The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	27282	70036	4105331	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	77634	136108	4105331	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_077069201.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	164894	225405	4105331	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	233337	286925	4105331	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077069018.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278109_278256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	390858	448367	4105331	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	589372	650563	4105331	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589372_590323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590819_591689_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591685_592507_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592707_593199_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593217_594291_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594337_595441_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595516_596137_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596157_596667_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596721_596973_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597036_598170_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598177_598564_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598560_601080_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601508_601847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601843_602350_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602411_603212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603322_604264_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604357_605893_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607572_609423_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609426_610260_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610259_611201_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611452_612424_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612565_614854_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615159_616068_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616122_617088_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617162_618824_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618895_619606_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619572_619737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619754_620705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621403_621787_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621844_622447_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622464_622866_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622999_623893_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623889_624471_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625265_626000_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626040_627090_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627237_627816_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628202_629180_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629273_633668_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633868_634717_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634875_635688_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635743_636694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636792_637593_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637654_638038_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638049_639483_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639689_640019_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640021_640771_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640953_641874_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641920_642133_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642155_642578_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642594_643695_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643791_645309_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645384_646224_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646245_647127_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647208_648303_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648596_649547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649621_650563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	655887	702078	4105331	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655887_656913_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656953_657193_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657262_658852_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658851_659400_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659480_660053_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660071_660983_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661056_662025_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662147_663221_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663225_665046_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665122_666073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666161_666497_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666630_667281_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667302_668721_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668790_669546_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669514_670273_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670283_671165_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671181_671889_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671891_672650_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672859_674602_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674594_675119_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675158_675953_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676120_677194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677292_678243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678494_678701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678772_679384_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679938_680190_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680182_680872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680889_681111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681128_682079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682718_683204_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683190_684468_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684470_685889_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685917_686973_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686978_687221_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687343_687946_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688374_689325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689999_690251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690313_690796_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690797_690998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690997_691393_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691389_691788_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691784_692207_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692214_692715_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692969_693488_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693497_693827_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693844_694135_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694160_696773_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696782_697142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697209_697743_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697739_698129_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698121_702078_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	708244	762174	4105331	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708244_709975_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710027_710456_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710458_711139_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711138_711597_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711633_712608_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712624_713941_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713972_714470_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714556_715246_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715245_716295_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716291_717086_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717254_717605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717580_718138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719267_720218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722355_723585_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723587_725030_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725134_726280_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726311_727109_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727133_728693_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728689_731062_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731171_732275_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732274_732967_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733110_733812_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733796_734174_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734905_735856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736015_736888_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737228_737447_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737486_738866_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738907_740305_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740344_741997_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742000_742885_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742884_743826_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743904_745524_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745690_746506_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746573_747143_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747143_748094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748748_749846_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749879_751145_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751302_752253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752496_753087_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753102_755547_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755666_756638_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756769_757294_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757253_758204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758425_760621_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760693_761122_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761223_762174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	853052	902316	4105331	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|853052_854003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854020_854575_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854576_855011_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855007_855442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855425_856229_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856245_857061_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857057_857873_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858019_858721_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858748_860707_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860789_861740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861960_862629_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862752_863859_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863871_866985_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866981_868475_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868489_869161_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869204_869699_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869839_870487_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870590_872639_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872635_874648_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874673_876008_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876116_877109_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877175_879260_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879284_880256_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880384_881416_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881419_882571_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882741_883665_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883742_884567_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884763_885780_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885976_886960_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888558_889947_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889977_890967_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891077_892310_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892591_893392_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893414_895646_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896433_896880_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896901_897648_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897791_898769_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899402_900014_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900007_901225_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901365_902316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	911928	976868	4105331	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|911928_912879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912875_914708_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915106_915766_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915859_916006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916114_916282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916293_916974_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917255_917972_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917986_919288_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921432_924321_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924544_925897_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925925_926447_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926443_927898_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927932_928181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928286_929162_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929187_930243_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930255_931047_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931079_932450_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933626_934577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934629_934851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935010_935223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935342_936461_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936966_937218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937330_938281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938277_938661_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938715_940530_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940679_941507_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941552_942533_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942529_942742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942738_943920_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944083_944818_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944819_947432_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947567_949481_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950096_950507_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950604_951690_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951788_952739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952735_953710_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953834_954746_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955022_955415_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955544_956495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956524_956707_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957479_958661_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958876_959554_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|959550_960276_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|960401_960983_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961353_964035_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|964034_965168_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965160_966246_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966332_967232_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967228_968557_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968571_969243_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|969430_971146_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971147_971507_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971698_972013_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972055_973276_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973272_974214_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974210_975200_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975234_975819_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975917_976868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	