The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	27282	70036	4103242	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	77634	136108	4103242	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	164894	225417	4103242	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023999174.1|184327_188014_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188074_188638_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188645_189068_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189095_189515_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189543_190017_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190116_190614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190768_193039_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193087_194320_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194418_195369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195471_196107_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196103_196997_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197391_198492_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198573_198948_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|199007_201872_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202016_202757_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202826_204038_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204066_205035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205648_206599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206755_207079_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207183_208224_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208229_209009_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209054_209351_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209376_209652_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209708_210353_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210352_211039_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211168_212020_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212070_212796_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212827_214177_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214288_215221_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215678_218474_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219067_222010_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222081_222801_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222839_223388_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223542_224442_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224466_225417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	233347	286935	4103242	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233347_234298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234384_235335_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235331_236282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236380_237178_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238127_238538_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239559_240303_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240346_241390_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241560_243663_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245073_246030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246048_246540_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246536_247892_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247892_248591_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248587_249289_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249541_250591_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250696_251638_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251634_253524_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253610_254249_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254391_255777_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255707_256244_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256395_257787_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257803_258784_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258919_259903_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259967_260867_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260973_262728_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262735_263860_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263873_264854_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265584_266535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267094_267640_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267723_269343_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269358_270513_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270526_270652_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270648_272400_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272396_274076_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274138_274687_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275829_276108_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277151_278102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278119_278266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278379_278541_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278548_278689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279207_279657_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279666_280278_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280436_281291_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281310_282693_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282757_283399_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283538_283997_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284021_284798_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284851_285988_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285984_286935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	390868	448377	4103242	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390868_391819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391955_392873_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392869_393118_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393114_394320_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394392_395388_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395410_396631_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396627_397272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|399002_399812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400116_401070_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401168_402152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402078_402780_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402828_403599_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403595_404774_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404941_406648_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406644_407541_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407581_409171_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409220_410213_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410281_410881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411341_412322_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412397_413348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413436_414351_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414347_415007_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415096_416020_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416025_416481_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416477_417581_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417539_417809_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417768_419388_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419384_420443_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420572_421067_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421159_422137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422332_423538_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423534_425046_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425061_426375_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426565_426745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427154_427889_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430333_431284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431415_431814_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432224_432695_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432783_433128_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433227_434628_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436416_436935_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437045_437801_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437996_439229_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439221_440007_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440073_441045_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441055_442033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442158_443331_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443357_444386_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444451_445645_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447426_448377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	589382	650573	4103242	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589382_590333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590829_591699_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591695_592517_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592716_593208_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593226_594300_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594346_595450_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595525_596146_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596166_596676_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596730_596982_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597045_598179_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598186_598573_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598569_601089_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601517_601856_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601852_602359_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602420_603221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603331_604273_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604366_605902_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607581_609432_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609435_610269_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610268_611210_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611461_612433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612574_614863_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615169_616078_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616132_617098_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617172_618834_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618905_619616_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619582_619747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619764_620715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621413_621797_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621854_622457_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622474_622876_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|623009_623903_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623899_624481_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625275_626010_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626050_627100_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627247_627826_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628212_629190_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629283_633678_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633878_634727_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634885_635698_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635753_636704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636802_637603_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637664_638048_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638059_639493_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639699_640029_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640031_640781_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640963_641884_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641930_642143_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642165_642588_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642604_643705_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643801_645319_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645394_646234_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646255_647137_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647218_648313_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648606_649557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649631_650573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	655897	702088	4103242	