702_678178_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|679765_680653_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|680655_681597_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|681642_683208_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|684985_686311_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|686493_687951_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|687914_688412_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|688442_689414_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|689466_689898_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|690027_690696_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|691424_692528_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|692633_693908_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|693919_694945_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|694946_696317_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|696317_697454_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|697500_699426_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|699422_700544_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|700540_701695_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|701691_702822_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|702829_704395_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|704401_705784_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|706062_706674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|706765_708181_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|708198_708909_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|708905_710228_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|710307_712269_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|712394_713708_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|713816_715115_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|715297_716206_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|716215_716425_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|716436_718116_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|718217_719171_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|719261_720089_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|720087_721974_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|721970_722570_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|722618_723518_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
722790:722808	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|723726_724677_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|724799_725414_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|725542_726139_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|726135_726918_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|726990_728082_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|728361_729489_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|729830_730877_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|731387_734144_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|734145_737097_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|737112_738324_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|738320_738521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|738507_739458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|739474_739969_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|739972_740230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|740773_741685_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|741766_742051_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|742834_743785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
742678:742696	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_014905963.1|745226_746798_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|747130_748984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|749028_751593_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|752011_752962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	997848	1100241	4106376	tRNA,transposase	Bacillus_virus(27.27%)	95	NA	NA
WP_003813026.1|997848_998964_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999064_999883_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999980_1000592_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000751_1002128_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002190_1002649_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002733_1003429_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003490_1003772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004334_1005087_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005131_1006208_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006204_1007155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007257_1007920_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008014_1008185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008537_1009539_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009541_1010738_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010758_1011562_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011642_1011939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011969_1012533_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012573_1013431_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013438_1014188_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014209_1015082_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015110_1015890_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015923_1016721_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019375_1019768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019761_1020622_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020625_1021588_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022364_1023054_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023914_1024865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025214_1026084_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026154_1026850_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026839_1027349_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027345_1028566_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028513_1029416_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030302_1031589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031627_1033001_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033039_1033741_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034039_1035029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035129_1035591_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035606_1036155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036296_1037772_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037877_1038969_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038972_1039755_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039764_1040553_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041678_1042113_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042109_1043120_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043163_1044090_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044376_1044745_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044961_1045912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045956_1048383_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048431_1049124_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049196_1050396_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050413_1051319_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051434_1052364_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052389_1053736_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053748_1054513_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054526_1055309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055501_1056452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056513_1057623_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058135_1058972_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059098_1060007_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060003_1060954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1060971_1061142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061339_1061882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062917_1063868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064109_1064478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064523_1065648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066782_1067523_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067626_1068247_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068350_1069301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069297_1071406_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071550_1072210_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072241_1072706_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072981_1073167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073218_1073971_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073977_1075240_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075281_1076520_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077597_1078725_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078735_1079563_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079549_1080416_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081782_1082187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082278_1083229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1083246_1083411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1083598_1084510_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084524_1085235_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085231_1086476_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086477_1086912_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086940_1087246_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087344_1088295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088351_1089500_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089580_1090531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091062_1091860_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091907_1092561_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092517_1093606_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093770_1095996_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098273_1099170_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099290_1100241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	1130627	1201597	4106376	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130627_1131578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131634_1132747_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135130_1136081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136671_1137448_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137565_1137829_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137929_1138934_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139134_1140736_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140761_1141520_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141611_1142268_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142358_1143123_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143132_1143321_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143376_1144420_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144416_1144830_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144826_1145447_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145727_1146678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146845_1148237_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148309_1148888_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149004_1150402_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150517_1151723_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151822_1152341_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152435_1152681_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152908_1153223_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1153321_1158502_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158498_1160667_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160722_1163038_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163042_1164362_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164380_1166054_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166058_1166727_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166883_1170705_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171035_1171986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172007_1173153_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173301_1174231_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174227_1175316_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175312_1176116_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176112_1176844_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176901_1178191_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178287_1178890_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183442_1183781_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184488_1184755_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186461_1187412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187408_1188740_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190000_1192001_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191993_1192635_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192631_1193039_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193035_1193836_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193910_1194615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194646_1195441_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1195437_1196388_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1196486_1197437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197535_1197970_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198052_1200389_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200580_1201597_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	