996268	1068784	4105331	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996268_997219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997323_998373_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998510_999527_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001035_1001608_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001667_1002399_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002450_1003368_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004175_1007355_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007351_1008734_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008803_1009055_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009200_1009815_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1010001_1012116_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012191_1013043_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013039_1013666_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013662_1015417_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015709_1018415_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018427_1020089_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020101_1021892_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022113_1023289_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930130.1|1024379_1025120_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025314_1027351_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027368_1028379_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028496_1029690_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029719_1030493_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030489_1031680_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031705_1032644_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032640_1034989_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035143_1035785_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035888_1037022_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037114_1037267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037298_1037847_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037865_1038351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038528_1039467_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039469_1039787_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039832_1040777_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042457_1043108_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043161_1043497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043493_1044354_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044370_1044652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044725_1044989_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045232_1046183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046481_1047219_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047654_1047978_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048012_1048573_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048693_1049569_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049581_1050529_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050630_1050924_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050950_1053008_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053022_1053523_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053596_1055303_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056166_1057219_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057271_1057661_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057669_1058302_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058401_1059418_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1060206_1061256_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061252_1062896_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062892_1063780_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063920_1064394_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064383_1065406_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065402_1066830_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067767_1068784_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1072537	1134613	4105331	protease,transposase,tRNA,holin	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1072537_1073674_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073670_1074744_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074901_1076338_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076428_1077070_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077405_1078422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080464_1081415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082617_1084039_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087906_1088737_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094452_1094917_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094943_1095894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095911_1096049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097082_1097940_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107619_1109506_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109447_1109699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109743_1110376_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110394_1110997_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111148_1112099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112679_1113387_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115881_1116832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116849_1116990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116944_1117403_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117439_1118753_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118770_1119142_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119138_1120602_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120742_1121471_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121452_1124302_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124514_1125465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125632_1126457_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126456_1127335_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128239_1129355_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129383_1130178_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130174_1132040_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132118_1132751_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132747_1133050_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133092_1134613_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 13
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1156531	1218702	4105331	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1156531_1157482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157580_1158204_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158377_1160660_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160814_1163511_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163636_1164125_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166535_1169406_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169451_1170666_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170895_1172323_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172420_1173512_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173524_1174283_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174370_1175273_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175269_1176220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176349_1177333_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177387_1178110_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179588_1180944_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181024_1183400_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183564_1185640_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185701_1186502_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186603_1187566_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187553_1188309_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188416_1190054_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190121_1190859_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190961_1191537_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191709_1192246_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192248_1192593_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192608_1193454_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193492_1194872_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194949_1195831_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195929_1196880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196876_1197287_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197394_1198249_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198241_1199204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199249_1200374_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200479_1201358_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201482_1202262_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202415_1203837_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204271_1205969_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206195_1207137_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207463_1208210_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208217_1209144_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209265_1210183_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210222_1211176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211200_1211779_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213452_1214061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214138_1214492_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214575_1215565_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1215561_1215750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215767_1216718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216804_1217755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217751_1218702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1269630	1326841	4105331	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269630_1270581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274327_1274939_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275161_1276622_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276718_1278311_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278664_1278922_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278923_1280264_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280359_1281049_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281061_1282492_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284216_1285038_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285048_1286620_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286648_1287626_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287652_1288456_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288452_1289247_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289254_1290490_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290482_1290917_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291666_1292617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293238_1294966_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295077_1296436_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296492_1296711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296728_1297679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297719_1298790_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298812_1299691_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299862_1300834_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300996_1301839_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302000_1302681_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302674_1303844_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303840_1304872_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304915_1306157_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306191_1307724_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307804_1308428_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308458_1309070_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309105_1309576_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310007_1311012_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311048_1312563_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312566_1313526_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313554_1314358_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314359_1315994_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316077_1317139_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317337_1317607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317610_1318135_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318550_1319501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319497_1320532_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320640_1321279_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321573_1321801_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321923_1322637_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322881_1323832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323935_1324217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324331_1325780_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325890_1326841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1417074	1469227	4105331	