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655897_656923_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656963_657203_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657272_658862_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658861_659410_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659490_660063_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660081_660993_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661066_662035_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662157_663231_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663235_665056_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665132_666083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666171_666507_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666640_667291_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667312_668731_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668800_669556_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669524_670283_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670293_671175_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671191_671899_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671901_672660_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672869_674612_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674604_675129_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675168_675963_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676130_677204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677302_678253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678504_678711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678782_679394_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679948_680200_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680192_680882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680899_681121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681138_682089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682728_683214_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683200_684478_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684480_685899_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685927_686983_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686988_687231_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687353_687956_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688384_689335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690009_690261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690323_690806_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690807_691008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|691007_691403_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691399_691798_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691794_692217_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692224_692725_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692979_693498_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693507_693837_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693854_694145_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694170_696783_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696792_697152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697219_697753_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697749_698139_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698131_702088_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	708254	762184	4103242	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708254_709985_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710037_710466_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710468_711149_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711148_711607_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711643_712618_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712634_713951_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713982_714480_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714566_715256_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715255_716305_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716301_717096_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717264_717615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717590_718148_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719277_720228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722365_723595_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723597_725040_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725144_726290_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726321_727119_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727143_728703_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728699_731072_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731181_732285_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732284_732977_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733120_733822_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733806_734184_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_010929591.1|734915_735866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736025_736898_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737238_737457_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737496_738876_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738917_740315_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740354_742007_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742010_742895_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742894_743836_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743914_745534_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745700_746516_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746583_747153_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747153_748104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748758_749856_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749889_751155_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751312_752263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752506_753097_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753112_755557_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755676_756648_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756779_757304_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757263_758214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758435_760631_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760703_761132_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761233_762184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	853062	902326	4103242	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|853062_854013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854030_854585_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854586_855021_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855017_855452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855435_856239_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856255_857071_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857067_857883_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858029_858731_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858758_860717_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860799_861750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861970_862639_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862762_863869_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863881_866995_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866991_868485_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868499_869171_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869214_869709_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869849_870497_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870600_872649_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872645_874658_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874683_876018_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876126_877119_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877185_879270_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879294_880266_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880394_881426_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881429_882581_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882751_883675_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883752_884577_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884773_885790_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885986_886970_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888568_889957_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889987_890977_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891087_892320_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892601_893402_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893424_895656_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896443_896890_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896911_897658_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897801_898779_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899412_900024_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900017_901235_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901375_902326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	911938	976878	4103242	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|911938_912889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912885_914718_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915116_915776_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915869_916016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916124_916292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916303_916984_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917265_917982_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917996_919298_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921442_924331_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924554_925907_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925935_926457_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926453_927908_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927942_928191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928296_929172_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929197_930253_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930265_931057_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931089_932460_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933636_934587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934639_934861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935020_935233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935352_936471_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936976_937228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|937340_938291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938287_938671_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938725_940540_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940689_941517_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941562_942543_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942539_942752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942748_943930_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944093_944828_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944829_947442_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947577_949491_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950106_950517_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950614_951700_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951798_952749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952745_953720_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953844_954756_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955032_955425_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955554_956505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956534_956717_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957489_958671_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958886_959564_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|959560_960286_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|960411_960993_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961363_964045_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|964044_965178_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965170_966256_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966342_967242_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967238_968567_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968581_969253_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|969440_971156_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971157_971517_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971708_972023_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972065_973286_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973282_974224_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974220_975210_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975244_975829_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975927_976878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	996278	1059429	4103242	