The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	0	63965	4090785	transposase,tRNA	Natrialba_phage(11.11%)	57	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815027.1|59597_60560_-	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010931663.1|60552_61419_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_010931662.1|61618_62845_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931661.1|63014_63965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	248776	323120	4090785	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|248776_249727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|249723_250914_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|251035_251800_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|251886_252990_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|253181_254198_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|254479_254968_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|256311_256992_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|257053_257905_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|257901_258699_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|258802_259696_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|259707_261597_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|261933_265707_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|265703_266654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268689.1|266671_266848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853374.1|266808_266949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|266962_267655_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|268028_268529_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|268635_269556_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|269572_270049_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|270142_271993_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|272048_272807_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|272834_274268_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|274341_275121_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|275133_275967_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|275975_276746_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|276745_277810_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|277961_280589_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|280652_283274_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|284201_284660_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|284938_287182_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|287378_289403_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|289526_290489_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|290700_291840_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|291862_292828_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|293023_294214_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|294227_294473_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|294501_296523_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|296569_298177_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|298277_299447_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|302328_303279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|303302_304361_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|304435_304810_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|305364_306315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|307871_308717_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|308804_309968_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|310386_311358_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|311396_312824_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|312943_313735_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|313853_316307_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|316401_317511_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|317513_318923_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|319328_319463_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|319558_319930_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|319926_320199_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|320247_321939_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|322169_323120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	627403	688593	4090785	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|627403_628354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|628829_629720_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|629716_630538_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|630736_631228_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|631246_632320_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|632366_633470_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|633545_634166_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|634186_634696_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|634750_635002_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|635065_636199_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|636206_636593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|636589_639109_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|639537_639876_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|639872_640379_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|640440_641241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|641351_642293_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|642386_643922_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|645601_647452_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|647455_648289_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|648288_649230_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|649481_650453_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|650594_652883_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|653189_654098_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|654152_655118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_077123565.1|655192_656854_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|656925_657636_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|657602_657767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|657784_658735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|659433_659817_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|659874_660477_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|660494_660896_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|661011_661923_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|661919_662501_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|663295_664030_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|664070_665120_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|665267_665846_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|666232_667210_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|667303_671698_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|671898_672747_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|672905_673718_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|673773_674724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|674822_675623_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|675684_676068_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|676079_677432_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|677719_678049_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|678051_678801_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|678983_679904_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|679950_680163_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|680185_680608_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|680624_681725_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|681821_683339_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|683414_684254_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|684275_685148_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|685238_686333_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|686626_687577_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|687651_688593_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	693917	740108	4090785	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|693917_694943_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|694983_695223_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|695292_696882_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|696881_697430_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|697510_698083_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|698101_699013_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|699086_700055_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|700177_701251_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|701255_703076_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|703152_704103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|704191_704527_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|704660_705311_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|705332_706751_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|706820_707576_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|707544_708303_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|708313_709195_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|709211_709919_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|709921_710680_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|710889_712632_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|712624_713149_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|713188_713983_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|714150_715224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931532.1|715322_716273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|716524_716731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|716802_717414_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|717968_718220_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|718212_718902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|718919_719141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|719158_720109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|720748_721234_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|721220_722498_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|722500_723919_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|723947_725003_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|725008_725251_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|725373_725976_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|726404_727355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|728029_728281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|728343_728826_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|728839_729028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|729027_729423_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|729419_729818_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|729814_730237_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|730244_730745_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|730999_731518_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|731527_731857_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|731874_732165_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|732190_734803_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|734812_735172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|735239_735773_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|735769_736159_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|736151_740108_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 6
