The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	27282	70036	4107428	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	77634	136107	4107428	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_077069170.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132699_132984_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	164892	225403	4107428	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	233335	286923	4107428	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	390856	448365	4107428	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417524_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	590419	651610	4107428	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591845_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624028_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639096_640449_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647292_648165_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	656934	703125	4107428	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691856_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	709291	763221	4107428	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761740_762148_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	885810	953786	4107428	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887023_888007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889605_890994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891024_892014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892124_893357_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893638_894439_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894461_896693_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906807_907014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1024377	1082462	4107428	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1024377_1025328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025426_1026167_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026361_1028398_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028415_1029426_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029543_1030737_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030766_1031540_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031536_1032727_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032752_1033691_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033687_1036036_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036190_1036832_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038161_1038314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038345_1038894_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038912_1039398_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039575_1040514_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040516_1040834_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040879_1041824_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043504_1044155_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044208_1044544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044540_1045401_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045417_1045699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045772_1046036_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046279_1047230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047528_1048266_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048701_1049025_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049059_1049620_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049740_1050616_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050628_1051576_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051677_1051971_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051997_1054055_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054069_1054570_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054643_1056350_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057213_1058266_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058318_1058708_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058716_1059349_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059448_1060465_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061295_1062303_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062299_1063943_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063939_1064827_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064967_1065441_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065430_1066453_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066449_1067877_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068814_1069831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070163_1071099_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071148_1073029_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073095_1073440_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073584_1074721_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074717_1075791_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075948_1077385_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077475_1078117_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078452_1079469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081511_1082462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1086508	1158529	4107428	transposase,holin,tRNA	Planktothrix_phage(18.18%)	57	NA	NA
WP_003819794.1|1086508_1086922_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086923_1087283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087325_1088870_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088953_1089784_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089818_1090973_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091015_1091888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092004_1094293_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095499_1095964_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095990_1096941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096958_1097096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097308_1098085_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098129_1098987_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099008_1100025_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100159_1101200_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101394_1103476_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103711_1105205_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105435_1106230_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106450_1107809_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107805_1108648_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108666_1110553_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110494_1110746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110790_1111423_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111441_1112044_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112195_1113146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113726_1114434_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114792_1115779_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115918_1116932_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116928_1117879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117991_1118450_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118486_1119800_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119817_1120189_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120185_1121649_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121789_1122518_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122499_1125349_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125561_1126512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126679_1127504_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127503_1128382_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129286_1130402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130430_1131225_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131221_1133087_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133165_1133798_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133794_1134097_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134139_1135660_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135666_1136422_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136451_1137556_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137658_1139359_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139340_1140318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140327_1141608_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141600_1142296_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142329_1143157_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143438_1146669_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147404_1151331_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153230_1155027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155026_1155995_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156064_1156910_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156977_1157532_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157578_1158529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1176316	1236202	4107428	transposase,tRNA	Bacillus_phage(25.0%)	44	NA	NA
WP_005012067.1|1176316_1177267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177396_1178380_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178434_1179157_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180635_1181991_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182071_1184447_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184611_1186687_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186748_1187543_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187650_1188613_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188600_1189356_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189463_1191101_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191168_1191906_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192008_1192584_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192756_1193293_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193325_1193640_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193655_1194501_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194539_1195919_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195996_1196878_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196976_1197927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197923_1198334_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198441_1199296_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199288_1200251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200296_1201421_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201526_1202405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202529_1203309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203462_1204884_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205318_1207016_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207242_1208184_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208510_1209257_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209264_1210191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210312_1211230_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211269_1212223_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212247_1212826_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214499_1215108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215185_1215539_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215622_1216612_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216814_1217765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217851_1218802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218798_1219749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220009_1221038_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221117_1222416_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222412_1222994_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223306_1227353_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227593_1235255_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235251_1236202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1270677	1327888	4107428	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1270677_1271628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275374_1275986_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276208_1277669_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277765_1279358_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279711_1279969_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279970_1281311_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281406_1282096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282108_1283539_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285263_1286085_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286095_1287667_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287695_1288673_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288699_1289503_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289499_1290294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290301_1291537_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291550_1291964_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292713_1293664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294285_1296013_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296124_1297483_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297775_1298726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298766_1299837_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299859_1300738_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300909_1301881_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302043_1302886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303047_1303728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303721_1304891_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304887_1305919_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305986_1307204_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307238_1308771_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308851_1309475_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309505_1310117_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310152_1310623_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311054_1312059_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312095_1313610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313613_1314573_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314601_1315405_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315406_1317041_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317124_1318186_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318384_1318654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318657_1319182_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319597_1320548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320544_1321579_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321687_1322326_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322620_1322848_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322970_1323684_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323928_1324879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325018_1325264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325378_1326827_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326937_1327888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1418121	