The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	27282	78584	4104403	tRNA,transposase	Synechococcus_phage(25.0%)	48	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	107426	175252	4104403	tRNA,transposase	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107426_108377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136525_138034_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138780_142743_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142795_143578_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143665_144889_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144872_145805_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145810_146623_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147936_148908_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815135.1|149026_149809_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150575_151556_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151552_152281_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152305_152737_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152838_153714_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153765_154965_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155069_155531_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155636_157034_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157030_157708_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157763_159074_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159085_159784_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159947_160724_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160889_161912_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162140_162776_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929658.1|162772_164335_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	178634	236271	4104403	tRNA,protease,transposase	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225622_226318_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226334_227747_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227859_229290_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229331_231245_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231563_232130_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232220_233222_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	250685	303111	4104403	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_077069064.1|270637_272479_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	22.5	2.8e-06
WP_010929715.1|272475_274155_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274217_274766_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275908_276187_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277230_278181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278458_278620_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278627_278768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279286_279736_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279745_280357_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280515_281370_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281389_282772_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282836_283478_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283617_284076_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284100_284877_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284930_286067_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|286063_287014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287112_287739_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_077069065.1|287761_288688_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288696_290283_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290279_291284_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291483_292344_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292375_293377_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293447_294257_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294334_296194_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296322_297525_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297638_298520_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|300022_300583_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300642_301593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301784_302072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302160_303111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	555399	614699	4104403	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555399_556350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557673_558450_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558484_560257_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560258_561161_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561285_561645_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561676_562639_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562737_563688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563700_564636_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564695_565535_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565531_566701_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566697_567987_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568029_568404_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568509_569247_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569254_569959_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570222_571743_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571798_572362_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572380_573412_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573408_574197_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574217_574376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574372_575362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577118_578069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579291_580194_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580195_581050_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581096_582206_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582216_582735_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582764_583397_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583468_584128_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584124_585345_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585613_586486_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586641_587379_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587381_589013_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589108_590098_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590094_590805_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590900_591917_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592188_592815_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592870_593998_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594003_599721_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600288_601233_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601421_602357_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602474_604046_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604125_605334_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605831_606749_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609109_609331_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609661_610678_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610762_611014_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611017_611833_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611945_612824_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612935_614699_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	620854	674595	4104403	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620854_621805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621900_622872_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622876_623557_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623694_624087_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624194_625211_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625450_626236_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626330_627740_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627750_628551_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628571_629342_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629384_629852_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629848_630799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632747_633626_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634552_637531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637884_638835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638831_639920_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639955_640819_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641958_642348_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642351_643134_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643167_643953_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644228_645368_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645364_646156_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646152_646902_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646898_647771_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647770_648772_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648768_649932_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649957_650641_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650594_651929_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651921_653016_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653782_654733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656673_657933_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657929_659468_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659464_660661_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660657_662034_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|662045_663062_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663130_664366_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664466_665261_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665630_666038_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666455_666728_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666897_667122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667309_668164_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668264_668567_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668611_669229_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669245_669554_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669550_671266_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671268_671886_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671986_672571_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672595_673240_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_010929956.1|673644_674595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	723533	764532	4104403	tRNA,integrase,protease,transposase	Pseudomonas_phage(33.33%)	29	720781:720799	740669:740687