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|996278_997229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997333_998383_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998520_999537_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001045_1001618_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001677_1002409_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002460_1003378_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004185_1007365_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007361_1008744_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008813_1009065_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009210_1009825_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1010011_1012126_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012201_1013053_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013049_1013676_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013672_1015427_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015719_1018425_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018437_1020099_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020111_1021902_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022123_1023299_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023341_1024292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024390_1025131_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025325_1027362_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027379_1028390_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028507_1029701_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029730_1030504_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030500_1031691_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031716_1032655_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032651_1035000_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035154_1035796_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035899_1037033_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037125_1037278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037309_1037858_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037876_1038362_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038539_1039478_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039480_1039798_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039843_1040788_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042468_1043119_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043172_1043508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043504_1044365_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044381_1044663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044736_1045000_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045243_1046194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046492_1047230_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047665_1047989_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048023_1048584_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048704_1049580_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049592_1050540_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050641_1050935_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050961_1053019_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053033_1053534_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053607_1055314_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056177_1057230_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057282_1057672_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057680_1058313_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058412_1059429_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	1065413	1125476	4103242	transposase,tRNA,holin,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1065413_1066841_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067778_1068795_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069127_1070063_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070112_1071993_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072059_1072404_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072548_1073685_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073681_1074755_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074912_1076349_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076439_1077081_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|1077416_1078433_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080475_1081426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082628_1084050_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084313_1085030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085114_1085432_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085472_1085886_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085887_1086247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086289_1087834_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087917_1088748_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088782_1089937_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089979_1090852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090968_1093257_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094463_1094928_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094954_1095905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095922_1096060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096272_1097049_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097093_1097951_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097972_1098989_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099123_1100164_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100358_1102440_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102675_1104169_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104399_1105194_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105414_1106773_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106769_1107612_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107630_1109517_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109458_1109710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109754_1110387_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110405_1111008_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111159_1112110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112690_1113398_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113756_1114743_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114882_1115896_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115892_1116843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116860_1117001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116955_1117414_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117450_1118764_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118781_1119153_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119149_1120613_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120753_1121482_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121463_1124313_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124525_1125476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	1156542	1218713	4103242	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1156542_1157493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157591_1158215_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158388_1160671_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160825_1163522_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163647_1164136_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166546_1169417_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169462_1170677_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170906_1172334_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172431_1173523_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173535_1174294_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174381_1175284_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175280_1176231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176360_1177344_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177398_1178121_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179599_1180955_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181035_1183411_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183575_1185651_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185712_1186513_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186614_1187577_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187564_1188320_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188427_1190065_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190132_1190870_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190972_1191548_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191720_1192257_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192259_1192604_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192619_1193465_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193503_1194883_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194960_1195842_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195940_1196891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196887_1197298_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197405_1198260_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198252_1199215_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199260_1200385_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200490_1201369_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201493_1202273_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202426_1203848_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204282_1205980_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206206_1207148_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207474_1208221_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208228_1209155_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209276_1210194_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210233_1211187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211211_1211790_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213463_1214072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214149_1214503_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214586_1215576_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1215572_1215761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215778_1216729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216815_1217766_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217762_1218713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	1269641	1326851	4103242	transposase	Klosneuvirus(16.67%)	50	NA	NA
WP_010931070.1|1269641_1270592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274338_1274950_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275172_1276633_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276729_1278322_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278675_1278933_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278934_1280275_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280370_1281060_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281072_1282503_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284227_1285049_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285059_1286631_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286659_1287637_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287663_1288467_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288463_1289258_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289265_1290501_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290493_1290928_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291677_1292628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293249_1294977_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295088_1296447_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296503_1296722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296739_1297690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297730_1298801_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298823_1299702_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299873_1300845_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1301007_1301850_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302011_1302692_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302685_1303855_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303851_1304883_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304926_1306168_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306202_1307735_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307815_1308439_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308469_1309081_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309116_1309587_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|1309776_1310010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1310017_1311022_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311058_1312573_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312576_1313536_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313564_1314368_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314369_1316004_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316087_1317149_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317347_1317617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317620_1318145_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318560_1319511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319507_1320542_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320650_1321289_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321583_1321811_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321933_1322647_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322891_1323842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323945_1324227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324341_1325790_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325900_1326851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	