1470275	4107428	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1418121_1419072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419238_1419592_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419604_1419967_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420008_1420434_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420636_1421893_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422091_1423072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423221_1424463_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424561_1425512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425520_1426216_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429037_1429637_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429647_1431813_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431836_1433621_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433620_1433710_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434404_1434677_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434676_1436743_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436739_1437690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437788_1438739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438854_1439187_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439183_1439870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439856_1440816_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440848_1443218_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443217_1443850_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443951_1445292_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445338_1446694_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446984_1447221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447408_1447726_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447998_1448514_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448784_1449540_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449878_1450085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450092_1450752_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451046_1453251_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453361_1454585_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454707_1455682_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455749_1456943_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456957_1457758_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457754_1459611_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459607_1460213_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460231_1461617_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462343_1463570_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463658_1464441_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464539_1465490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465516_1466290_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466301_1467543_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469324_1470275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1514200	1582285	4107428	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514200_1514689_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514806_1515385_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515490_1515859_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515957_1516908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516914_1518027_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518713_1519916_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520119_1522780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522792_1526197_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526864_1529090_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529136_1529463_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529513_1530122_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530220_1531171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531240_1532005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532001_1532538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532704_1533556_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533615_1534242_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534238_1535189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535287_1536400_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536389_1537391_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537496_1539008_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539004_1540309_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540420_1540981_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541248_1541803_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542258_1542474_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542728_1545326_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545322_1546510_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547167_1547782_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547870_1548992_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549009_1549915_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550807_1551758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551939_1552692_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552760_1553420_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553416_1554145_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554157_1556437_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556461_1556665_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556706_1557339_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557474_1558392_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558388_1559102_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559339_1560110_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560114_1560714_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560958_1562449_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562507_1562792_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563357_1564284_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564420_1565161_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565327_1566704_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566885_1567791_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569442_1571245_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571362_1572013_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572111_1573062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573083_1574304_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574489_1575902_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575965_1577033_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577032_1578520_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578529_1579474_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579633_1580332_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580409_1581315_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581334_1582285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1618234	1673825	4107428	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618234_1619185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619243_1620017_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620009_1621566_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621562_1622513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623839_1624442_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624681_1625383_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625376_1626159_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626343_1627294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627392_1628130_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628319_1629078_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629124_1630114_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630291_1631260_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632799_1633768_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633776_1634718_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635191_1636202_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636192_1637707_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637703_1639050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639052_1640087_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640136_1641762_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642314_1643265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643369_1644317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644370_1646185_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646177_1646852_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646981_1650056_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650069_1650369_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650683_1651307_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651550_1652420_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652397_1653342_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653427_1654354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654466_1655246_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655236_1656433_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656463_1657414_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657635_1658325_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658389_1659145_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659196_1660189_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660198_1661152_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661267_1662230_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663631_1664060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664056_1665007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665300_1666023_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666461_1667649_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667652_1668003_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669752_1670724_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670737_1671451_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671455_1672373_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672479_1672776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672874_1673825_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1831591	1890861	4107428	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831591_1832542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832666_1833476_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833676_1834627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835900_1837118_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838174_1839077_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839153_1840026_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840156_1840525_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840582_1841629_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841824_1843081_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843085_1844423_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844572_1845529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845631_1846564_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846679_1847000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846992_1847352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847399_1848974_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849026_1849971_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849988_1850819_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850811_1852446_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852442_1853798_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854704_1856282_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856285_1857560_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857657_1858032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859747_1860881_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860918_1861524_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861520_1862339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862410_1865035_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865021_1865276_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865342_1865924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866227_1866488_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866653_1867277_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867276_1868050_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868046_1869255_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869280_1869754_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869827_1870778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870876_1871827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871925_1873275_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874040_1874796_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874888_1877771_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878093_1878519_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878546_1879695_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879691_1880198_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880213_1881500_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881549_1882845_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882846_1883485_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883490_1884648_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884674_1886030_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886033_1887104_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887242_1887479_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887566_1888673_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888638_1889943_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889961_1890861_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1901101	