720781:720799	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723533_724130_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724126_724909_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724981_726073_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726352_727480_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727821_728868_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|729015_732135_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732136_735088_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735103_736315_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736498_737449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737465_737960_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737963_738221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738764_739676_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739757_740042_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740825_741776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740669:740687	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742194_744759_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744803_746657_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746989_748561_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750002_750953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751038_751779_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752005_752953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754340_755291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755484_756300_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756432_757872_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757885_758227_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758281_759937_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|760088_761099_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761231_762005_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762532_763483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|763581_764532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	774459	822077	4104403	tRNA,protease,transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|774459_775410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775548_776301_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|776539_778264_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|778283_779543_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779557_780652_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|780648_782775_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|782787_783468_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783745_785119_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785120_786140_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786203_787175_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787239_788190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788288_789131_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789130_789466_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789536_790955_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791234_792275_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792354_792606_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792716_793880_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794163_795018_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|795014_795905_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795947_796859_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796885_797578_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797592_798573_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798585_800727_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800775_801744_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801734_802403_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802363_803299_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803295_804192_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804188_804911_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804901_805066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805239_805743_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|806019_807135_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807277_807742_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807889_808429_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808450_809785_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809798_810104_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810528_811110_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811191_812142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812240_813191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813631_814537_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|814592_816197_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816453_817959_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817973_818438_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818727_819678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|819840_820371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820370_820682_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821126_822077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	997936	1100328	4104403	tRNA,transposase	Bacillus_virus(27.27%)	95	NA	NA
WP_003813026.1|997936_999052_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999152_999971_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1000068_1000680_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000839_1002216_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002278_1002737_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002821_1003517_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1003578_1003860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004422_1005175_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005219_1006296_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006292_1007243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007345_1008008_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008102_1008273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008625_1009627_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009629_1010826_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010846_1011650_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011730_1012027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1012057_1012621_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012661_1013519_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013526_1014276_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014297_1015170_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015198_1015978_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1016011_1016809_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019463_1019856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019849_1020710_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020713_1021676_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022452_1023142_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1024002_1024953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025302_1026172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026242_1026938_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026927_1027437_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027433_1028654_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028601_1029504_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030390_1031677_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031715_1033089_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033127_1033829_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034127_1035117_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035217_1035679_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035694_1036243_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036384_1037860_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037965_1039057_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1039060_1039843_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039852_1040641_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041766_1042201_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042197_1043208_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043251_1044178_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044463_1044832_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1045048_1045999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1046043_1048470_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048518_1049211_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049283_1050483_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050500_1051406_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051521_1052451_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052476_1053823_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053850_1054600_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054613_1055396_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055588_1056539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056600_1057710_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058222_1059059_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059128_1060094_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060090_1061041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1061058_1061229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061426_1061969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1063004_1063955_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064196_1064565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064610_1065735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066869_1067622_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067713_1068334_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068437_1069388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069384_1071493_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071637_1072297_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072328_1072793_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1073068_1073254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073305_1074058_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1074064_1075327_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075368_1076607_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077684_1078812_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078822_1079650_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079636_1080503_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081869_1082274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082365_1083316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1083333_1083498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1083685_1084597_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084611_1085322_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085318_1086563_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086564_1086999_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1087027_1087333_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087431_1088382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088438_1089593_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089667_1090618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091149_1091947_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091994_1092648_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092604_1093693_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093857_1096083_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098360_1099257_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099377_1100328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	1130714	1201685	4104403	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130714_1131665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131721_1132834_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135217_1136168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136758_1137535_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137652_1137916_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1138016_1139021_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139221_1140823_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140848_1141607_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141698_1142355_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142445_1143210_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143219_1143408_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143463_1144507_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144503_1144917_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144913_1145534_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145814_1146765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146932_1148324_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148396_1148975_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149091_1150489_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150604_1151810_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151909_1152428_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152522_1152768_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152995_1153310_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153399_1158589_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158585_1160754_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160809_1163125_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163129_1164449_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164467_1166141_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166145_1166814_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166970_1170792_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171122_1172073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172094_1173240_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173388_1174318_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174314_1175403_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175399_1176203_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176199_1176931_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176988_1178278_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178374_1178977_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183530_1183869_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184576_1184843_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186549_1187500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187496_1188828_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190088_1192089_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1192081_1192723_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192719_1193127_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193123_1193924_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193998_1194703_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194734_1195529_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195525_1196476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196574_1197525_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197623_1198058_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198140_1200477_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200668_1201685_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	