The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	27282	78584	4105330	transposase,tRNA	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69084_70035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	107426	175250	4105330	transposase,tRNA	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132699_132984_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136525_138034_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138780_142743_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142795_143578_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143665_144889_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144872_145805_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145810_146623_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147935_148907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149025_149808_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150574_151555_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151551_152280_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152304_152736_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152837_153713_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153763_154963_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155067_155529_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155634_157032_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157028_157706_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157761_159072_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159083_159782_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159945_160722_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160887_161910_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162138_162774_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|162779_164333_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164891_165842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167285_168188_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169077_170508_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170541_171171_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174299_175250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	178632	236269	4105330	protease,transposase,tRNA	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181334_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182423_184328_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189528_189975_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190753_193024_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193099_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194403_195354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195456_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197376_198477_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198558_198933_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198992_201857_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206740_207064_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207168_208209_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209361_209637_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210337_211024_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211222_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212055_212781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219052_221896_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225620_226316_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226332_227745_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227857_229288_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229329_231243_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231561_232128_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232218_233220_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233334_234285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	250683	303019	4105330	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_003814337.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251621_253511_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253597_254236_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254378_255764_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265571_266522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267752_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274125_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278075_278291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280423_281272_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287020_287647_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287669_288596_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288604_290191_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290187_291192_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291391_292252_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292283_293285_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293355_294165_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294242_296102_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296230_297433_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297546_298428_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299930_300491_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300550_301501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301692_301980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302068_303019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	390855	448364	4105330	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390855_391806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400103_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401155_402139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403582_404761_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404928_406635_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407568_409158_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411328_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412384_413335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413423_414338_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415083_416007_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416012_416468_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417523_417796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417755_419375_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419371_420430_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421146_422124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423521_425033_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425048_426362_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430320_431271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431402_431801_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439208_439994_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442145_443318_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447413_448364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	589369	650560	4105330	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589369_590320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590795_591686_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591682_592504_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592703_593195_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593213_594287_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594333_595437_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595512_596133_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596153_596663_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596717_596969_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597032_598166_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598173_598560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598556_601076_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601504_601843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601839_602346_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602407_603208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603318_604260_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604353_605889_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607568_609419_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609422_610256_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610255_611197_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611448_612420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612561_614850_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615156_616065_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616119_617085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617159_618821_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618892_619603_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619751_620702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621400_621784_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621841_622444_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622461_622863_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622978_623890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623886_624468_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625262_625997_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626037_627087_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627234_627813_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628199_629177_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629270_633665_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633865_634714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634872_635685_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635740_636691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636789_637590_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637651_638035_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638046_639399_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639686_640016_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640018_640768_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640950_641871_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641917_642130_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642152_642575_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642591_643692_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643788_645306_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645381_646221_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646242_647115_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647205_648300_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648593_649544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649618_650560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	655884	702074	4105330	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	49	NA	NA
WP_023995141.1|655884_656910_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656950_657190_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657259_658849_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658848_659397_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659477_660050_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660068_660980_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661053_662022_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662144_663218_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663222_665043_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_033446132.1|666157_666493_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666626_667277_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667298_668717_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668786_669542_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669510_670269_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670279_671161_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671177_671885_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671887_672646_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672855_674598_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674590_675115_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675154_675949_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676116_677190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677288_678239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678490_678697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678768_679380_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679934_680186_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680178_680868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681124_682075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682714_683200_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683186_684464_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684466_685885_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685913_686969_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686974_687217_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687339_687942_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688370_689321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689995_690247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690309_690792_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690805_690994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690993_691389_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691385_691784_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691780_692203_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692210_692711_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692965_693484_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693493_693823_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693840_694131_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694156_696769_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696778_697138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697205_697739_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697735_698125_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698117_702074_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	