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1417074_1418025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418042_1418195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418191_1418545_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418557_1418920_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418961_1419387_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419589_1420846_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421044_1422025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422174_1423416_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423514_1424465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424473_1425169_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427990_1428590_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428600_1430766_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430789_1432574_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432573_1432663_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433357_1433630_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433629_1435696_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435692_1436643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436741_1437692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437807_1438140_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438136_1438823_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1438809_1439769_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1439810_1442171_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442170_1442803_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442904_1444245_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444291_1445647_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1445772_1446417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446361_1446679_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446951_1447467_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447560_1447722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447737_1448493_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448831_1449038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449045_1449705_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449999_1452204_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452314_1453538_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453660_1454635_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454702_1455896_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455910_1456711_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456707_1458564_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458560_1459166_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459184_1460570_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461295_1462522_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1462610_1463393_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463491_1464442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464468_1465242_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465253_1466495_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468276_1469227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1513152	1581237	4105331	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1513152_1513641_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513758_1514337_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514442_1514811_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514908_1515859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515865_1516978_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517664_1518867_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1518902_1519049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1519070_1521731_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1521743_1525148_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525815_1528041_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528087_1528414_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528464_1529073_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529171_1530122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530191_1530956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1530952_1531552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531655_1532507_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532566_1533193_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533189_1534140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534238_1535351_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535340_1536342_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536447_1537959_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537955_1539260_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539371_1539932_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540199_1540754_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541209_1541425_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541679_1544277_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544273_1545461_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1546119_1546734_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1546822_1547950_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547961_1548867_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549759_1550710_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550891_1551644_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551712_1552372_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552368_1553097_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553109_1555389_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555413_1555617_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555658_1556291_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556426_1557344_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557340_1558054_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558291_1559062_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559066_1559666_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559910_1561401_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561459_1561744_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1561881_1562037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1562309_1563236_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563372_1564113_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564279_1565656_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565837_1566743_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568394_1570197_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1570323_1570965_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571063_1572014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572035_1573256_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573441_1574854_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574917_1575985_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575984_1577472_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577481_1578426_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578585_1579284_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579361_1580267_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580286_1581237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1617186	1672777	4105331	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617186_1618137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618195_1618969_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618961_1620518_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620514_1621465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622791_1623394_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623633_1624335_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624328_1625111_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625295_1626246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626344_1627082_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627271_1628030_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628076_1629066_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629243_1630212_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631751_1632720_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632728_1633670_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634143_1635154_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635144_1636659_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636655_1638002_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1638004_1639039_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639088_1640714_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641266_1642217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642321_1643269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643322_1645137_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645129_1645804_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645933_1649008_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649021_1649321_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649635_1650259_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1650502_1651372_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651349_1652294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652379_1653306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653418_1654198_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654188_1655385_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655415_1656366_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656587_1657277_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657341_1658097_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658148_1659141_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659150_1660104_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660219_1661182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662583_1663012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663008_1663959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1664252_1664990_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665413_1666601_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1666604_1666985_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668704_1669676_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669689_1670403_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670407_1671325_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671431_1671728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671826_1672777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1830543	1889813	4105331	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830543_1831494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831618_1832428_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1832628_1833579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834852_1836070_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837126_1838029_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838105_1838978_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839108_1839477_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839534_1840581_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840776_1842033_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842037_1843375_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843524_1844481_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844583_1845516_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845631_1845952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845944_1846304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846351_1847926_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847978_1848923_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848940_1849771_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849763_1851398_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851394_1852750_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853656_1855234_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855237_1856512_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856609_1856984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858699_1859833_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859870_1860476_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860472_1861291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861362_1863987_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863973_1864228_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864294_1864876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865179_1865440_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865605_1866229_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866228_1867002_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1866998_1868207_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868232_1868706_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868779_1869730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869828_1870779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870877_1872227_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1872992_1873748_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873840_1876723_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877045_1877471_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877498_1878647_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878643_1879150_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1879156_1880452_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1880510_1881797_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881798_1882437_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1882439_1883600_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883626_1884982_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884985_1886056_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886194_1886431_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886518_1887625_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887590_1888895_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888913_1889813_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1900053	1944375	4105331	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1900053_1901004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901102_1902053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902252_1903338_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903353_1904115_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1904111_1905071_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1905133_1905634_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905666_1906410_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906505_1906745_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906758_1906911_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1906996_1908487_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908578_1909517_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909513_1909690_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909692_1910355_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911976_1912120_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912116_1913091_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1912985_1913240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1913257_1914208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914204_1915479_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915582_1916776_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916772_1917426_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917422_1918859_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918846_1919206_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1920020_1920161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920178_1921129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922174_1924040_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924297_1925818_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925905_1926556_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1927504_1928800_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928821_1929706_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929804_1930680_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930669_1931026_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931156_1932131_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932260_1932440_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932537_1933062_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933072_1933909_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934021_1934393_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934389_1934941_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934956_1936648_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936696_1937377_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937624_1938089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938258_1939188_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939200_1939848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939921_1941739_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941822_1942773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943424_1944375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	