1249079	1329954	4104403	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1249079_1250030_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1250026_1250977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251237_1252266_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252345_1253644_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253640_1254222_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254534_1258581_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258821_1266483_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266479_1267430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268569_1269043_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269182_1269803_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1269938_1270739_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270793_1271885_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271906_1272350_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272378_1273011_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273121_1273538_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273530_1274223_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274329_1274704_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274780_1275590_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275685_1276630_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276668_1277640_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277730_1278168_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278226_1279108_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280111_1280972_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1281004_1282387_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282383_1283403_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283775_1284270_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284277_1285018_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285098_1286703_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286742_1287531_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288733_1289822_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290702_1291515_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291527_1291836_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291953_1293684_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293685_1294831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1294960_1295629_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295750_1296218_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296353_1297736_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297732_1298857_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298853_1301490_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301905_1302856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306602_1307214_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307436_1308897_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308993_1310586_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310939_1311197_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311198_1312539_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312634_1313324_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313336_1314767_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316491_1317313_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317323_1318895_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318923_1319901_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319927_1320731_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320727_1321522_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321529_1322765_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322757_1323192_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323941_1324892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325513_1327241_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327352_1328711_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1329003_1329954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	1449349	1501512	4104403	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1449349_1450300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450466_1450820_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450832_1451195_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451236_1451662_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451864_1453121_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453319_1454300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454449_1455691_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455789_1456740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456748_1457444_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460265_1460865_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460875_1463041_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1463064_1464849_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464848_1464938_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465632_1465905_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465904_1467971_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467967_1468918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1469016_1469967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1470082_1470415_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470411_1471098_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1471084_1472044_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1472085_1474446_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474445_1475078_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475179_1476520_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476566_1477922_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1478047_1478692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478636_1478954_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479226_1479742_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1479835_1479997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1480012_1480768_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481106_1481313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481320_1481980_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482274_1484479_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484589_1485813_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485935_1486910_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486977_1488171_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488185_1488986_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488982_1490839_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490835_1491441_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491459_1492845_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493570_1494797_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1494885_1495668_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495766_1496717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496743_1497517_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497528_1498770_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500561_1501512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	1545437	1613523	4104403	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1545437_1545926_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1546043_1546622_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546727_1547096_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1547194_1548145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548151_1549264_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549950_1551153_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1551188_1551335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1551356_1554017_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1554029_1557434_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558101_1560327_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560373_1560700_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560750_1561359_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561457_1562408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562477_1563242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1563238_1563838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1563941_1564793_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564852_1565479_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565475_1566426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566524_1567637_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567626_1568628_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568733_1570245_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570241_1571546_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571657_1572218_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572485_1573040_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573495_1573711_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573965_1576563_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576559_1577747_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1578405_1579020_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1579108_1580236_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580247_1581153_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1582045_1582996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583177_1583930_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583998_1584658_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584654_1585383_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585395_1587675_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587699_1587903_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587944_1588577_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588712_1589630_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589626_1590340_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590577_1591348_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591352_1591952_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592196_1593687_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593745_1594030_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1594167_1594323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594595_1595522_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595658_1596399_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596565_1597942_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598123_1599029_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600680_1602483_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1602609_1603251_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603349_1604300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604321_1605542_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605727_1607140_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607203_1608271_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1608270_1609758_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609767_1610712_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610871_1611570_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611647_1612553_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612572_1613523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	1649472	1705063	4104403	