708240	762170	4105330	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708240_709971_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710023_710452_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710454_711135_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711134_711593_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711629_712604_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712620_713937_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713968_714466_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714552_715242_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715241_716291_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716287_717082_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717250_717601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717576_718134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719263_720214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722351_723581_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723583_725026_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725130_726276_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726307_727105_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727129_728689_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728685_731058_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731167_732271_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732270_732963_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733106_733808_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733792_734170_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734901_735852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736011_736884_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737224_737443_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737482_738862_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738903_740301_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740340_741993_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741996_742881_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742880_743822_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743900_745520_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745686_746502_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746569_747139_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747139_748090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748744_749842_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749875_751141_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751298_752249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752492_753083_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753098_755543_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755662_756634_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756765_757290_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757249_758200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758421_760617_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760689_761097_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761219_762170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	884759	952735	4105330	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884759_885776_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885972_886956_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888554_889943_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889973_890963_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891073_892306_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892587_893388_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893410_895642_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896429_896876_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896897_897644_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897787_898765_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899398_900010_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900003_901221_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901361_902312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902308_903028_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903148_905308_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905398_905668_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905756_905963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905961_906489_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906507_907287_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907454_908471_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908543_909035_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909045_910761_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911924_912875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912871_914704_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915102_915762_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916289_916970_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917251_917968_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917982_919284_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921428_924317_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924540_925893_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925921_926443_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926439_927894_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927928_928177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928282_929158_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929183_930239_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930251_931043_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931075_932446_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933622_934573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934625_934847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935006_935219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935338_936457_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936553_936769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936962_937214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937326_938277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938273_938657_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938711_940526_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940675_941503_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941548_942529_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942525_942738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942734_943916_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944079_944814_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944815_947428_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947563_949477_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950092_950503_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950600_951686_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951784_952735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	996264	1068781	4105330	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996264_997215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997319_998369_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998506_999523_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001031_1001604_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001663_1002395_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002446_1003364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004171_1007351_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007347_1008730_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008799_1009051_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009196_1009811_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009997_1012058_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012187_1013039_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013035_1013662_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013658_1015413_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015705_1018411_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018423_1020085_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020097_1021888_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022109_1023285_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023327_1024278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024376_1025117_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025311_1027348_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027365_1028376_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028493_1029687_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029716_1030490_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030486_1031677_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031702_1032641_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032637_1034986_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035140_1035782_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037111_1037264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037295_1037844_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037862_1038348_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038525_1039464_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039466_1039784_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039829_1040774_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042454_1043105_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043158_1043494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043490_1044351_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044367_1044649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044722_1044986_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045229_1046180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046478_1047216_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047651_1047975_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048009_1048570_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048690_1049566_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049578_1050526_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050627_1050921_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050947_1053005_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053019_1053520_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053593_1055300_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056163_1057216_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057268_1057658_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057666_1058299_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058398_1059415_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060245_1061253_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061249_1062893_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062889_1063777_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063917_1064391_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064380_1065403_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065399_1066827_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067764_1068781_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	1072534	1134610	4105330	holin,transposase,tRNA	