1945424	4107428	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901101_1902052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902150_1903101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903300_1904386_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904401_1905163_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905159_1906083_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906181_1906706_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906714_1907458_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907553_1907793_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907806_1907959_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908044_1909535_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909626_1910565_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910561_1910738_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910740_1911403_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913024_1913168_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913164_1914139_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914305_1915256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915252_1916527_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916630_1917824_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917820_1918474_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918470_1919907_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919894_1920254_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921068_1921209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921226_1922177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923222_1925088_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925345_1926866_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926953_1927604_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928552_1929848_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929869_1930754_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930852_1931728_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931717_1932074_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932204_1933179_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933308_1933488_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933585_1934110_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934120_1934957_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935069_1935441_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935437_1935989_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936004_1937696_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937744_1938425_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938672_1939137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939306_1940236_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940248_1940896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940969_1942787_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942870_1943821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944473_1945424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	1975197	2039566	4107428	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975197_1976148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976369_1977320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977418_1978384_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978521_1979421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982015_1983503_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983513_1984710_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984782_1986102_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986098_1986974_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987004_1988153_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988170_1988485_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988506_1989229_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989228_1990047_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990051_1990579_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990584_1991841_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992199_1993339_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993416_1994289_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995159_1996110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996069_1996705_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997064_1998387_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998705_1999527_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000951_2001524_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001563_2003393_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003355_2004414_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004451_2004913_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004997_2005744_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007234_2010465_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010531_2011863_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012115_2012490_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012592_2013771_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013781_2014372_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014482_2015289_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015314_2016109_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017109_2018084_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018242_2018755_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018911_2019883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021627_2022434_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022430_2023732_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023682_2024447_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024560_2025331_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025415_2026603_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026675_2027050_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027150_2028413_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028409_2029267_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029439_2030441_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030892_2031843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033406_2034558_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034926_2035163_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035226_2035394_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035507_2037403_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037566_2038517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038615_2039566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	2171095	2220748	4107428	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171095_2172046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172144_2174139_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174198_2175164_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175153_2178015_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178017_2178524_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178628_2179837_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179838_2180777_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180938_2181412_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181408_2182359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182469_2182910_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183038_2184268_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184306_2185128_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185181_2186333_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186424_2186913_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189463_2192013_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192083_2194657_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194922_2195123_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195154_2195316_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195373_2195712_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195860_2196811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197585_2198254_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198235_2200191_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200433_2201183_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201195_2202059_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202062_2203478_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203611_2204340_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204478_2204679_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204854_2205253_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205276_2206677_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206795_2207548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207836_2208514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208540_2209320_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209316_2210201_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210218_2210998_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210982_2211741_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211878_2212514_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212781_2213798_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213895_2214936_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215070_2216363_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217722_2218106_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218123_2218711_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218748_2219699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219797_2220748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	2460207	2526091	4107428	transposase,protease,tRNA	Planktothrix_phage(22.22%)	60	NA	NA
WP_004566381.1|2460207_2461695_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2461732_2462791_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2462790_2463291_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2463303_2463903_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2463899_2464400_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2464401_2465631_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2465820_2466060_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2466242_2466995_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2466996_2467932_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2468013_2469000_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2468999_2470058_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2470114_2470297_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2470348_2470942_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2471050_2471650_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2471646_2472357_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2472358_2473186_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2475002_2476244_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2476255_2477029_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2477055_2478006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478485_2479142_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479156_2480824_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480826_2481456_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481667_2482762_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482906_2483719_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483722_2485306_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485476_2486607_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486793_2487870_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487951_2488602_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488616_2490020_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490303_2491122_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2491118_2491823_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492722_2493838_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493871_2494246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494268_2495426_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495438_2495672_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496306_2499276_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499290_2499500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499651_2500281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500277_2502335_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502391_2503072_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503068_2503629_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503635_2504733_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504885_2505479_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505475_2506768_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506781_2507324_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507333_2508170_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508203_2509265_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509306_2510359_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510374_2510677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510818_2511769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2511867_2512818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2512996_2514691_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514687_2515773_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2515820_2516720_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516730_2517375_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518396_2521639_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521649_2522804_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523030_2523993_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524091_2525042_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525140_2526091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	2578626	2645126	4107428	