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649472_1650423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650481_1651255_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651247_1652804_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652800_1653751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1655077_1655680_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655919_1656621_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656614_1657397_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657581_1658532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658630_1659368_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659557_1660316_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660362_1661352_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661529_1662498_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664037_1665006_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665014_1665956_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666429_1667440_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667430_1668945_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668941_1670288_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1670290_1671325_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671374_1673000_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673552_1674503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674607_1675555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675608_1677423_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677415_1678090_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678219_1681294_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681307_1681607_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681921_1682545_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1682788_1683658_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683635_1684580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684665_1685592_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685704_1686484_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686474_1687671_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687701_1688652_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688873_1689563_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689627_1690383_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690434_1691427_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691436_1692390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692505_1693468_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694869_1695298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695294_1696245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1696538_1697276_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697699_1698887_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698890_1699271_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700990_1701962_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701975_1702689_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702693_1703611_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703717_1704014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704112_1705063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	1937827	2007479	4104403	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937827_1940485_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940562_1941765_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941761_1942274_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942396_1942834_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943110_1944061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944159_1945110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1945363_1947169_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1947282_1947450_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947513_1947750_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1948118_1949318_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950833_1951784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952235_1953237_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953409_1954267_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954263_1955526_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955626_1956001_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1956073_1957261_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957345_1958116_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958229_1958994_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958944_1960246_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1960242_1961049_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1962793_1963765_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963921_1964434_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964592_1965567_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966567_1967362_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967387_1968194_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968304_1968895_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968905_1970084_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970186_1970561_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970813_1972145_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972211_1975442_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976932_1977679_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977763_1978225_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978262_1979321_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979283_1981113_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981152_1981725_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983149_1983971_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984289_1985612_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985971_1986607_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986566_1987517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988387_1989260_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989337_1990477_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990835_1992092_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1992097_1992625_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992629_1993448_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993447_1994170_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994191_1994506_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994523_1995672_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995702_1996578_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996574_1997894_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997966_1999163_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999173_2000661_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003255_2004155_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004292_2005258_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005356_2006307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006528_2007479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	2018975	2068371	4104403	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2018975_2019926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2021063_2021360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021534_2022887_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2023029_2024046_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2026025_2027039_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2027125_2028031_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028187_2028532_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028689_2029148_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029161_2031378_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031374_2032436_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032464_2033439_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033390_2034209_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034221_2034830_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2035004_2035400_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035418_2036858_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036886_2037234_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037252_2038203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038855_2039806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039889_2041707_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041780_2042428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042440_2043370_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043539_2044004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044251_2044932_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044980_2046672_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046687_2047239_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047235_2047607_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047719_2048556_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048566_2049091_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049188_2049368_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049497_2050472_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050602_2050959_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050948_2051824_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051922_2052807_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052828_2054124_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2055072_2055723_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2055810_2057331_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057588_2059454_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060499_2061450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2061467_2061608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2062422_2062782_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062769_2064206_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064202_2064856_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2064852_2066046_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066149_2067424_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067420_2068371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	2079575	2120266	4104403	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2079575_2080526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2080624_2081575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081534_2081948_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082232_2082532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2082941_2085224_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2085909_2087940_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087959_2088172_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088449_2088989_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2089102_2090398_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090474_2091632_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091815_2092715_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092733_2094038_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2094003_2095110_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095197_2095434_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095572_2096643_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096646_2098002_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2098028_2099189_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099191_2099830_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2099831_2101118_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2101176_2102472_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102478_2102985_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102981_2104130_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104157_2104583_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104905_2107788_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107880_2108636_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109401_2110751_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110849_2111800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111898_2112849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112922_2113396_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113421_2114630_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114626_2115400_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115399_2116023_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116188_2116449_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116752_2117334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117400_2117655_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117641_2120266_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	2148049	2213597	4104403	