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1072534_1073671_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073667_1074741_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074898_1076335_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076425_1077067_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077402_1078419_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080461_1081412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082614_1084036_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084299_1085016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085100_1085418_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085458_1085872_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085873_1086233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086275_1087820_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087903_1088734_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088768_1089923_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089965_1090838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090954_1093243_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094449_1094914_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094940_1095891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096258_1097035_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097079_1097937_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097958_1098975_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099109_1100150_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100344_1102426_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102661_1104155_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104385_1105180_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105400_1106759_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106755_1107598_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107616_1109503_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109444_1109696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109740_1110373_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110391_1110994_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111145_1112096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112676_1113384_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113742_1114729_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114868_1115882_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115878_1116829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116941_1117400_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117436_1118750_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118767_1119139_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119135_1120599_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120739_1121468_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121449_1124299_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124511_1125462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125629_1126454_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126453_1127332_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128236_1129352_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129380_1130175_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130171_1132037_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132115_1132748_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132744_1133047_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133089_1134610_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	1152180	1218699	4105330	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152180_1153977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153976_1154945_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155014_1155860_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155927_1156482_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156528_1157479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157577_1158210_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158374_1160657_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160811_1163508_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163633_1164122_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166532_1169403_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169448_1170663_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170892_1172320_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172417_1173509_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173521_1174280_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174367_1175270_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175266_1176217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176346_1177330_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177384_1178107_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179585_1180941_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181021_1183397_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183561_1185637_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185698_1186493_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186600_1187563_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187550_1188306_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188413_1190051_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190118_1190856_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190958_1191534_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191706_1192243_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192275_1192590_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192605_1193451_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193489_1194869_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194946_1195828_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195926_1196877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196873_1197284_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197391_1198246_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198238_1199201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199246_1200371_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200476_1201355_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201479_1202259_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202412_1203834_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204268_1205966_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206192_1207134_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207460_1208207_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208214_1209141_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209262_1210180_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210219_1211173_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211197_1211776_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213449_1214058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214135_1214489_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214572_1215562_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215764_1216715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216801_1217752_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217748_1218699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	1269627	1326838	4105330	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269627_1270578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274324_1274936_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275158_1276619_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276715_1278308_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278661_1278919_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278920_1280261_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280356_1281046_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281058_1282489_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284213_1285035_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285045_1286617_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286645_1287623_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287649_1288453_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288449_1289244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289251_1290487_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290500_1290914_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_162291062.1|1291269_1291542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1291663_1292614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293235_1294963_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295074_1296433_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296725_1297676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297716_1298787_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298809_1299688_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299859_1300831_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300993_1301836_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301997_1302678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302671_1303841_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303837_1304869_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304936_1306154_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306188_1307721_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307801_1308425_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308455_1309067_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309102_1309573_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310004_1311009_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311045_1312560_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312563_1313523_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313551_1314355_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314356_1315991_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316074_1317136_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317334_1317604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317607_1318132_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318547_1319498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319494_1320529_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320637_1321276_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321570_1321798_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321920_1322634_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322878_1323829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323968_1324214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324328_1325777_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929584.1|1325887_1326838_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	1417071	1469224	4105330	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1417071_1418022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418188_1418542_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418554_1418917_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418958_1419384_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419586_1420843_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421041_1422022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422171_1423413_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423511_1424462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424470_1425166_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427987_1428587_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428597_1430763_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430786_1432571_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432570_1432660_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433354_1433627_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433626_1435693_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435689_1436640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436738_1437689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437804_1438137_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438133_1438820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438806_1439766_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439798_1442168_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442167_1442800_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442901_1444242_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444288_1445644_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445934_1446171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446358_1446676_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446948_1447464_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447734_1448490_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448828_1449035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449042_1449702_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449996_1452201_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452311_1453535_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453657_1454632_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454699_1455893_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455907_1456708_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456704_1458561_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458557_1459163_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459181_1460567_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461292_1462519_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462607_1463390_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463488_1464439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464465_1465239_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465250_1466492_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468273_1469224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	1513149	1581234	4105330	