1248991	1329866	4106376	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1248991_1249942_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249938_1250889_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251149_1252178_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252257_1253556_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253552_1254134_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254446_1258493_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258733_1266395_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266391_1267342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268481_1268955_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269094_1269715_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269850_1270651_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270705_1271797_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271818_1272262_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272290_1272923_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273033_1273450_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273442_1274135_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274241_1274616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274692_1275502_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275597_1276542_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276580_1277552_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277642_1278080_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278138_1279020_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280023_1280884_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280916_1282299_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282295_1283315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283687_1284182_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284189_1284930_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285010_1286615_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286654_1287443_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287568_1289734_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290614_1291427_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291439_1291748_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291865_1293596_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293597_1294800_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1294872_1295541_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295662_1296130_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296265_1297648_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297644_1298769_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298765_1301402_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301817_1302768_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306514_1307126_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307348_1308809_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308905_1310498_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310851_1311109_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311110_1312451_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312546_1313236_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313248_1314679_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316403_1317225_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317235_1318807_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318835_1319813_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319839_1320643_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320639_1321434_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321441_1322677_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322690_1323104_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323853_1324804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325425_1327153_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327264_1328623_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328915_1329866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	1414522	1470928	4106376	transposase	Enterococcus_phage(16.67%)	50	NA	NA
WP_010929969.1|1414522_1415473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930208.1|1415571_1416522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|1416524_1417478_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|1417505_1418357_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|1418362_1419391_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|1419387_1420431_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|1420498_1421524_-	dipeptidase	NA	NA	NA	NA	NA
WP_010930971.1|1421805_1423059_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|1423069_1423342_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|1423338_1426278_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|1426285_1426885_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|1426885_1427734_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|1427771_1428758_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|1428773_1430210_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|1430222_1431014_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|1431332_1432388_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_010930964.1|1432424_1433234_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|1433234_1433783_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|1433933_1434353_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|1434427_1436089_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010930961.1|1436104_1437004_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|1437118_1438123_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|1438180_1439269_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|1439350_1439593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|1439734_1440289_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|1440296_1440677_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|1440767_1442693_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|1442793_1443927_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|1444095_1446846_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|1447178_1447553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|1447590_1448133_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|1448136_1449309_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|1449330_1450218_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1450310_1451261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1451427_1451781_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1451793_1452156_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1452197_1452623_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1452825_1454082_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1454280_1455261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1455410_1456652_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1456750_1457701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1457709_1458405_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1461226_1461826_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1461836_1464002_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1464025_1465810_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1465809_1465899_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1466593_1466866_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1466865_1468932_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1468928_1469879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1469977_1470928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	1546383	1614468	4106376	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1546383_1546872_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1546989_1547568_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1547673_1548042_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1548140_1549091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1549097_1550210_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1550896_1552099_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1552302_1554963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1554975_1558380_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1559047_1561273_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1561319_1561646_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1561696_1562305_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1562403_1563354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1563423_1564188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1564184_1564721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1564887_1565739_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1565798_1566425_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1566421_1567372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1567470_1568583_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1568572_1569574_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1569679_1571191_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1571187_1572492_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1572603_1573164_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1573431_1573986_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1574441_1574657_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1574911_1577509_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1577505_1578693_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1579350_1579965_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1580053_1581175_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1581192_1582098_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1582990_1583941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1584122_1584875_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1584943_1585603_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1585599_1586328_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1586340_1588620_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1588644_1588848_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1588889_1589522_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1589657_1590575_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1590571_1591285_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1591522_1592293_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1592297_1592897_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1593141_1594632_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1594690_1594975_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1595540_1596467_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1596603_1597344_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1597510_1598887_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1599068_1599974_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1601625_1603428_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1603545_1604196_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1604294_1605245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1605266_1606487_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1606672_1608085_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1608148_1609216_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1609215_1610703_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1610712_1611657_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1611816_1612515_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1612592_1613498_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1613517_1614468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	1650417	1706008	4106376	