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	746274	800204	4090785	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|746274_748005_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|748057_748486_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|748488_749169_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|749168_749627_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|749663_750638_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|750654_751971_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|752002_752500_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|752586_753276_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|753275_754325_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|754321_755116_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|755284_755635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|755610_756168_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|757297_758248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|760385_761615_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|761617_763060_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|763164_764310_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|764341_765139_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|765163_766723_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|766719_769092_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|769201_770305_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|770304_770997_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|771140_771842_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|771826_772204_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|772935_773886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|774045_774918_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|775258_775477_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|775516_776896_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|776937_778335_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|778374_780027_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|780030_780915_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|780914_781856_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|781934_783554_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|783720_784536_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|784603_785173_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|785173_786124_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|786778_787876_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|787909_789175_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|789332_790283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|790526_791117_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|791132_793577_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|793696_794668_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|794799_795324_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|795283_796234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|796455_798651_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|798723_799131_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|799253_800204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	922793	990769	4090785	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|922793_923810_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|924006_924990_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|926588_927977_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|928007_928997_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|929107_930340_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|930621_931422_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|931444_933676_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|934463_934910_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|934931_935678_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|935821_936799_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|937432_938044_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|938037_939255_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|939395_940346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|940342_941062_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|941182_943342_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|943432_943702_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|943790_943997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|943995_944523_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|944541_945321_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|945488_946505_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|946577_947069_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|947079_948795_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|949958_950909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|950905_952738_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|953136_953796_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|954323_955004_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|955285_956002_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|956016_957318_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|959462_962351_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|962574_963927_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|963955_964477_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|964473_965928_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|965962_966211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|966316_967192_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|967217_968273_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|968285_969077_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|969109_970480_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|971656_972607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|972659_972881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|973040_973253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|973372_974491_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|974587_974803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|974996_975248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|975360_976311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|976307_976691_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|976745_978560_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|978709_979537_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|979582_980563_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|980559_980772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|980768_981950_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|982113_982848_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|982849_985462_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|985597_987511_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|988126_988537_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|988634_989720_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|989818_990769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	1034298	1106803	4090785	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|1034298_1035249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1035353_1036403_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1036540_1037557_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1039065_1039638_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1039697_1040429_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1040480_1041398_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1042205_1045385_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_077123566.1|1045381_1046752_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1046821_1047073_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1047218_1047833_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1048019_1050080_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1050209_1051061_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1051057_1051684_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1051680_1053435_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1053727_1056433_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1056445_1058107_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1058119_1059910_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1060131_1061307_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1061349_1062300_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1062398_1063139_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1063333_1065370_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1065387_1066398_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1066515_1067709_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1067738_1068512_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1068508_1069699_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1069724_1070663_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1070659_1073008_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1073162_1073804_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1075133_1075286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1075317_1075866_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1075884_1076370_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1076547_1077486_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1077488_1077806_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1077851_1078796_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1080476_1081127_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1081180_1081516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1081512_1082373_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1082389_1082671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1082744_1083008_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1083251_1084202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1084500_1085238_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1085673_1085997_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1086031_1086592_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1086712_1087588_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1087600_1088548_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1088649_1088943_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1088969_1091027_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1091041_1091542_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1091615_1093322_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1094185_1095238_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1095290_1095680_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1095688_1096321_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1096420_1097437_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1098267_1099275_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1099271_1100915_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1100911_1101799_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1101939_1102413_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1102402_1103425_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1103421_1104849_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1105786_1106803_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	1110556	1171583	4090785	transposase,tRNA,holin	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1110556_1111693_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1111689_1112763_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1112920_1114357_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1114447_1115089_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929632.1|1115424_1116441_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1116773_1119521_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1119587_1121009_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1121272_1121989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1122073_1122391_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1122431_1122845_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1122846_1123206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1123248_1124793_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1124876_1125707_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1125741_1126896_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1126938_1127811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1127927_1130216_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1131422_1131887_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1131913_1132864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1132881_1133019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1133231_1134008_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1134052_1134910_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1134931_1135948_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1136082_1137123_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1137317_1139399_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1139634_1141128_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1141358_1142153_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1142373_1143732_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1143728_1144571_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1144589_1146476_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1146417_1146669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1146713_1147346_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1147364_1147967_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1148118_1149069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1149649_1150357_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1150715_1151702_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1151841_1152855_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1152851_1153802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1153819_1153960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1153914_1154373_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1154409_1155723_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1155740_1156112_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1156108_1157572_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1157712_1158441_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1158422_1161272_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1161484_1162435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1162602_1163427_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1163426_1164305_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1165209_1166325_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1166353_1167148_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1167144_1169010_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1169088_1169721_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1169717_1170020_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1170062_1171583_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	1189154	1254738	4090785	