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578626_2579577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579946_2580519_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580521_2581532_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581524_2582025_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582035_2582377_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2582445_2583180_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583196_2583466_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583488_2584277_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584323_2585340_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585556_2586999_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587177_2588797_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2588917_2590738_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2590816_2592349_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2592382_2594029_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594098_2595121_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595138_2596272_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596274_2596964_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596963_2597749_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597792_2598557_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598595_2600017_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600082_2600787_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2600834_2601254_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601266_2601674_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2601857_2602568_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602694_2602985_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603002_2603485_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2607990_2609145_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609450_2610467_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610713_2611502_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611568_2612249_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612245_2613016_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2613114_2614065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614120_2615038_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615048_2616227_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616246_2617242_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2618830_2619439_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619426_2620467_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620484_2621447_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621443_2622637_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622633_2623431_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623456_2624443_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624461_2626501_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2626702_2627383_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627396_2628308_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628304_2628883_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629021_2629927_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629934_2633354_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633341_2635942_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636897_2637530_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637923_2638682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2638678_2639881_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640068_2641019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641926_2643072_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643058_2643814_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643930_2644110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644175_2645126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	2673241	2710653	4107428	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2673241_2674192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2674290_2675241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2675333_2675873_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2675979_2676324_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2676381_2677830_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2678017_2678353_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2679980_2681159_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2681241_2681742_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2681851_2682553_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2682564_2683029_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2683043_2683319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2683315_2684092_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2684120_2684948_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2685073_2685544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2685670_2686564_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2686611_2687793_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2687805_2688621_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2688754_2689282_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2689278_2689776_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2689923_2690301_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2690522_2691473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2691571_2692183_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2692417_2693545_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2693655_2694744_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2694796_2695648_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2695667_2696549_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2696725_2698039_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2698249_2699083_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2699079_2699661_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2700014_2700965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2700980_2702096_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2702198_2703125_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2703124_2704363_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2704359_2705127_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2705127_2705829_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2705910_2706357_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2707246_2707885_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2708653_2709604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2709702_2710653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	2809780	2864297	4107428	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2809780_2810731_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811059_2811665_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811718_2813032_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813106_2813577_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813576_2814365_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814375_2816028_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816115_2817066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818227_2818734_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818730_2819495_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819510_2819795_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819859_2820849_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821020_2821950_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821921_2822608_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822641_2823187_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823231_2824497_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824493_2825396_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826577_2827522_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827616_2829134_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829175_2830804_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830911_2831793_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834905_2835280_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835304_2835643_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835686_2837321_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837359_2838706_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838813_2840235_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840304_2840889_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2840991_2841942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842076_2843183_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843193_2844291_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844435_2845641_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845647_2846169_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846165_2846648_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846653_2846905_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846885_2847371_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847506_2850968_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2850985_2851870_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851879_2852311_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852557_2853061_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853138_2854539_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854613_2855489_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855485_2856493_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856960_2857266_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857356_2857947_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858137_2859154_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859345_2861682_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861764_2862199_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862297_2863248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863346_2864297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	2872322	2929107	4107428	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2872322_2873273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874979_2875246_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875953_2876292_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880844_2881447_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881543_2882833_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882890_2883622_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883618_2884422_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884418_2885507_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885503_2886433_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886581_2887727_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887748_2888699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2889029_2892851_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893007_2893676_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893680_2895354_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895372_2896692_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896696_2899012_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899067_2901236_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901232_2906413_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906511_2906826_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907053_2907299_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907393_2907912_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908011_2909217_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909332_2910730_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910846_2911425_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911497_2912889_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913056_2914007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914287_2914908_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914904_2915318_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915314_2916358_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916413_2916602_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916611_2917376_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917466_2918123_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918214_2918973_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2918998_2920600_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920800_2921805_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921905_2922169_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922286_2923063_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923653_2924604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2926987_2928100_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928156_2929107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	2959493	3003184	4107428	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2959493_2960444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2960564_2961461_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963738_2965964_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966128_2967217_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967173_2967827_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967874_2968672_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969203_2970154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970234_2971383_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971439_2972390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972488_2972794_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972822_2973257_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973258_2974503_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974499_2975210_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975224_2976136_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976498_2976903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976899_2977358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977364_2978273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978269_2979136_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979122_2979950_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979960_2981088_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982165_2983404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983445_2984708_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984714_2985467_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985518_2985704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985979_2986444_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986475_2987135_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987279_2989388_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989384_2990335_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990438_2991059_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991162_2991903_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993037_2994162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994207_2994576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994817_2995768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996803_2997346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997543_2997714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997731_2998682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998678_2999587_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999713_3000550_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001062_3002172_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002233_3003184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	