1711034	1768313	4103242	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|1711034_1711985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1712083_1714684_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1714790_1715795_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1715903_1717244_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1717284_1718313_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1718508_1719054_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1719050_1719611_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1719709_1720660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1720697_1721285_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1721302_1721686_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1723045_1724338_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1724472_1725513_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1725610_1726627_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1726894_1727542_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1727667_1728426_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1728410_1729190_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1729207_1730092_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1730088_1730868_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1730972_1731572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1731860_1732613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1732731_1734132_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1734155_1734554_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1734729_1734930_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1735068_1735797_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1735930_1737346_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1737349_1738213_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1738225_1738975_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1739157_1741173_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1741154_1741823_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1742597_1743548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1743696_1744035_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1744092_1744254_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1744285_1744486_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1744751_1747325_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1747395_1749945_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1752495_1752984_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1753075_1754227_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1754280_1755102_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1755140_1756370_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1756498_1756939_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1757049_1758000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1757996_1758470_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1758631_1759570_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1759571_1760780_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1760884_1761391_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1761393_1764255_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1764244_1765210_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1765269_1767264_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1767362_1768313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	1894559	1964211	4103242	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1894559_1897217_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1897294_1898497_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1898493_1899006_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1899128_1899566_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1899842_1900793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1900891_1901842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1902095_1903901_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1904014_1904182_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1904245_1904482_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1904850_1906050_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1907565_1908516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1908967_1909969_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1910141_1910999_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1910995_1912258_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1912358_1912733_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1912805_1913993_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1914077_1914848_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1914961_1915726_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1915676_1916978_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1916974_1917781_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1919525_1920497_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1920653_1921166_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1921324_1922299_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1923299_1924094_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1924119_1924926_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1925036_1925627_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1925637_1926816_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1926918_1927293_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1927545_1928877_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1928943_1932174_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1933664_1934411_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1934495_1934957_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1934994_1936053_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1936015_1937845_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1937884_1938457_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1939881_1940703_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1941021_1942344_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1942703_1943339_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1943298_1944249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1945119_1945992_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1946069_1947209_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1947567_1948824_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1948829_1949357_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1949361_1950180_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_062810228.1|1950179_1950902_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1950923_1951238_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1951255_1952404_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1952434_1953310_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1953306_1954626_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1954698_1955895_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1955905_1957393_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1959987_1960887_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1961024_1961990_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1962088_1963039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1963260_1964211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	1975707	2025103	4103242	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1975707_1976658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1977795_1978092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1978266_1979619_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1979761_1980778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1982757_1983771_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1983857_1984763_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1984919_1985264_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1985421_1985880_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1985893_1988110_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1988106_1989168_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1989196_1990171_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1990122_1990941_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1990953_1991562_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|1991736_1992132_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1992150_1993590_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1993618_1993966_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1993984_1994935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1995587_1996538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1996621_1998439_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|1998512_1999160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1999172_2000102_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2000271_2000736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2000983_2001664_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2001712_2003404_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2003419_2003971_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2003967_2004339_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2004451_2005288_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2005298_2005823_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005920_2006100_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2006229_2007204_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2007334_2007691_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2007680_2008556_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2008654_2009539_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2009560_2010856_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2011804_2012455_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2012542_2014063_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_077069210.1|2014320_2016186_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2017231_2018182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2018199_2018340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2019154_2019514_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2019501_2020938_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2020934_2021588_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2021584_2022778_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2022881_2024156_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2024152_2025103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2036307	2076998	4103242	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2036307_2037258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2037356_2038307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2038266_2038680_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2038964_2039264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2039673_2041956_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2042421_2042616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2042641_2044672_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2044691_2044904_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2045181_2045721_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2045834_2047130_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2047206_2048364_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2048547_2049447_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2049465_2050770_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2050735_2051842_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2051929_2052166_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2052304_2053375_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2053378_2054734_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2054760_2055921_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2055923_2056562_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2056563_2057850_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2057908_2059204_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2059210_2059717_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2059713_2060862_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2060889_2061315_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2061637_2064520_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2064612_2065368_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2066133_2067483_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2067581_2068532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2068630_2069581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2069654_2070128_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2070153_2071362_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2071358_2072132_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2072131_2072755_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2072920_2073181_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2073484_2074066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2074132_2074387_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2074373_2076998_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2214005	2275353	4103242	