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1189154_1190951_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1190950_1191919_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1191988_1192834_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1192901_1193456_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1193502_1194453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1194551_1195184_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1195348_1197631_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1197785_1200482_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1200607_1201096_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1203506_1206377_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1206422_1207637_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1207866_1209294_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1209391_1210483_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1210495_1211254_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1211341_1212244_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1212240_1213191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1213320_1214304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1214358_1215081_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1216559_1217915_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1217995_1220371_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1220535_1222611_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1222672_1223467_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1223574_1224537_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1224524_1225280_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1225387_1227025_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1227092_1227830_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1227932_1228508_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1228680_1229217_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1229249_1229564_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1229579_1230425_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1230463_1231843_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1231920_1232802_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1232900_1233851_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1233847_1234258_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1234365_1235220_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1235212_1236175_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1236220_1237345_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1237450_1238329_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1238453_1239233_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1239386_1240808_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1241242_1242940_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1243166_1244108_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1244434_1245181_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1245188_1246115_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1246236_1247154_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1247193_1248147_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1248171_1248750_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1250423_1251032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1251109_1251463_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1251546_1252536_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1252532_1252721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1252738_1253689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1253787_1254738_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	1353874	1422361	4090785	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1353874_1354825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1355593_1356232_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1357121_1357568_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1357649_1358351_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1358351_1359119_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1359115_1360354_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1360353_1361280_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1361382_1362498_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1362513_1363464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1363817_1364399_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1364395_1365229_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1365439_1366753_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1366929_1367811_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1367830_1368682_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1368734_1369823_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1369933_1371061_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1371295_1371907_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1372005_1372956_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1373177_1373555_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1373702_1374200_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1374196_1374724_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1374857_1375673_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1375685_1376867_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1376914_1377808_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1377934_1378405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1378530_1379358_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1379386_1380163_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1380159_1380435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1380449_1380914_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1380925_1381627_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1381736_1382237_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1382319_1383498_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1385125_1385461_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1385648_1387097_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1387154_1387499_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1387605_1388145_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1388237_1389188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1389205_1389445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1389926_1390358_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1390539_1390944_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1392180_1392504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1392506_1393394_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1393426_1393852_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1393923_1394277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1394516_1395023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1395061_1396393_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1396452_1397268_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1397264_1398119_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1401181_1403725_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1405091_1406846_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1406842_1408963_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1408967_1411163_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1411159_1414501_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1417303_1418254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1418319_1418499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1418615_1419371_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1419357_1420503_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1421410_1422361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	1482852	1538340	4090785	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1482852_1483803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1485004_1485451_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1485443_1486919_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1486915_1487671_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1487663_1488674_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1488663_1490340_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1490652_1490985_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1490998_1491394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1491403_1491730_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1491726_1492053_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1491979_1493002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1492998_1493349_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1493396_1493825_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1493832_1495206_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1495346_1495724_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1495986_1497294_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1497354_1498185_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1498181_1498670_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1498711_1500232_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1500275_1500752_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1501555_1504153_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1504182_1505004_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1505730_1506480_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1506663_1507542_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1507639_1508356_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1508370_1508931_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1509097_1509862_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1509881_1510739_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1510735_1511935_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1511974_1513309_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1513361_1515698_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1515823_1516387_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1516395_1517487_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1517558_1518014_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1518014_1518809_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1518805_1519987_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1519973_1520579_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1520575_1521349_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1521360_1522188_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1522349_1524713_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1524780_1525500_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1525623_1526049_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1526083_1527034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1527151_1528078_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1528143_1529301_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1529281_1529749_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1529896_1530847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1530863_1531298_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1531287_1531638_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1531834_1532989_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1532985_1534158_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1534205_1535099_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1535144_1535582_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1535641_1536331_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1536340_1537291_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1537389_1538340_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	1633037	1701123	4090785	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1633037_1633526_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1633643_1634222_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1634327_1634696_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1634794_1635745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1635751_1636864_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1637550_1638753_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1638956_1641617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1641629_1645034_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1645701_1647927_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1647973_1648300_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1648350_1648959_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1649057_1650008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1650077_1650842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1650838_1651375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1651541_1652393_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1652452_1653079_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1653075_1654026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1654124_1655237_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1655226_1656228_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1656333_1657845_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1657841_1659146_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1659257_1659818_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1660085_1660640_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1661095_1661311_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1661565_1664163_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1664159_1665347_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1666005_1666620_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1666708_1667830_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1667847_1668753_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010929577.1|1669645_1670596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1670777_1671530_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1671598_1672258_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1672254_1672983_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1672995_1675275_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1675299_1675503_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1675544_1676177_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1676312_1677230_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1677226_1677940_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1678177_1678948_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1678952_1679552_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1679796_1681287_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1681345_1681630_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1682195_1683122_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1683258_1683999_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1684165_1685542_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1685723_1686629_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1688280_1690083_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1690200_1690851_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1690949_1691900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1691921_1693142_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1693327_1694740_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1694803_1695871_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1695870_1697358_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1697367_1698312_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1698471_1699170_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1699247_1700153_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1700172_1701123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	