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1650417_1651368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1651426_1652200_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1652192_1653749_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1653745_1654696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1656022_1656625_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1656864_1657566_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1657559_1658342_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1658526_1659477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1659575_1660313_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1660502_1661261_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1661307_1662297_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1662474_1663443_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664982_1665951_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665959_1666901_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1667374_1668385_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1668375_1669890_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1669886_1671233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1671235_1672270_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1672319_1673945_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1674497_1675448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1675552_1676500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1676553_1678368_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1678360_1679035_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1679164_1682239_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1682252_1682552_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1682866_1683490_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1683733_1684603_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1684580_1685525_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1685610_1686537_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1686649_1687429_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1687419_1688616_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1688646_1689597_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1689818_1690508_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1690572_1691328_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1691379_1692372_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1692381_1693335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1693450_1694413_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1695814_1696243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1696239_1697190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1697483_1698206_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1698644_1699832_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1699835_1700186_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1701935_1702907_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1702920_1703634_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1703638_1704556_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1704662_1704959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1705057_1706008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	2147944	2213493	4106376	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2147944_2148895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2149095_2149905_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2150029_2150980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2150976_2151870_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2151994_2152189_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2152188_2152530_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2152539_2154402_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2154531_2155044_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2155046_2155370_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2155371_2155782_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2155819_2157031_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2157048_2157561_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2157776_2158268_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2158520_2160557_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2160634_2161837_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2161965_2162616_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010929591.1|2164173_2165124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2165694_2165907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165924_2166656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2166690_2167332_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2167324_2167993_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2170205_2170982_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2171003_2172161_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2172157_2172589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2172585_2173383_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2173402_2173804_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2173870_2174842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174907_2176131_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2176358_2177309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2177432_2179886_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2180074_2181379_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2181483_2182137_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2182139_2183450_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2183628_2184207_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2184318_2184519_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2184864_2185431_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2185514_2185718_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2186024_2186345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2186386_2186668_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2186742_2187999_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2188381_2188711_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2190281_2191103_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2191102_2192242_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2192248_2193145_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2193159_2195067_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2195426_2198039_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2198091_2200392_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2200388_2201597_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2201858_2202233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2202229_2203180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2203278_2205273_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2205332_2206298_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2206287_2209149_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2209151_2209658_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2209762_2210971_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210972_2211911_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2212072_2212546_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2212542_2213493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	2606600	2673100	4106376	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606600_2607551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607920_2608493_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608495_2609506_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609498_2609999_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610009_2610351_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2610419_2611154_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611170_2611440_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611462_2612251_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612297_2613314_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613530_2614973_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615151_2616771_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616891_2618712_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618790_2620323_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2620356_2622003_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622072_2623095_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623112_2624246_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624248_2624938_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624937_2625723_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625766_2626531_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626569_2627991_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628056_2628761_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628808_2629228_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629240_2629648_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629831_2630542_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630668_2630959_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2630976_2631459_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635964_2637119_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637424_2638441_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638687_2639476_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077069225.1|2639542_2640223_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640219_2640990_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641088_2642039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642094_2643012_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643022_2644201_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644220_2645216_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646804_2647413_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647400_2648441_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648458_2649421_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649417_2650611_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650607_2651405_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651430_2652417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652435_2654475_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2654676_2655357_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655370_2656282_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656278_2656857_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2656995_2657901_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657908_2661328_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661315_2663916_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664871_2665504_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665897_2666656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2666652_2667855_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668042_2668993_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669900_2671046_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671032_2671788_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671904_2672084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672149_2673100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	2835665	2901248	4106376	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2835665_2836616_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2836714_2837665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2837867_2838857_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2838940_2839294_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2839371_2839980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2841653_2842232_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2842256_2843210_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2843249_2844167_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2844288_2845215_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2845222_2845969_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2846295_2847237_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2847463_2849161_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2849595_2851017_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2851170_2851950_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2852074_2852953_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2853058_2854183_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2854228_2855191_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2855183_2856038_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2856145_2856556_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2856552_2857503_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857601_2858483_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858560_2859940_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2859978_2860824_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860839_2861154_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861186_2861723_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861895_2862471_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862573_2863311_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863378_2865016_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865123_2865879_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865866_2866829_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866936_2867731_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867792_2869868_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870032_2872408_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872488_2873844_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875322_2876045_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876099_2877083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877212_2878163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878159_2879062_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879149_2879908_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879920_2881012_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881109_2882537_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882766_2883981_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884026_2886897_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889307_2889796_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889921_2892618_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892772_2895055_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895218_2895851_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895949_2896900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896946_2897501_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897568_2898414_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898483_2899452_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899451_2901248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	2918819	2974978	4106376	holin,tRNA,transposase	Catovirus(22.22%)	48	NA	NA