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2214005_2214956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2215072_2215792_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2215964_2216951_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2216951_2217434_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2217437_2218721_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2218717_2219656_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2219652_2221362_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2221371_2222619_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2224229_2225519_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2226656_2227415_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2228091_2228835_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2228909_2229650_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2229845_2230682_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2230732_2231503_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2231552_2232605_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2232601_2233228_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2233224_2234259_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2234437_2235454_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2235552_2236503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2239243_2240533_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2240651_2241089_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2241132_2242341_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2242487_2242952_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2242975_2243926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2244910_2245684_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2245680_2246679_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2246763_2247540_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2247695_2249300_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2249680_2250805_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015039998.1|2250931_2251555_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2251551_2253453_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2253501_2254296_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2254308_2255310_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2255306_2255813_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2255805_2256654_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2256751_2257294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2257337_2258288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2258443_2258770_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2258766_2259051_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2259047_2259527_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2259523_2261152_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2261148_2261493_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2261492_2264426_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2265584_2266535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2266633_2266930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2267036_2267954_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2267958_2268672_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2268685_2269657_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2271376_2271757_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2271760_2272948_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2273371_2274109_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2274402_2275353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2296144	2367298	4103242	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2296144_2297095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2297647_2299273_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2299322_2300357_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2300359_2301706_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2301702_2303217_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2303207_2304218_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2304691_2305633_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2305641_2306610_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2308149_2309118_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2309295_2310285_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2310331_2311090_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2311279_2312017_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2312115_2313066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2313250_2314033_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2314026_2314728_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2314967_2315570_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2316896_2317847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2317843_2319400_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2319392_2320166_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2320224_2321175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2321256_2322432_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2322445_2324503_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2324499_2325525_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2325536_2326826_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2326848_2327946_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2327942_2328833_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2328829_2330914_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2330945_2332115_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2332156_2332897_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2332896_2333667_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2333991_2334159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2334522_2335308_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2335334_2337419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2337586_2339542_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2339865_2340366_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2340464_2341991_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2342128_2343016_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2343030_2343984_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2344035_2346126_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2346141_2346528_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2349221_2350025_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2351318_2352221_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2352285_2353062_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2353383_2354433_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2354556_2356227_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2356231_2357026_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2357124_2358075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2358094_2359000_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2359077_2359776_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2359935_2360880_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2360889_2362377_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2362376_2363444_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2363507_2364920_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2365105_2366326_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2366347_2367298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2463125	2521906	4103242	transposase,tRNA	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2463125_2465075_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2465462_2466239_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2466244_2466637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2467058_2468009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2468005_2469103_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2469134_2470085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2471866_2473108_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2473119_2473893_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2473919_2474870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2475349_2476006_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2476020_2477688_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2477690_2478320_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2478531_2479626_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2479770_2480583_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2480586_2482290_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2482340_2483471_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2483657_2484734_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2484815_2485466_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2485480_2486884_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2487167_2487986_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2487982_2488687_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2489586_2490702_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2490735_2491110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2491132_2492290_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2492302_2492536_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2493170_2496140_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2496154_2496364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2496515_2497145_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2497141_2499232_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2499255_2499936_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2499932_2500493_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2500499_2501597_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2501749_2502343_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2502339_2503632_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2503645_2504188_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2504197_2505034_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2505067_2506129_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2506170_2507223_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2507238_2507541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2507682_2508633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2508650_2508815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2508811_2510506_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2510502_2511588_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2511635_2512535_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2512545_2513190_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2514211_2517454_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2517464_2518619_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2518845_2519808_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2519906_2520857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2520955_2521906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2574441	2640941	4103242	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2574441_2575392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2575761_2576334_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2576336_2577347_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2577339_2577840_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2577850_2578192_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2578203_2578995_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2579011_2579281_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2579303_2580092_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2580138_2581155_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2581371_2582814_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2582992_2584612_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2584732_2586553_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2586631_2588164_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2588197_2589844_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2589913_2590936_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2590953_2592087_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2592089_2592779_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2592778_2593564_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2593607_2594372_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2594410_2595832_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2595897_2596602_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2596649_2597069_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2597081_2597489_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2597672_2598383_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2598509_2598800_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2598817_2599300_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2603805_2604960_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2605265_2606282_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2606528_2607317_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2607383_2608064_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2608060_2608831_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2608929_2609880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2609935_2610853_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2610863_2612042_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2612061_2613057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2614645_2615254_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2615241_2616282_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2616299_2617262_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2617258_2618452_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2618448_2619246_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2619271_2620258_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2620276_2622316_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2622517_2623198_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2623211_2624123_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2624119_2624698_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2624836_2625742_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2625749_2629169_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2629156_2631757_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2632712_2633345_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2633738_2634497_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2634493_2635696_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2635883_2636834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2637741_2638887_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2638873_2639629_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2639745_2639925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2639990_2640941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2669056	