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2148049_2149000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2149200_2150010_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2150133_2151084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2151080_2151974_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2152098_2152293_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2152292_2152634_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2152643_2154506_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2154635_2155148_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2155150_2155474_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2155475_2155886_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2155923_2157135_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2157152_2157665_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2157880_2158372_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2158624_2160661_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2160738_2161941_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2162069_2162720_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2164277_2165228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2165798_2166011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2166028_2166760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2166794_2167436_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2167428_2168097_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2170309_2171086_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2171107_2172265_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2172261_2172693_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2172689_2173493_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2173506_2173908_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2173974_2174946_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2175011_2176235_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2176462_2177413_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2177536_2179990_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2180178_2181483_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2181587_2182241_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2182243_2183554_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2183750_2184311_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2184422_2184623_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2184968_2185535_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2185618_2185822_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2186128_2186449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2186490_2186772_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2186846_2188103_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2188485_2188815_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2190385_2191207_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2191206_2192346_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2192352_2193249_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2193245_2195171_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2195530_2198143_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2198195_2200496_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2200492_2201701_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2201962_2202337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2202333_2203284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2203382_2205377_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2205436_2206402_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2206391_2209253_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2209255_2209762_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2209866_2211075_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2211076_2212015_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2212176_2212650_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2212646_2213597_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	2507243	2565487	4104403	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2507243_2508194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508673_2509330_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509344_2511012_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511014_2511644_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511855_2512950_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2513094_2513907_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2513910_2515614_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2515664_2516795_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516981_2518058_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2518139_2518790_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2518804_2520208_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520491_2521310_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2521306_2522011_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522910_2524026_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2524059_2524434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524456_2525614_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525626_2525860_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526494_2529464_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529478_2529688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529839_2530469_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2530465_2532556_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2532579_2533260_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2533256_2533817_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533823_2534921_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2535073_2535667_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535663_2536956_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536969_2537512_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537521_2538358_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538391_2539453_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539494_2540547_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540562_2540865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541006_2541957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2541974_2542139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2542135_2543830_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543826_2544912_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544959_2545859_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545869_2546514_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547535_2550778_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2550788_2551943_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2552169_2553132_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2553230_2554181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554279_2555230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2555239_2555929_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555988_2556426_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2556471_2557365_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2557412_2558585_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2558581_2559736_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2559932_2560283_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2560272_2560707_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2560723_2561674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2561821_2562289_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2562269_2563427_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2563492_2564419_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2564536_2565487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	2607767	2674267	4104403	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607767_2608718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2609087_2609660_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609662_2610673_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610665_2611166_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611176_2611518_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2611529_2612321_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612337_2612607_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612629_2613418_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613464_2614481_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614697_2616140_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616318_2617938_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_077069066.1|2618058_2619879_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	51.1	6.4e-11
WP_010930330.1|2619957_2621490_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2621523_2623170_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623239_2624262_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624279_2625413_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625415_2626105_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2626104_2626890_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626933_2627698_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627736_2629158_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629223_2629928_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629975_2630395_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630407_2630815_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630998_2631709_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631835_2632126_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632143_2632626_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637131_2638286_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638591_2639608_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639854_2640643_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640709_2641390_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641386_2642157_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642255_2643206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643261_2644179_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644189_2645368_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645387_2646383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647971_2648580_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648567_2649608_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649625_2650588_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650584_2651778_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651774_2652572_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652597_2653584_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653602_2655642_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2655843_2656524_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656537_2657449_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657445_2658024_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658162_2659068_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2659075_2662495_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662482_2665083_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666038_2666671_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2667064_2667823_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2667819_2669022_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669209_2670160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2671067_2672213_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672199_2672955_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2673071_2673251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673316_2674267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	2873664	2946988	4104403	tRNA,protease,transposase	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2873664_2875020_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2876498_2877221_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2877275_2878259_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2878388_2879339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2879335_2880238_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2880325_2881084_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2881096_2882188_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2882285_2883713_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883942_2885157_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2885202_2888073_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2890483_2890972_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2891097_2893794_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893948_2896231_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2896402_2897026_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2897124_2898075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2898121_2898676_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898743_2899589_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2899658_2900627_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2900626_2901490_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2904322_2908249_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_162290921.1|2908539_2908893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930194.1|2908985_2912216_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2912497_2913325_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2913358_2914054_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2914046_2915327_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2915336_2916314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2916295_2917996_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2918098_2919202_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2919232_2919988_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2919994_2921515_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2921557_2921860_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921856_2922489_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2922567_2924433_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2924429_2925224_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2925252_2926368_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2927272_2928151_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2928150_2928975_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2929142_2930093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2930305_2933155_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2933136_2933865_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934005_2935469_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2935465_2935837_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935854_2937168_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2937204_2937663_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2937775_2938726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938722_2939736_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939875_2940862_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2941220_2941928_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2942508_2943459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2943610_2944213_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2944231_2944864_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2944908_2945160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2945101_2946988_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	