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1513149_1513638_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513755_1514334_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514439_1514808_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514906_1515857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515863_1516976_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517662_1518865_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519068_1521729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521741_1525146_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525813_1528039_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528085_1528412_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528462_1529071_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529169_1530120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530189_1530954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1530950_1531487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531653_1532505_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532564_1533191_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533187_1534138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534236_1535349_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535338_1536340_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536445_1537957_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537953_1539258_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539369_1539930_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540197_1540752_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541207_1541423_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541677_1544275_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544271_1545459_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1546116_1546731_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1546819_1547941_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547958_1548864_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549756_1550707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550888_1551641_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551709_1552369_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552365_1553094_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553106_1555386_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555410_1555614_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555655_1556288_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556423_1557341_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557337_1558051_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558288_1559059_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559063_1559663_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559907_1561398_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561456_1561741_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1562306_1563233_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563369_1564110_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564276_1565653_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565834_1566740_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568391_1570194_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1570311_1570962_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571060_1572011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572032_1573253_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573438_1574851_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574914_1575982_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575981_1577469_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577478_1578423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578582_1579281_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579358_1580264_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580283_1581234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	1617183	1672774	4105330	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617183_1618134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618192_1618966_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618958_1620515_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620511_1621462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622788_1623391_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623630_1624332_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624325_1625108_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625292_1626243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626341_1627079_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627268_1628027_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628073_1629063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629240_1630209_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631748_1632717_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632725_1633667_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634140_1635151_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635141_1636656_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636652_1637999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1638001_1639036_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639085_1640711_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641263_1642214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642318_1643266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643319_1645134_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645126_1645801_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645930_1649005_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649018_1649318_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649632_1650256_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1650499_1651369_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651346_1652291_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652376_1653303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653415_1654195_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654185_1655382_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655412_1656363_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656584_1657274_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657338_1658094_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658145_1659138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659147_1660101_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660216_1661179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662580_1663009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663005_1663956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1664249_1664972_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665410_1666598_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1666601_1666952_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668701_1669673_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669686_1670400_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670404_1671322_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671428_1671725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671823_1672774_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	1830541	1961602	4105330	protease,transposase,tRNA	Klosneuvirus(18.75%)	119	NA	NA
WP_005013747.1|1830541_1831492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831616_1832426_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1832626_1833577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834850_1836068_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837124_1838027_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838103_1838976_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839106_1839475_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839532_1840579_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840774_1842031_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842035_1843373_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843522_1844479_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844581_1845514_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845629_1845950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845942_1846302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846349_1847924_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847976_1848921_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848938_1849769_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849761_1851396_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851392_1852748_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853654_1855232_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855235_1856510_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856607_1856982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858697_1859831_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859868_1860474_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860470_1861289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861360_1863985_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863971_1864226_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864292_1864874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865177_1865438_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865603_1866227_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866226_1867000_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1866996_1868205_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868230_1868704_-	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1868777_1869728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1869826_1871176_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1871941_1872697_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1872789_1875672_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1875994_1876420_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1876447_1877596_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1877592_1878099_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1878114_1879401_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1879450_1880746_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1880747_1881386_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1881391_1882549_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1882575_1883931_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1883934_1885005_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1885143_1885380_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1885467_1886574_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1886539_1887844_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1887862_1888762_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1888945_1890103_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1890179_1891475_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1891588_1892128_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1892405_1892618_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1892637_1894668_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1894693_1894888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1895353_1897636_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1898045_1898345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1898629_1899043_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1899002_1899953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1900051_1901002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1901201_1902287_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1902302_1903064_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1903060_1903984_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1904082_1904607_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1904615_1905359_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1905454_1905694_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1905707_1905860_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1905945_1907436_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1907527_1908466_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1908462_1908639_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1908641_1909304_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1910925_1911069_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1911065_1912040_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1912206_1913157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1913153_1914428_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1914531_1915725_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1915721_1916375_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1916371_1917808_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1917795_1918155_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1918969_1919110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1919127_1920078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1921123_1922989_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1923246_1924767_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1924854_1925505_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1926453_1927749_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1927770_1928655_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1928753_1929629_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1929618_1929975_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1930105_1931080_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1931209_1931389_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1931486_1932011_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1932021_1932858_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1932970_1933342_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1933338_1933890_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1933905_1935597_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1935645_1936326_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1936573_1937038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1937207_1938137_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1938149_1938797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1938870_1940688_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1940771_1941722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1942374_1943325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1943343_1943691_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1943719_1945159_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1945177_1945573_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1945747_1946356_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1946368_1947187_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1947138_1948113_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1948141_1949203_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1949199_1951416_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1951429_1951888_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1952045_1952390_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1952546_1953452_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1953538_1954552_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1956531_1957548_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1957690_1959043_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1959217_1959514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1960651_1961602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	