2706468	4103242	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2669056_2670007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2670105_2671056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2671148_2671688_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2671794_2672139_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2672196_2673645_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2673832_2674168_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2675795_2676974_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2677056_2677557_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2677666_2678368_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2678379_2678844_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2678858_2679134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2679130_2679907_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2679935_2680763_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2680888_2681359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2681485_2682379_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2682426_2683608_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2683620_2684436_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2684569_2685097_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2685093_2685591_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2685738_2686116_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2686337_2687288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2687386_2687998_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2688232_2689360_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2689470_2690559_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2690611_2691463_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2691482_2692364_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2692540_2693854_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2694064_2694898_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2694894_2695476_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2695829_2696780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2696795_2697911_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2698013_2698940_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2698939_2700178_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2700174_2700942_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2700942_2701644_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2701725_2702172_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2703061_2703700_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2704468_2705419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2705517_2706468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2805595	2868039	4103242	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	55	NA	NA
WP_023853639.1|2805595_2806546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806874_2807480_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2807533_2808847_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808921_2809392_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2809391_2810180_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2810190_2811843_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2811930_2812881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2814042_2814549_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2814545_2815310_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2815325_2815610_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2815674_2816664_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2816835_2817765_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2817736_2818423_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2818456_2819002_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2819046_2820312_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2820308_2821211_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2822392_2823337_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2823431_2824949_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2824990_2826619_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2826726_2827608_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2830720_2831095_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2831119_2831458_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2831501_2833136_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2833174_2834521_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2834628_2836050_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2836119_2836704_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2836806_2837757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837891_2838998_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2839008_2840106_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2840250_2841456_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2841462_2841984_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2841980_2842472_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2842468_2842720_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2842700_2843186_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2843321_2846783_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2846800_2847685_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2847694_2848126_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2848372_2848876_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2848953_2850354_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2850428_2851304_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2851300_2852308_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852775_2853081_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2853171_2853762_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853952_2854969_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2855160_2857497_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2857579_2858014_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2858112_2859063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859059_2859854_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859885_2860590_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860664_2861465_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861461_2861869_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861865_2862507_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862499_2864500_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865760_2867092_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867088_2868039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2882513	2923872	4103242	protease,transposase	uncultured_Mediterranean_phage(40.0%)	31	NA	NA
WP_010930800.1|2882513_2883464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2883481_2883640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2883794_2887616_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887772_2888441_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888445_2890119_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890137_2891457_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891461_2893777_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893832_2896001_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2895997_2901187_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901276_2901591_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901818_2902064_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902158_2902677_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902776_2903982_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904097_2905495_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905611_2906190_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906262_2907654_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907821_2908772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909052_2909673_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909669_2910083_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910079_2911123_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911178_2911367_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911376_2912141_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912231_2912888_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912979_2913738_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913763_2915365_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915565_2916570_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916670_2916934_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917051_2917828_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918418_2919369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921752_2922865_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2922921_2923872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	2954258	2997949	4103242	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2954258_2955209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2955226_2955376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2955329_2956226_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958503_2960729_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960893_2961982_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961938_2962592_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962639_2963437_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963968_2964919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2964993_2966148_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966204_2967155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967253_2967559_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967587_2968022_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968023_2969268_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969264_2969975_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969989_2970901_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971263_2971668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971664_2972123_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2972129_2973038_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2973034_2973901_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973887_2974715_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974725_2975853_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976930_2978169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978210_2979473_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979479_2980232_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980283_2980469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980744_2981209_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981240_2981900_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982044_2984153_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984149_2985100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985203_2985824_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2985915_2986668_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987802_2988927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988972_2989341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989582_2990533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991568_2992111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992308_2992479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992496_2993447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2993443_2994409_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2994478_2995315_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2995827_2996937_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2996998_2997949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	3377894	3431635	4103242	