WP_010930190.1|2918819_2920340_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920382_2920685_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920681_2921314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921392_2923258_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923254_2924049_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924077_2925193_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926097_2926976_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926975_2927800_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927967_2928918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929130_2931980_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931961_2932690_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932830_2934294_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934290_2934662_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934679_2935993_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936029_2936488_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936600_2937551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937547_2938561_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938700_2939687_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940045_2940753_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941333_2942284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942435_2943038_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943056_2943689_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943733_2943985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943926_2945813_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945831_2946674_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946670_2948029_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948249_2949044_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949274_2950768_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951003_2953085_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953279_2954320_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954454_2955471_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955492_2956350_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956394_2957171_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2957383_2957521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2957538_2958489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958515_2958980_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960186_2962475_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962591_2963464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963506_2964661_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964695_2965526_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965609_2967154_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967196_2967556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967557_2967971_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968011_2968329_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968413_2969130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969393_2970815_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970881_2973629_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2973961_2974978_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	2983600	3056117	4106376	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2983600_2984617_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985554_2986982_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_077069226.1|2986978_2988001_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2987990_2988464_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988604_2989492_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989488_2991132_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991128_2992136_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992966_2993983_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994082_2994715_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994723_2995113_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995165_2996218_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997081_2998788_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998861_2999362_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999376_3001434_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001460_3001754_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001855_3002803_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002815_3003691_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003811_3004372_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004406_3004730_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005165_3005903_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006201_3007152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007395_3007659_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3007732_3008014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3008030_3008891_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3008887_3009223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009276_3009927_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3011607_3012552_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3012597_3012915_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3012917_3013856_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3014033_3014519_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3014537_3015086_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3015117_3015270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3016599_3017241_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3017395_3019744_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3019740_3020679_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3020704_3021895_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3021891_3022665_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3022694_3023888_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3024005_3025016_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3025033_3027070_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3027264_3028005_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3028103_3029054_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029096_3030272_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030493_3032284_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032296_3033958_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033970_3036676_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036968_3038723_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038719_3039346_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039342_3040194_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040323_3042384_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042570_3043185_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043330_3043582_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043651_3045034_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045030_3048210_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049017_3049935_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3049986_3050718_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050777_3051350_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052858_3053875_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054012_3055062_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055166_3056117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	3075517	3140457	4106376	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3075517_3076468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076566_3077151_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077185_3078175_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078171_3079113_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079109_3080330_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080372_3080687_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080878_3081238_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081239_3082955_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083142_3083814_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083828_3085157_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085153_3086053_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086139_3087225_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087217_3088348_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088350_3091032_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091402_3091984_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092109_3092835_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092831_3093509_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093724_3094906_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095678_3095861_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095890_3096841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096970_3097363_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097639_3098551_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098675_3099650_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099646_3100597_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3100695_3101781_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3101878_3102289_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3102904_3104818_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3104953_3107566_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3107567_3108302_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3108465_3109647_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3109643_3109856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3109852_3110833_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3110878_3111706_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3111855_3113670_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3113724_3114108_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3114104_3115055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115167_3115419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3115612_3115828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115924_3117043_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117162_3117375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117534_3117756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117808_3118759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119935_3121306_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121338_3122130_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122142_3123198_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123223_3124099_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124204_3124453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124487_3125942_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125938_3126460_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126488_3127841_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128064_3130953_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133097_3134399_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3134413_3135130_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135411_3136092_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3136619_3137279_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137677_3139510_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139506_3140457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	3232080	3296181	4106376	transposase	Klosneuvirus(16.67%)	51	NA	NA