2958713	3008327	4104403	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2958713_2959664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2959690_2960155_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2961361_2963650_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2963766_2964639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2964681_2965836_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2965870_2966701_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2966784_2968329_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2968371_2968731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2968732_2969146_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2969186_2969504_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2969588_2970305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2970568_2971990_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972056_2974804_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2975136_2976153_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2976489_2977131_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2977221_2978658_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978815_2979889_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2979885_2981022_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2981166_2981511_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2981577_2983458_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2983507_2984443_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2984775_2985792_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986729_2988157_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2988153_2989176_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989165_2989639_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989779_2990667_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990663_2992307_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2992303_2993353_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2994141_2995158_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995257_2995890_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995898_2996288_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996340_2997393_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998256_2999963_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000036_3000537_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000551_3002609_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002635_3002929_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003030_3003978_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003990_3004866_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004986_3005547_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005581_3005905_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006340_3007078_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007376_3008327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	3029278	3101772	4104403	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3029278_3030229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030271_3031447_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031668_3033459_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3033471_3035133_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3035145_3037851_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3038143_3039898_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039894_3040521_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040517_3041369_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3041444_3043559_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043745_3044360_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044505_3044757_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3044826_3046209_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046205_3049385_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050192_3051110_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051161_3051893_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051952_3052525_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054033_3055050_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055187_3056237_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056341_3057292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3057387_3058113_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3058323_3058704_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3059009_3059882_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059889_3060270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3060423_3061698_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063185_3064094_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064891_3065956_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3067792_3068794_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3069016_3069658_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069740_3071567_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071810_3072740_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072739_3073489_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3073560_3074475_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3074494_3075640_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3075700_3076612_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3076692_3077643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077741_3078326_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078360_3079350_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079346_3080288_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080284_3081505_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081547_3081862_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3082053_3082413_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3082414_3084130_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084317_3084989_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085003_3086332_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086328_3087228_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087314_3088400_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3088392_3089526_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3089525_3092207_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092577_3093159_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3093284_3094010_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094006_3094684_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094899_3096081_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096853_3097036_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3097065_3098016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3098145_3098538_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098814_3099726_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099850_3100825_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100821_3101772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	3115279	3168797	4104403	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3115279_3116230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3116342_3116594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3117099_3118218_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3118337_3118550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3118709_3118931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3118983_3119934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3121110_3122481_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3122513_3123305_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3123317_3124373_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3124398_3125274_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3125379_3125628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3125662_3127117_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3127113_3127635_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3127663_3129016_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3129239_3132128_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3134272_3135574_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3135588_3136305_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3136586_3137267_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3137278_3137446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3137554_3137701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3137794_3138454_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3138852_3140685_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3140681_3141632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3142795_3144511_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3144521_3145013_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3145085_3146102_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3146269_3147049_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147067_3147595_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3147888_3148158_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3148248_3150408_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3150528_3151248_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3151244_3152195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3152335_3153553_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3153546_3154158_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3154791_3155769_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3155912_3156659_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3156680_3157127_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3157914_3160146_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3160168_3160969_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3161250_3162483_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3162593_3163583_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3163613_3165002_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3166600_3167584_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3167780_3168797_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	3233255	3306417	4104403	