3383129	3436870	4107428	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3383129_3384080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384484_3385129_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385153_3385738_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385838_3386456_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386458_3388174_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388170_3388479_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388495_3389113_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389157_3389460_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389560_3390415_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390602_3390827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3390996_3391269_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391686_3392094_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392463_3393258_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393358_3394594_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394662_3395679_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395690_3397067_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397063_3398260_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398256_3399795_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399791_3401051_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3402991_3403942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404708_3405803_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405795_3407130_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407083_3407767_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3407792_3408956_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3408952_3409954_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409953_3410826_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410822_3411572_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411568_3412360_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412356_3413496_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413771_3414557_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414590_3415373_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415376_3415766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416905_3417769_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417804_3418893_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418889_3419840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420193_3423172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424098_3424977_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426925_3427876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427872_3428340_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428382_3429153_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429173_3429974_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429984_3431394_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431488_3432274_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432513_3433530_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433637_3434030_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434167_3434848_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434852_3435824_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435919_3436870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	3443025	3502323	4107428	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3443025_3444789_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444900_3445779_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445891_3446707_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446710_3446962_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447046_3448063_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448393_3448615_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450975_3451893_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452390_3453599_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453678_3455250_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455367_3456303_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456491_3457436_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458003_3463721_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463726_3464854_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464909_3465536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465807_3466824_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466919_3467630_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467626_3468616_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468711_3470343_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470345_3471083_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471238_3472111_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472460_3473600_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473596_3474256_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474327_3474960_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474989_3475508_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475518_3476628_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476674_3477529_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477530_3478433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479655_3480606_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482360_3483350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483525_3484314_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484310_3485342_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485360_3485924_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485979_3487500_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487763_3488468_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488475_3489204_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489318_3489693_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489735_3491025_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491021_3492191_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492187_3493027_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493086_3494022_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494034_3494985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495083_3496046_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496077_3496437_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496561_3497464_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497465_3499238_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499272_3500049_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501372_3502323_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	3517261	3575334	4107428	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517261_3518212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518340_3519474_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519517_3520423_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520425_3522126_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522122_3523043_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523050_3524028_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524086_3525121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3527095_3527332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527458_3528322_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528410_3529232_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529311_3530049_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530045_3531038_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3531190_3531814_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531858_3533007_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535330_3536281_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536621_3537572_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537670_3538621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538917_3539415_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539457_3541233_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541240_3542107_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542113_3542848_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544017_3544812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545101_3545692_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545725_3547054_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547128_3548274_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548385_3549384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549346_3549781_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551297_3552182_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552178_3553384_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553380_3554241_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554353_3556144_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3556184_3556829_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556850_3557159_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557324_3558611_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560044_3560995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562946_3564161_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564266_3565256_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565252_3565861_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565873_3566503_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566499_3567120_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567151_3567943_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568794_3569250_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569268_3570195_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570248_3571535_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572465_3573338_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573334_3574285_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574383_3575334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013863	Bordetella pertussis strain J296 chromosome, complete genome	4107428	4006496	4071408	4107428	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4006496_4006982_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007070_4007208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007200_4008181_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008447_4009257_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009296_4009977_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009970_4010429_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010440_4010803_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010885_4011569_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011624_4011933_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011951_4012266_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012262_4014737_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014744_4016136_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016132_4016318_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016296_4016998_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016994_4017816_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017796_4018921_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018913_4019933_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020138_4021029_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021273_4022065_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022147_4022522_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022499_4023909_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023901_4025284_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025618_4027223_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027300_4028272_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028282_4029209_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029599_4030550_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030719_4031946_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032145_4033012_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033004_4033967_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034067_4035018_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035116_4036067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036165_4037116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037112_4038606_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038602_4041710_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041706_4044775_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044771_4046022_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046202_4046955_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046996_4047641_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047649_4048630_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048729_4049473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049555_4049903_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050000_4050843_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050887_4051775_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051801_4051990_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052087_4053545_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053531_4055058_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055076_4055544_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055543_4056566_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056686_4057427_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057481_4058582_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058583_4059774_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059893_4060910_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061228_4061900_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061896_4062805_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063016_4063664_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067524_4068592_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068602_4069412_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069501_4070275_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4070457_4071408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