1737072	1792663	4090785	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1737072_1738023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1738081_1738855_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1738847_1740404_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1740400_1741351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1742677_1743280_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1743519_1744221_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1744214_1744997_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1745181_1746132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1746230_1746968_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1747157_1747916_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1747962_1748952_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1749129_1750098_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1751637_1752606_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1752614_1753556_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1754029_1755040_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1755030_1756545_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1756541_1757888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1757890_1758925_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1758974_1760600_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1761152_1762103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1762207_1763155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1763208_1765023_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1765015_1765690_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1765819_1768894_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1768907_1769207_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1769521_1770145_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1770388_1771258_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1771235_1772180_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1772265_1773192_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1773304_1774084_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1774074_1775271_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1775301_1776252_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1776473_1777163_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1777227_1777983_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1778034_1779027_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1779036_1779990_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1780105_1781068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1782469_1782898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1782894_1783845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1784138_1784861_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1785299_1786487_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1786490_1786841_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1788590_1789562_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1789575_1790289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1790293_1791211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1791317_1791614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1791712_1792663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2025427	2095079	4090785	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|2025427_2028085_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2028162_2029365_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2029361_2029874_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2029996_2030434_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2030710_2031661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|2031759_2032710_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2032873_2034769_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2034882_2035050_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2035113_2035350_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2035718_2036870_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2038433_2039384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2039835_2040837_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2041009_2041867_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2041863_2043126_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2043226_2043601_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2043673_2044861_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2044945_2045716_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2045829_2046594_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2046544_2047846_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2047842_2048649_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2050393_2051365_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2051521_2052034_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2052192_2053167_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2054167_2054962_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2054987_2055794_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2055904_2056495_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2056505_2057684_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2057786_2058161_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2058413_2059745_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2059811_2063042_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2064532_2065279_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2065363_2065825_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2065862_2066921_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2066883_2068713_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2068752_2069325_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2070749_2071571_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2071889_2073212_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2073571_2074207_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2074166_2075117_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2075987_2076860_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2076937_2078077_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2078435_2079692_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2079697_2080225_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2080229_2081048_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2081047_2081770_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2081791_2082106_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2082123_2083272_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2083302_2084178_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2084174_2085494_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2085566_2086763_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2086773_2088261_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2090855_2091755_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2091892_2092858_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2092956_2093907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2094128_2095079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2106575	2155971	4090785	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2106575_2107526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2108663_2108960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2109134_2110487_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2110629_2111646_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2113625_2114639_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2114725_2115631_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2115787_2116132_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2116289_2116748_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2116761_2118978_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2118974_2120036_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2120064_2121039_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2120990_2121809_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2121821_2122430_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2122604_2123000_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2123018_2124458_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2124486_2124834_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2124852_2125803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2126455_2127406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2127489_2129307_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2129380_2130028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2130040_2130970_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2131139_2131604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2131851_2132532_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2132580_2134272_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2134287_2134839_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2134835_2135207_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2135319_2136156_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2136166_2136691_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2136788_2136968_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2137097_2138072_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2138202_2138559_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2138548_2139424_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2139522_2140407_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2140428_2141724_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2142672_2143323_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2143410_2144931_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2145188_2147054_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2148099_2149050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2149067_2149208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2150022_2150382_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2150369_2151806_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2151802_2152456_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2152452_2153646_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2153749_2155024_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2155020_2155971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2167175	2207866	4090785	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2167175_2168126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2168224_2169175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2169134_2169548_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2169832_2170132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2170541_2172824_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2173509_2175540_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2175559_2175772_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2176049_2176589_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2176702_2177998_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2178074_2179232_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2179415_2180315_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2180333_2181638_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2181603_2182710_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2182797_2183034_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2183172_2184243_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2184246_2185602_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2185628_2186786_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2186791_2187430_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2187431_2188727_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2188776_2190063_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2190078_2190585_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2190581_2191730_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2191757_2192183_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2192505_2195388_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2195480_2196236_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2197001_2198351_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2198449_2199400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2199498_2200449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2200522_2200996_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2201021_2202230_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2202226_2203000_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2202999_2203623_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2203788_2204049_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2204352_2204934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2205000_2205255_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2205241_2207866_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2235649	