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3233255_3234206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234202_3235222_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235231_3237940_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3238087_3238744_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238842_3239793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239940_3240834_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241033_3242728_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242762_3243689_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243757_3244855_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244873_3245737_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245748_3246531_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246527_3247646_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247642_3249175_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249215_3250223_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250367_3251090_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3251105_3252128_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252444_3253179_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253263_3255009_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255005_3255758_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255802_3256759_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256847_3257414_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257421_3258282_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258311_3259040_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3259071_3259755_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260592_3261507_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261571_3262480_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262570_3263995_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263996_3265319_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265315_3267454_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267531_3272652_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272752_3273061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273130_3273688_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273703_3275185_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3277355_3278693_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278727_3280725_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280742_3282791_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282921_3283788_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284056_3285022_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285136_3286285_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3286709_3287021_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287054_3287315_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287464_3288598_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288668_3289805_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289970_3290765_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290827_3291271_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_023852617.1|3291386_3292337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3292438_3292867_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3292939_3295135_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295356_3296307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296266_3296791_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296922_3297894_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298013_3300458_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300473_3301064_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301307_3302258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3302415_3303681_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3303714_3304812_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3305466_3306417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	3317704	3417817	4104403	protease,tRNA,tail,transposase,terminase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005013747.1|3317704_3318655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319386_3319764_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319748_3320450_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320593_3321286_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321285_3322389_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322498_3324871_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324867_3326427_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326451_3327249_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327280_3328426_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328530_3329973_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329975_3331205_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333342_3334293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335422_3335980_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335955_3336306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336474_3337269_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337265_3338315_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338314_3339004_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3339090_3339588_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339619_3340936_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340952_3341927_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341963_3342422_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342421_3343102_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3343104_3343533_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343585_3345316_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345381_3345954_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345934_3346621_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346976_3347648_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347976_3348198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348197_3348479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348475_3348991_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348990_3349542_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349520_3349763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349767_3350580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350579_3350843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350883_3351081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351061_3351478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351482_3355439_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355431_3355821_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355817_3356351_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356418_3356778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356787_3359400_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359425_3359716_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359733_3360063_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3360072_3360591_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360845_3361346_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361353_3361776_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361772_3362171_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362167_3362563_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3362562_3362763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362764_3363247_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363309_3363561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364235_3365186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365614_3366217_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366339_3366582_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366587_3367643_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367671_3369090_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3369092_3370370_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370356_3370842_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371481_3372432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3372449_3372671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3372688_3373378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373370_3373622_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3374176_3374788_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374859_3375066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375317_3376268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376366_3377440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377607_3378402_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378441_3378966_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378958_3380701_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380910_3381669_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381671_3382379_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382395_3383277_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383287_3384046_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384014_3384770_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384839_3386258_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386279_3386930_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3387063_3387399_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387487_3388438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388514_3390335_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390339_3391413_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391535_3392504_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392577_3393489_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393507_3394080_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394160_3394709_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394708_3396298_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396367_3396607_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396647_3397673_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397738_3398920_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3399016_3399469_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399478_3400819_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3401135_3402173_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402554_3402914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402997_3403939_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404013_3404964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405257_3406352_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3406433_3407315_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407336_3408176_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408251_3409769_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409865_3410966_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410982_3411405_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3411427_3411640_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411686_3412607_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412789_3413539_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413541_3413871_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3414077_3415511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3415522_3415906_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415967_3416768_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416866_3417817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013868	Bordetella pertussis strain C975 chromosome, complete genome	4104403	4026574	4080006	4104403	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4026574_4027525_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027694_4028921_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029120_4029987_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029979_4030942_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031042_4031993_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4032091_4033042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033140_4034091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4034087_4035581_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035577_4038685_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038681_4041750_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041746_4042997_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043177_4043939_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043971_4044622_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044624_4045464_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045704_4046448_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4046530_4046878_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046975_4047818_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047862_4048750_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048776_4048965_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049062_4050520_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050506_4052033_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052051_4052519_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4052518_4053541_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4053661_4054381_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4054456_4055557_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055558_4056749_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056868_4057885_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058203_4058875_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058871_4059780_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059991_4060639_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064490_4065567_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065577_4066387_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066476_4067250_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4067432_4068383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4068271_4069294_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4069283_4070438_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4070477_4071890_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072014_4072881_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4072882_4073707_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4073703_4074465_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4074545_4075232_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4075405_4076413_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4076409_4077189_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4077246_4078509_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4079055_4080006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