1973098	2037467	4105330	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1973098_1974049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1974270_1975221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1975319_1976285_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1976422_1977322_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1979916_1981404_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1981414_1982611_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1982683_1984003_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1983999_1984875_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1984905_1986054_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1986071_1986386_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1986407_1987130_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1987129_1987948_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1987952_1988480_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1988485_1989742_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1990100_1991240_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1991317_1992190_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1993060_1994011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1993970_1994606_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1994965_1996288_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1996606_1997428_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1998852_1999425_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|1999464_2001294_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2001256_2002315_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2002352_2002814_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2002898_2003645_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2005135_2008366_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2008432_2009764_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2010016_2010391_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2010493_2011672_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2011682_2012273_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2012383_2013190_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2013215_2014010_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2015010_2015985_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2016143_2016656_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2016812_2017784_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2019528_2020335_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2020331_2021633_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2021583_2022348_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2022461_2023232_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2023316_2024504_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2024576_2024951_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2025051_2026314_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2026310_2027168_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2027340_2028342_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2028793_2029744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2031307_2032459_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2032827_2033064_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2033127_2033295_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2033408_2035304_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2035467_2036418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2036516_2037467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	2168996	2226275	4105330	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2168996_2169947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2170045_2172040_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2172099_2173065_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2173054_2175916_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2175918_2176425_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2176529_2177738_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2177739_2178678_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2178839_2179313_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2179309_2180260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2180370_2180811_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2180939_2182169_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2182207_2183029_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2183082_2184234_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2184325_2184814_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2187364_2189914_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2189984_2192558_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2192823_2193024_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2193055_2193217_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2193274_2193613_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2193761_2194712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2195486_2196155_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2196136_2198092_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2198334_2199084_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2199096_2199960_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2199963_2201379_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2201512_2202241_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2202379_2202580_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2202755_2203154_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2203177_2204578_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2204696_2205449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2205737_2206415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2206441_2207221_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2207217_2208102_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2208119_2208899_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2208883_2209642_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2209779_2210415_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2210682_2211699_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2211796_2212837_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2212971_2214264_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2215623_2216007_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2216024_2216612_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2216649_2217600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2217698_2218259_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2218255_2218801_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2218996_2220025_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2220065_2221406_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2221514_2222519_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2222625_2225226_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2225324_2226275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	2474956	2533200	4105330	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2474956_2475907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2476386_2477043_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2477057_2478725_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2478727_2479357_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2479568_2480663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2480807_2481620_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2481623_2483207_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2483377_2484508_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2484694_2485771_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2485852_2486503_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2486517_2487921_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2488204_2489023_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2489019_2489724_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2490623_2491739_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2491772_2492147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2492169_2493327_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2493339_2493573_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2494207_2497177_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2497191_2497401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2497552_2498182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2498178_2500236_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2500292_2500973_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2500969_2501530_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2501536_2502634_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2502786_2503380_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2503376_2504669_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2504682_2505225_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2505234_2506071_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2506104_2507166_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2507207_2508260_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2508275_2508578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2508719_2509670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2509848_2511543_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2511539_2512625_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2512672_2513572_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2513582_2514227_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2515248_2518491_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2518501_2519656_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2519882_2520845_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_010931070.1|2520943_2521894_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2521992_2522943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2522952_2523642_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2523701_2524139_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2524184_2525078_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2525125_2526298_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2526294_2527449_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2527645_2527996_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2527985_2528420_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2528436_2529387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2529534_2530002_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2529982_2531140_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2531205_2532132_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2532249_2533200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	2575478	2641978	4105330	