2301198	4090785	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2235649_2236600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2236800_2237610_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2237734_2238685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2238681_2239575_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2239699_2239894_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2239893_2240235_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2240244_2242107_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2242236_2242749_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2242751_2243075_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2243076_2243487_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2243524_2244736_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2244753_2245266_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2245481_2245973_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2246225_2248262_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2248339_2249542_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2249670_2250321_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2251878_2252829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2253399_2253612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2253629_2254361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2254395_2255037_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2255029_2255698_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2257910_2258687_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2258708_2259866_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2259862_2260294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2260290_2261088_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2261107_2261509_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2261575_2262547_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2262612_2263836_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2264063_2265014_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2265137_2267591_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2267779_2269084_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2269188_2269842_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2269844_2271155_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2271333_2271912_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2272023_2272224_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2272569_2273136_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2273219_2273423_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2273729_2274050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2274091_2274373_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2274447_2275704_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2276086_2276416_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2277986_2278808_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2278807_2279947_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2279953_2280850_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2280864_2282772_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2283131_2285744_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2285796_2288097_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2288093_2289302_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2289563_2289938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2289934_2290885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2290983_2292978_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2293037_2294003_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2293992_2296854_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2296856_2297363_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2297467_2298676_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2298677_2299616_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2299777_2300251_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2300247_2301198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2570052	2635773	4090785	transposase,protease,tRNA	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2570052_2571996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2571992_2572913_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2572932_2573520_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2573512_2574403_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2574399_2575161_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2575166_2576051_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2576073_2577867_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2577997_2579485_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2579522_2580581_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2580580_2581081_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2581093_2581693_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2581689_2582190_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2582191_2583421_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2583610_2583850_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2584032_2584785_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2584786_2585722_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2585803_2586790_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2586789_2587848_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2587904_2588087_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2588138_2588732_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2588840_2589440_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2589436_2590147_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2590148_2590976_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2592792_2594034_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2594045_2594819_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2594845_2595796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2595894_2596677_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2596765_2597992_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2598717_2600103_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2600121_2600727_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2600723_2602580_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2602576_2603377_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2603391_2604585_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2604652_2605627_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2605749_2606973_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2607083_2609288_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2609582_2610242_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2610249_2610456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2610794_2611550_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2611820_2612336_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2612608_2612926_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2613113_2613350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2613640_2614996_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2615042_2616383_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2616484_2617117_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2617116_2619486_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2619518_2620478_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2620464_2621151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2621147_2621480_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2621595_2622546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2622644_2623595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2623591_2625658_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2625657_2625930_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2626624_2626714_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2626713_2628498_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2628521_2630687_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2630697_2631297_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2634118_2634814_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2634822_2635773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2721890	2762559	4090785	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2721890_2722841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2722951_2723134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2723233_2723830_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2724013_2725105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2725604_2726015_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2726073_2726403_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2726420_2728838_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2728850_2729873_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2729947_2730307_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2730322_2730520_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2730855_2731806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2732000_2732450_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2732446_2733397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2733507_2734956_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2735070_2735316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2735455_2736406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2736650_2737364_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2737486_2737714_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2738008_2738647_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2738755_2739790_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2739786_2740737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2741152_2741677_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2741680_2741950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2742148_2743210_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2743293_2744928_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2744929_2745733_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2745761_2746721_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_077092439.1|2746724_2748239_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2748275_2749280_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2749711_2750182_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2750217_2750829_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2750859_2751483_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2751563_2753096_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2753130_2754348_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2754415_2755447_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2755443_2756613_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2756606_2757287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2757448_2758291_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2758453_2759425_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2759596_2760475_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2760497_2761568_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2761608_2762559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2818024	2890894	4090785	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2818024_2818441_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2818551_2819184_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2819212_2819656_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2819677_2820769_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2820823_2821624_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2821759_2822380_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2822519_2822993_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2824132_2825083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2825079_2832741_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2832981_2837028_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2837340_2837922_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2837918_2839217_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2839296_2840325_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2840585_2841536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2841532_2842483_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2842799_2843405_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2843458_2844772_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2844846_2845317_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2845316_2846105_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2846115_2847768_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2847855_2848806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2849967_2850474_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2850470_2851235_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2851250_2851535_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2851599_2852589_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2852760_2853690_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2853661_2854348_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2854381_2854927_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2854971_2856237_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2856233_2857136_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2858317_2859262_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2859356_2860874_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2860915_2862544_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2862651_2863533_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2866645_2867020_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2867044_2867383_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2867426_2869061_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2869099_2870446_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2870553_2871975_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2872044_2872629_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2872731_2873682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2873816_2874923_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2874933_2876031_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2876175_2877381_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2877387_2877909_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2877905_2878388_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2878393_2878645_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2878625_2879111_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2879246_2882708_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2882725_2883610_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2883619_2884051_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2884297_2884801_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2884878_2886279_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2886353_2887229_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2887225_2888233_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2888700_2889006_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2889096_2889687_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2889877_2890894_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2894037	