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3377894_3378845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379249_3379894_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379918_3380503_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380603_3381221_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381223_3382939_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382935_3383244_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383260_3383878_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383922_3384225_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384325_3385180_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385367_3385592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385761_3386034_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386451_3386859_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387228_3388023_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388123_3389359_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389427_3390444_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390455_3391832_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391828_3393025_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393021_3394560_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394556_3395816_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3397756_3398707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399473_3400568_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400560_3401895_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401848_3402532_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3402557_3403721_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3403717_3404719_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404718_3405591_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405587_3406337_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406333_3407125_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407121_3408261_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408536_3409322_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409355_3410138_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410141_3410531_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3411670_3412534_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3412569_3413658_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413654_3414605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414958_3417937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418863_3419742_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421690_3422641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422637_3423105_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423147_3423918_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3423938_3424739_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424749_3426159_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426253_3427039_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427278_3428295_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428402_3428795_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428932_3429613_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429617_3430589_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430684_3431635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	3441811	3512977	4103242	tRNA,transposase	Acinetobacter_phage(27.27%)	57	NA	NA
WP_010929632.1|3441811_3442828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443158_3443380_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445740_3446658_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447155_3448364_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448443_3450015_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450132_3451068_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451256_3452201_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452768_3458486_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458491_3459619_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459674_3460301_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010930158.1|3460572_3461589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461684_3462395_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462391_3463381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463476_3465108_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465110_3465848_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466003_3466876_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3467144_3468365_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468361_3469021_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469092_3469725_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469754_3470273_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470283_3471393_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471439_3472294_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472295_3473198_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474420_3475371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3478111_3478270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3478290_3479079_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479075_3480107_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480125_3480689_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480744_3482265_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482528_3483233_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3483240_3483978_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484083_3484458_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484500_3485790_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485786_3486956_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486952_3487792_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487851_3488787_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488799_3489750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489848_3490811_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490842_3491202_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491326_3492229_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492230_3494003_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494037_3494814_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496137_3497088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3497939_3498260_+	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_003815364.1|3498332_3499214_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3499330_3499573_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3499710_3500181_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3500193_3500733_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3500767_3502309_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3502407_3503313_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3503355_3504756_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3504765_3505188_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3505370_3506255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3506330_3507407_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3507713_3509816_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3509858_3511928_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3512026_3512977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	3530095	3583896	4103242	tRNA,transposase	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3530095_3531046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531386_3532337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532435_3533386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533682_3534180_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534222_3535998_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536005_3536872_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536878_3537613_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538782_3539577_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539866_3540457_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540490_3541819_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541893_3543039_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543150_3544149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544111_3544546_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546062_3546947_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546943_3548149_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548145_3549006_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3549118_3550909_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3550949_3551615_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3551615_3551924_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552089_3553376_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3554809_3555760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557711_3558926_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559031_3560021_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560017_3560626_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560638_3561268_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561264_3561885_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561916_3562708_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563559_3564015_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3564033_3564960_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565013_3566300_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567230_3568103_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568099_3569050_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569148_3570099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3570203_3570434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3570560_3570950_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3570966_3573348_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3573340_3574717_-	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3574732_3575728_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3575746_3576739_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3576979_3577540_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3577544_3577871_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3577907_3578720_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3578730_3579813_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3579899_3581174_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3581896_3582847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3582945_3583896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013866	Bordetella pertussis strain J311 chromosome, complete genome	4103242	4025413	4078845	4103242	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4025413_4026364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026533_4027760_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027959_4028826_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028818_4029781_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029881_4030832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030930_4031881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031979_4032930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032926_4034420_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034416_4037524_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037520_4040589_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040585_4041836_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4042016_4042778_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4042810_4043461_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4043463_4044303_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044543_4045287_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4045369_4045717_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045814_4046657_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046701_4047589_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047615_4047804_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047901_4049359_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049345_4050872_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050890_4051358_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4051357_4052380_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4052500_4053220_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4053295_4054396_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054397_4055588_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055707_4056724_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057042_4057714_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057710_4058619_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058830_4059478_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4063329_4064406_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064416_4065226_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4065315_4066089_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4066089_4066254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4066271_4067222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4067110_4068133_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4068122_4069277_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4069316_4070729_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4070853_4071720_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4071721_4072546_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4072542_4073304_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4073384_4074071_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4074244_4075252_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4075248_4076028_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4076085_4077348_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4077894_4078845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