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575478_2576429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576798_2577371_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577373_2578384_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578376_2578877_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578887_2579229_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579297_2580032_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580048_2580318_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580340_2581129_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581175_2582192_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582408_2583851_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584029_2585649_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585769_2587590_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587668_2589201_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589234_2590881_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590950_2591973_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591990_2593124_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593126_2593816_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593815_2594601_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594644_2595409_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595447_2596869_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596934_2597639_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597686_2598106_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598118_2598526_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598709_2599420_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599546_2599837_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599854_2600337_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604842_2605997_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606302_2607319_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607565_2608354_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608420_2609101_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609097_2609868_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609966_2610917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610972_2611890_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611900_2613079_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613098_2614094_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615682_2616291_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616278_2617319_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617336_2618299_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618295_2619489_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619485_2620283_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620308_2621295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621313_2623353_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623554_2624235_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624248_2625160_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625156_2625735_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625873_2626779_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626786_2630206_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630193_2632794_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633749_2634382_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634775_2635534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635530_2636733_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636920_2637871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638778_2639924_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639910_2640666_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640782_2640962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641027_2641978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	2670093	2707505	4105330	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670093_2671044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671142_2672093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672185_2672725_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672831_2673176_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673233_2674682_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674869_2675205_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676832_2678011_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678093_2678594_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678703_2679405_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2679416_2679881_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679895_2680171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680167_2680944_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680972_2681800_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681925_2682396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682522_2683416_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683463_2684645_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684657_2685473_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2685606_2686134_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686130_2686628_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686775_2687153_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687374_2688325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688423_2689035_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689269_2690397_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690507_2691596_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691648_2692500_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692519_2693401_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693577_2694891_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695101_2695935_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695931_2696513_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696866_2697817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697832_2698948_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699050_2699977_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699976_2701215_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701211_2701979_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701979_2702681_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702762_2703209_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2704098_2704737_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705505_2706456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706554_2707505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	2806632	2861149	4105330	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806632_2807583_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807911_2808517_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808570_2809884_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809958_2810429_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810428_2811217_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811227_2812880_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812967_2813918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815079_2815586_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815582_2816347_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816362_2816647_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816711_2817701_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817872_2818802_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818773_2819460_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819493_2820039_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820083_2821349_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821345_2822248_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823429_2824374_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824468_2825986_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826027_2827656_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827763_2828645_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831757_2832132_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832156_2832495_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832538_2834173_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834211_2835558_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835665_2837087_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837156_2837741_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837843_2838794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838928_2840035_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840045_2841143_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841287_2842493_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842499_2843021_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843017_2843500_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843505_2843757_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843737_2844223_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844358_2847820_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847837_2848722_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848731_2849163_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849409_2849913_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849990_2851391_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851465_2852341_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852337_2853345_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853812_2854118_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854208_2854799_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854989_2856006_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856197_2858534_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858616_2859051_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859149_2860100_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860198_2861149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	2869174	2925960	4105330	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2869174_2870125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871831_2872098_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872805_2873144_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877697_2878300_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878396_2879686_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879743_2880475_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880471_2881275_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881271_2882360_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882356_2883286_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883434_2884580_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884601_2885552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885882_2889704_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889860_2890529_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890533_2892207_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892225_2893545_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893549_2895865_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895920_2898089_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898085_2903266_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903364_2903679_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903906_2904152_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904246_2904765_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904864_2906070_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906185_2907583_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907699_2908278_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908350_2909742_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909909_2910860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911140_2911761_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911757_2912171_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912167_2913211_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913266_2913455_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913464_2914229_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914319_2914976_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915067_2915826_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915851_2917453_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917653_2918658_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918758_2919022_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919139_2919916_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920506_2921457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923840_2924953_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925009_2925960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	2956346	3000037	4105330	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2956346_2957297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957417_2958314_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960591_2962817_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962981_2964070_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964026_2964680_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964727_2965525_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966056_2967007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967087_2968236_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968292_2969243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969341_2969647_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969675_2970110_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970111_2971356_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971352_2972063_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972077_2972989_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973351_2973756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973752_2974211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974217_2975126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975122_2975989_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975975_2976803_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976813_2977941_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979018_2980257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980298_2981561_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981567_2982320_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982371_2982557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982832_2983297_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983328_2983988_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984132_2986241_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986237_2987188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987291_2987912_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988015_2988756_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989890_2991015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991060_2991429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991670_2992621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993656_2994199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994584_2995535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995531_2996440_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996566_2997403_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997915_2999025_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|2999086_3000037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	