2960848	4090785	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2894037_2894988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2895086_2896037_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2896033_2896828_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2896859_2897564_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2897638_2898439_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2898435_2898843_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2898839_2899481_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2899473_2901474_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2902734_2904066_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2904062_2905013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2906719_2906986_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2907693_2908032_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2912585_2913188_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2913284_2914574_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2914631_2915363_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2915359_2916163_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2916159_2917248_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2917244_2918174_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2918322_2919468_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2919489_2920440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2920457_2920616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2920770_2924592_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2924748_2925417_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2925421_2927095_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2927113_2928433_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2928437_2930753_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2930808_2932977_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2932973_2938154_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2938252_2938567_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2938794_2939040_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2939134_2939653_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2939752_2940958_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2941073_2942471_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2942587_2943166_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2943238_2944630_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2944797_2945748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2946028_2946649_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2946645_2947059_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2947055_2948099_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2948154_2948343_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2948352_2949117_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2949207_2949864_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2949955_2950714_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2950739_2952341_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2952541_2953546_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2953646_2953910_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2954027_2954804_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2955394_2956345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2958728_2959841_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2959897_2960848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	2991234	3085271	4090785	transposase	Bacillus_virus(30.0%)	90	NA	NA
WP_010929591.1|2991234_2992185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2992202_2992352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2992305_2993202_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2995479_2997705_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2997869_2998958_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2998914_2999568_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2999615_3000413_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3000944_3001895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|3001975_3003124_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3003180_3004131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3004229_3004535_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3004563_3004998_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3004999_3006244_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3006240_3006951_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3006965_3007877_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_155120814.1|3008064_3008229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3008246_3009197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|3009288_3009693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3009689_3010148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|3010154_3011063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|3011059_3011926_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3011912_3012740_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3012750_3013878_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3014955_3016194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3016235_3017498_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3017504_3018257_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3018308_3018494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3018769_3019234_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3019265_3019925_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3020069_3022178_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3022174_3023125_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3023228_3023849_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3023952_3024693_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3025827_3026952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3026997_3027366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3027607_3028558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3029593_3030136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|3030333_3030504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3030521_3031472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3031468_3032377_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3032503_3033340_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3033852_3034962_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3035023_3035974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3036166_3036949_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3036962_3037727_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3037739_3039086_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3039111_3040041_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3040156_3041062_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3041079_3042279_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3042351_3043044_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3043092_3045519_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3045563_3046514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698394.1|3046531_3046678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809026.1|3046730_3047099_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3047385_3048312_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3048355_3049366_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3049362_3049797_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3050922_3051711_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3051720_3052503_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3052506_3053598_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3053703_3055179_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3055320_3055869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3055884_3056346_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3056446_3057436_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3057734_3058436_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3058474_3059848_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3059886_3061173_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3062059_3062962_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3062909_3064130_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3064126_3064636_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3064625_3065321_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3065391_3066261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930208.1|3066610_3067561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|3068421_3069111_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|3069887_3070850_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|3070853_3071714_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|3071707_3072100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486094.1|3074754_3075552_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|3075585_3076365_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486096.1|3076393_3077266_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003818698.1|3077287_3078037_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|3078044_3078902_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|3078942_3079506_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|3079536_3079833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|3079913_3080717_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818702.1|3080737_3081934_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247599.1|3081936_3082938_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|3083290_3083461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|3083555_3084218_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3084320_3085271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	3403462	3457203	4090785	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3403462_3404413_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3404817_3405462_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3405486_3406071_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3406171_3406789_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3406791_3408507_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3408503_3408812_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3408828_3409446_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3409490_3409793_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3409893_3410748_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3410935_3411160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3411329_3411602_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3412019_3412427_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3412796_3413591_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3413691_3414927_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3414995_3416012_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3416023_3417400_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3417396_3418593_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3418589_3420128_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3420124_3421384_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3423324_3424275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3425041_3426136_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3426128_3427463_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3427416_3428100_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3428125_3429289_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3429285_3430287_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3430286_3431159_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3431155_3431905_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3431901_3432693_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3432689_3433829_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3434104_3434890_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3434923_3435706_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3435709_3436099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3437238_3438102_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3438137_3439226_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3439222_3440173_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3440526_3443505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3444431_3445310_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3447258_3448209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3448205_3448673_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3448715_3449486_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3449506_3450307_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3450317_3451727_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3451821_3452607_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3452846_3453863_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3453970_3454363_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3454500_3455181_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3455185_3456157_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3456252_3457203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	