WP_041337087.1|3232080_3233031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233027_3234047_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234056_3236765_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236912_3237569_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237667_3238618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238765_3239659_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239858_3241553_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241587_3242514_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242582_3243680_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243698_3244562_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244573_3245356_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245352_3246471_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246467_3248000_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248040_3249048_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249192_3249915_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249930_3250953_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251269_3252004_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252088_3253834_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253830_3254583_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254627_3255584_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255672_3256239_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256246_3257107_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257136_3257865_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257896_3258580_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259417_3260332_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3260396_3261347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929999.1|3261445_3262354_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262444_3263869_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263870_3265193_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265189_3267328_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267405_3272526_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272626_3272935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273004_3273562_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273577_3275059_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275113_3276967_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277229_3278567_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278601_3280599_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280616_3282665_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282795_3283662_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283930_3284896_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285010_3286159_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286583_3286895_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286928_3287189_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287338_3288472_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288542_3289679_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289844_3290639_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290701_3291145_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291260_3292211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3292333_3292741_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292813_3295009_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295230_3296181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	3317578	3417691	4106376	tRNA,protease,tail,terminase,transposase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3317578_3318529_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319260_3319638_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319622_3320324_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320467_3321160_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321159_3322263_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322372_3324745_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324741_3326301_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326325_3327123_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327154_3328300_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328404_3329847_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329849_3331079_-	spore maturation protein	NA	NA	NA	NA	NA
WP_010929584.1|3333216_3334167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335296_3335854_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335829_3336180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336348_3337143_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337139_3338189_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338188_3338878_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338964_3339462_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339493_3340810_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340826_3341801_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341837_3342296_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342295_3342976_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3342978_3343407_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343459_3345190_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345255_3345828_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345808_3346495_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346850_3347522_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347850_3348072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348071_3348353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348349_3348865_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348864_3349416_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349394_3349637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349641_3350454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350453_3350717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350757_3350955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350935_3351352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351356_3355313_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355305_3355695_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355691_3356225_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356292_3356652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356661_3359274_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359299_3359590_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359607_3359937_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359946_3360465_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360719_3361220_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361227_3361650_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361646_3362045_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362041_3362437_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3362436_3362625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362638_3363121_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363183_3363435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364109_3365060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365488_3366091_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366213_3366456_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366461_3367517_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367545_3368964_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368966_3370244_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370230_3370716_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371355_3372306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3372562_3373252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373244_3373496_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3374050_3374662_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374733_3374940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375191_3376142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376240_3377314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377481_3378276_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378315_3378840_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378832_3380575_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380784_3381543_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381545_3382253_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382269_3383151_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383161_3383920_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383888_3384644_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384713_3386132_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386153_3386804_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386937_3387273_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387361_3388312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388388_3390209_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390213_3391287_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391409_3392378_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392451_3393363_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393381_3393954_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394034_3394583_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394582_3396172_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396241_3396481_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396521_3397547_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397612_3398794_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398890_3399343_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399352_3400693_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3401009_3402047_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402428_3402788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402871_3403813_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403887_3404838_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405131_3406226_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3406316_3407189_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407210_3408050_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408125_3409643_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409739_3410840_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410856_3411279_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3411301_3411514_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411560_3412481_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412663_3413413_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413415_3413745_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3414032_3415385_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3415396_3415780_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415841_3416642_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416740_3417691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013874	Bordetella pertussis strain G085 chromosome, complete genome	4106376	4005444	4070356	4106376	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005444_4005930_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006018_4006156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006148_4007129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007395_4008205_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008244_4008925_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008918_4009377_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009388_4009751_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009833_4010517_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010572_4010881_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010899_4011214_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011210_4013685_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013692_4015084_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015080_4015266_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015244_4015946_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015942_4016764_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016744_4017869_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017861_4018881_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019086_4019977_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020221_4021013_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021095_4021470_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021447_4022857_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022849_4024232_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024566_4026171_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026248_4027220_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027230_4028157_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028547_4029498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029667_4030894_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031093_4031960_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031952_4032915_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033015_4033966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034064_4035015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035113_4036064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036060_4037554_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037550_4040658_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040654_4043723_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043719_4044970_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045150_4045903_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045944_4046589_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046597_4047578_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047677_4048421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048503_4048851_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048948_4049791_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049835_4050723_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050749_4050938_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051035_4052493_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052479_4054006_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054024_4054492_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054491_4055514_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055634_4056375_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056429_4057530_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057531_4058722_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058841_4059858_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060176_4060848_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060844_4061753_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061964_4062612_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066472_4067540_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067550_4068360_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068449_4069223_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069405_4070356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