3399843	3444915	4105330	transposase,tRNA	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3399843_3400794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401560_3402655_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402647_3403982_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403935_3404619_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3404644_3405808_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3405804_3406806_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406805_3407678_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407674_3408424_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408420_3409212_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409208_3410348_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410623_3411409_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411442_3412225_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412228_3412618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3413757_3414621_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3414656_3415745_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415741_3416692_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417045_3420024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420950_3421829_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423777_3424728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424724_3425192_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425234_3426005_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3426025_3426826_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426836_3428246_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428340_3429126_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429365_3430382_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430489_3430882_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431019_3431700_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431704_3432676_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432771_3433722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3435226_3435928_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3435927_3437352_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3438421_3439762_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3439877_3441641_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441752_3442631_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442743_3443559_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443562_3443814_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443898_3444915_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	3462659	3515064	4105330	transposase,tRNA	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010929632.1|3462659_3463676_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463771_3464482_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464478_3465468_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465563_3467195_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467197_3467935_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468090_3468963_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3469312_3470452_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470448_3471108_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471179_3471812_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471841_3472360_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472370_3473480_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473526_3474381_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474382_3475285_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476507_3477458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479212_3480202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480377_3481166_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481162_3482194_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482212_3482776_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482831_3484352_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484615_3485320_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3485327_3486056_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486170_3486545_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486587_3487877_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487873_3489043_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489039_3489879_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489938_3490874_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490886_3491837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491935_3492898_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492929_3493289_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493413_3494316_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494317_3496090_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496124_3496901_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498224_3499175_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3500026_3500347_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3500419_3501301_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3501417_3501660_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3501797_3502268_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3502280_3502820_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3502854_3504396_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3504494_3505400_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3505442_3506843_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3506852_3507275_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3507457_3508342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3508417_3509494_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3509800_3511903_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3511945_3514015_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3514113_3515064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	3532182	3585983	4105330	transposase,tRNA	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3532182_3533133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533473_3534424_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534522_3535473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535769_3536267_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536309_3538085_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538092_3538959_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538965_3539700_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540869_3541664_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541953_3542544_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542577_3543906_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543980_3545126_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545237_3546236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546198_3546633_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548149_3549034_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549030_3550236_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550232_3551093_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551205_3552996_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3553036_3553681_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3553702_3554011_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554176_3555463_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3556896_3557847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559798_3561013_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561118_3562108_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562104_3562713_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562725_3563355_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563351_3563972_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564003_3564795_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565646_3566102_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566120_3567047_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567100_3568387_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569317_3570190_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570186_3571137_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571235_3572186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3572290_3572521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3572647_3573037_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3573053_3575435_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3575427_3576804_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3576819_3577815_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3577833_3578826_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3579066_3579627_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3579631_3579958_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3579994_3580807_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3580817_3581900_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3581986_3583261_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3583983_3584934_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|3585032_3585983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013864	Bordetella pertussis strain J300 chromosome, complete genome	4105330	4004398	4069310	4105330	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4004398_4004884_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004972_4005110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005102_4006083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006349_4007159_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007198_4007879_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007872_4008331_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008342_4008705_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008787_4009471_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009526_4009835_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009853_4010168_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010164_4012639_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012646_4014038_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014034_4014220_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014198_4014900_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014896_4015718_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015698_4016823_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016815_4017835_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018040_4018931_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019175_4019967_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020049_4020424_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020401_4021811_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021803_4023186_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023520_4025125_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025202_4026174_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026184_4027111_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027501_4028452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028621_4029848_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030047_4030914_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030906_4031869_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031969_4032920_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033018_4033969_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034067_4035018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035014_4036508_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036504_4039612_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039608_4042677_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042673_4043924_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044104_4044857_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4044898_4045543_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045551_4046532_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046631_4047375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047457_4047805_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047902_4048745_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048789_4049677_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049703_4049892_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049989_4051447_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051433_4052960_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052978_4053446_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053445_4054468_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054588_4055329_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055383_4056484_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056485_4057676_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057795_4058812_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059130_4059802_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059798_4060707_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060918_4061566_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065426_4066494_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066504_4067314_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4067403_4068177_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068359_4069310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