3463358	3522658	4090785	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3463358_3465122_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3465233_3466112_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3466224_3467040_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3467043_3467295_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3467379_3468396_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3468726_3468948_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3471308_3472226_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3472723_3473932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3474011_3475583_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3475700_3476636_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3476824_3477769_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3478336_3484054_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3484059_3485187_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3485242_3485869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3486140_3487157_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3487252_3487963_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3487959_3488949_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3489044_3490676_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3490678_3491416_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3491571_3492444_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3492793_3493933_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3493929_3494589_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3494660_3495293_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3495322_3495841_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3495851_3496961_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3497007_3497862_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3497863_3498766_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077092443.1|3499988_3500939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3502695_3503685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3503860_3504649_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3504645_3505677_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3505695_3506259_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3506314_3507835_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3508098_3508803_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3508810_3509539_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3509653_3510028_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3510070_3511360_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3511356_3512526_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3512522_3513362_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3513421_3514357_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3514369_3515320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3515418_3516381_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3516412_3516772_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3516896_3517799_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3517800_3519573_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3519607_3520384_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3521707_3522658_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	3537596	3595669	4090785	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_010929584.1|3537596_3538547_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3538675_3539809_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3539852_3540758_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3540760_3542461_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3542457_3543378_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3543385_3544363_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3544421_3545456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3547430_3547667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3547793_3548657_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3548745_3549567_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3549646_3550384_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3550380_3551373_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3551525_3552149_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3552193_3553342_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3555665_3556616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3556956_3557907_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3558005_3558956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3559252_3559750_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3559792_3561568_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3561575_3562442_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3562448_3563183_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3564352_3565147_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3565436_3566027_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3566060_3567389_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3567463_3568609_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3568720_3569719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3569681_3570116_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3571632_3572517_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3572513_3573719_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3573715_3574576_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3574688_3576479_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3576519_3577164_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3577185_3577494_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3577659_3578946_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3580379_3581330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3583281_3584496_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3584601_3585591_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3585587_3586196_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3586208_3586838_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3586834_3587455_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3587486_3588278_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3589129_3589585_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3589603_3590530_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3590583_3591870_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3592800_3593673_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3593669_3594620_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3594718_3595669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	3605469	3676810	4090785	transposase,tRNA	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
WP_010929957.1|3605469_3606744_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3607466_3608417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3608515_3609466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929955.1|3609564_3611940_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929954.1|3611959_3612796_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929953.1|3612792_3613590_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929952.1|3613586_3615776_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929951.1|3615827_3616814_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929950.1|3616895_3618698_-	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929949.1|3618955_3621073_+	crotonase	NA	NA	NA	NA	NA
WP_010929948.1|3621102_3622287_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929947.1|3622308_3622797_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929946.1|3622946_3624779_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929945.1|3624976_3625957_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929944.1|3626013_3627033_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815697.1|3627096_3627990_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929943.1|3628388_3629168_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929942.1|3629167_3631309_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929941.1|3631456_3632401_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929940.1|3632484_3633468_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003815690.1|3633832_3635107_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929939.1|3635137_3635566_+	RidA family protein	NA	NA	NA	NA	NA
WP_003815682.1|3635576_3636251_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929938.1|3636243_3637416_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_010929937.1|3637548_3638568_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929936.1|3638748_3639939_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|3639952_3641083_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929934.1|3641126_3642848_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_003815672.1|3642966_3643929_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815671.1|3644035_3645007_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247835.1|3645625_3646294_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815668.1|3646290_3646698_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010929577.1|3646694_3647645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3650089_3650824_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3651233_3651413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3651603_3652917_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3652932_3654444_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3654440_3655646_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3655841_3656819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|3656911_3657406_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|3657535_3658594_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|3658590_3660210_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_157734656.1|3660169_3660439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929784.1|3660397_3661501_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|3661497_3661953_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|3661958_3662882_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|3662971_3663631_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|3663627_3664542_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|3664630_3665581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486055.1|3665656_3666637_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|3667097_3667697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807867.1|3667765_3668758_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486054.1|3668807_3670397_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_014486053.1|3670437_3671334_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486052.1|3671330_3673037_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_019247259.1|3673204_3674383_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486051.1|3674379_3675150_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_014486050.1|3675198_3675900_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486049.1|3675826_3676810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	3746632	3798771	4090785	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	50	NA	NA
WP_005013747.1|3746632_3747583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3747705_3748434_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3748530_3749709_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3749705_3750539_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3750575_3751316_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3751435_3752611_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3752607_3753561_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3753574_3753976_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3753968_3754574_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3754661_3754826_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3754942_3755791_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3755787_3756441_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3756457_3757741_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3757980_3759606_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3759699_3760101_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3760125_3760560_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3760561_3762211_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3762251_3763421_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3763423_3764287_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3767650_3768355_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3768348_3769143_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3769139_3770105_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3770108_3771029_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3771125_3772289_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3772511_3773402_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3773405_3773909_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3773951_3774950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3774946_3775897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3775985_3776273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3776464_3777415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3777474_3778035_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3779537_3780419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3780532_3781735_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3781863_3783723_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3783800_3784610_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3784680_3785682_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3785713_3786574_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3786773_3787778_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3787774_3789361_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3789369_3790296_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3790318_3790945_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3791043_3791994_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3791990_3793127_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3793180_3793957_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3793981_3794440_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3794579_3795221_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3795285_3796668_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|3796693_3797542_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3797700_3798312_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3798321_3798771_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
>prophage 30
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	3810394	3871283	4090785	transposase,protease,tRNA	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_005012067.1|3810394_3811345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3812075_3813056_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3813069_3814194_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3814201_3815956_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3816062_3816962_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3817026_3818010_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3818145_3819126_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3819142_3820534_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3820685_3821222_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3821152_3822538_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3822680_3823319_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3823405_3825295_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3825291_3826233_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3826338_3827388_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3827640_3828342_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3828338_3829037_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3829037_3830393_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3830389_3830881_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3830899_3831856_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3833266_3835369_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3835539_3836583_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3836626_3837370_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3838391_3838802_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3839751_3840549_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3840647_3841598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3841594_3842545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3842631_3843582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3843696_3844698_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3844788_3845355_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3845673_3847587_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3847628_3849059_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3849171_3850584_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3850600_3851296_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3851514_3852465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3852489_3853389_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3853543_3854092_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3854130_3854850_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3855020_3857864_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|3858457_3861253_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3861710_3862643_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3862754_3864104_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3864135_3864861_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_033446325.1|3864911_3865694_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3865892_3866579_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3866578_3867223_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3867279_3867555_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3867580_3867877_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3867922_3868702_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3868707_3869748_+	cyclase	NA	NA	NA	NA	NA
WP_010929699.1|3869852_3870176_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3870332_3871283_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	3901666	3969493	4090785	transposase,tRNA	Bacillus_phage(22.22%)	58	NA	NA
WP_010929591.1|3901666_3902617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815898.1|3902823_3903300_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|3903381_3904065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|3904089_3905697_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|3905745_3906375_-	LysE family transporter	NA	NA	NA	NA	NA
WP_010929660.1|3906408_3907839_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_003815889.1|3908121_3908751_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|3908728_3909631_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|3911074_3912025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995348.1|3912583_3914137_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|3914142_3914778_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|3915006_3916029_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|3916194_3916971_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|3917134_3917833_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|3917844_3919155_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|3919210_3919888_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|3919884_3921282_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|3921387_3921849_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_023853237.1|3921953_3923153_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929650.1|3923204_3924080_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|3924181_3924613_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|3924637_3925366_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|3925362_3926343_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|3927109_3927892_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929647.1|3928010_3928982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|3929055_3929814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|3929832_3930276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|3930296_3931109_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|3931114_3932047_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|3932030_3933254_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|3933341_3934124_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|3934176_3938139_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|3938885_3940394_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_005012067.1|3940812_3941763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|3943029_3943908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853394.1|3943935_3944220_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_023853393.1|3944330_3945770_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|3945768_3946416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|3946842_3948543_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|3948633_3949887_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|3950780_3951170_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929637.1|3951166_3952177_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|3953013_3953847_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|3953843_3954749_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|3954847_3955798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|3955898_3956720_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|3956825_3957866_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|3957908_3959201_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|3959211_3960087_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|3960083_3960884_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|3960959_3961976_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|3962258_3962576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|3962666_3963014_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|3963301_3964984_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|3964993_3965677_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|3965738_3966368_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|3966449_3967643_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|3968542_3969493_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013872	Bordetella pertussis strain F778 chromosome, complete genome	4090785	3997316	4054764	4090785	transposase	uncultured_Mediterranean_phage(40.0%)	49	NA	NA
WP_041166334.1|3997316_3998261_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3998335_3999286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|3999282_4000692_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_010929606.1|4000797_4001640_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_003807805.1|4001641_4001893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|4001981_4002563_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|4002594_4003215_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|4003376_4005284_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|4006476_4006791_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|4006884_4007835_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|4008256_4009438_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|4010067_4011339_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|4011373_4012432_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929600.1|4012550_4012853_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|4012865_4013447_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248755.1|4013503_4014478_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929597.1|4014901_4015843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929596.1|4016026_4016446_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|4016445_4017672_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_005012067.1|4018472_4019423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4019521_4020472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4020468_4021962_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4021958_4025066_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4025062_4028131_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4028127_4029378_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4029558_4030311_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4030352_4030997_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4031005_4031986_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4032085_4032829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4032911_4033259_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4033356_4034199_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4034243_4035131_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4035157_4035346_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4035443_4036901_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4036887_4038414_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4038432_4038900_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4038899_4039922_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4040042_4040783_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4040837_4041938_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4041939_4043130_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4043249_4044266_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4044584_4045256_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4045252_4046161_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4046372_4047020_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4050880_4051948_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4051958_4052768_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4052857_4053631_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4053631_4053796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4053813_4054764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