1974148	2038517	4105331	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974148_1975099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975320_1976271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976369_1977335_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977472_1978372_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980966_1982454_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982464_1983661_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983733_1985053_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985049_1985925_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985955_1987104_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987121_1987436_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987457_1988180_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988179_1988998_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989002_1989530_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989535_1990792_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991150_1992290_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992367_1993240_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994110_1995061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995020_1995656_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996015_1997338_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997656_1998478_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999902_2000475_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000514_2002344_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002306_2003365_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003402_2003864_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003948_2004695_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006185_2009416_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009482_2010814_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011066_2011441_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011543_2012722_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012732_2013323_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013433_2014240_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014265_2015060_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016060_2017035_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017193_2017706_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017862_2018834_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020578_2021385_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2021381_2022683_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2022633_2023398_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023511_2024282_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024366_2025554_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025626_2026001_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2026101_2027364_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027360_2028218_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028390_2029392_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029843_2030794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2032309_2033509_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033877_2034114_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034177_2034345_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2034458_2036264_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2036517_2037468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037566_2038517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	2170045	2219698	4105331	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170045_2170996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171094_2173089_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173148_2174114_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174103_2176965_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176967_2177474_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177578_2178787_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178788_2179727_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179888_2180362_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180358_2181309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181419_2181860_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181988_2183218_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183256_2184078_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184131_2185283_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185374_2185863_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188413_2190963_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191033_2193607_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193872_2194073_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194104_2194266_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194323_2194662_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194810_2195761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196535_2197204_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2197185_2199201_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2199383_2200133_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200145_2201009_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201012_2202428_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202561_2203290_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203428_2203629_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203804_2204203_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204226_2205627_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205745_2206498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2206786_2207386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207490_2208270_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208266_2209151_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209168_2209948_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209932_2210691_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2210816_2211464_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211731_2212748_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212845_2213886_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214020_2215313_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216672_2217056_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217073_2217661_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217698_2218649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218747_2219698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	2476004	2534248	4105331	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2476004_2476955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477434_2478091_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478105_2479773_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479775_2480405_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480616_2481711_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481855_2482668_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2482671_2484375_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2484425_2485556_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485742_2486819_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486900_2487551_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487565_2488969_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489252_2490071_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2490067_2490772_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491671_2492787_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492820_2493195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493217_2494375_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494387_2494621_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495255_2498225_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498239_2498449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498600_2499230_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2499226_2501317_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501340_2502021_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502017_2502578_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502584_2503682_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503834_2504428_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504424_2505717_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505730_2506273_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506282_2507119_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507152_2508214_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508255_2509308_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509323_2509626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509767_2510718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510735_2510900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510896_2512591_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512587_2513673_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513720_2514620_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514630_2515275_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516296_2519539_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519549_2520704_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520930_2521893_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2521991_2522942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523040_2523991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524000_2524690_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524749_2525187_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2525232_2526126_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526173_2527346_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527342_2528497_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2528693_2529044_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529033_2529468_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529484_2530435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530582_2531050_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531030_2532188_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532253_2533180_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533297_2534248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	2576526	2643026	4105331	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576526_2577477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577846_2578419_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578421_2579432_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579424_2579925_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579935_2580277_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2580288_2581080_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581096_2581366_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581388_2582177_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582223_2583240_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583456_2584899_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585077_2586697_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586817_2588638_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588716_2590249_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2590282_2591929_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2591998_2593021_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593038_2594172_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594174_2594864_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594863_2595649_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595692_2596457_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596495_2597917_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597982_2598687_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598734_2599154_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599166_2599574_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599757_2600468_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600594_2600885_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600902_2601385_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605890_2607045_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607350_2608367_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608613_2609402_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609468_2610149_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610145_2610916_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611014_2611965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612020_2612938_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612948_2614127_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614146_2615142_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616730_2617339_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617326_2618367_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618384_2619347_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619343_2620537_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620533_2621331_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621356_2622343_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622361_2624401_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2624602_2625283_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625296_2626208_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626204_2626783_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626921_2627827_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627834_2631254_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631241_2633842_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634797_2635430_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635823_2636582_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2636578_2637781_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637968_2638919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639826_2640972_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640958_2641714_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641830_2642010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642075_2643026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	2671141	2708553	4105331	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2671141_2672092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672190_2673141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673233_2673773_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2673879_2674224_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674281_2675730_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2675917_2676253_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2677880_2679059_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679141_2679642_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2679751_2680453_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2680464_2680929_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2680943_2681219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2681215_2681992_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2682020_2682848_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2682973_2683444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2683570_2684464_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684511_2685693_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2685705_2686521_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2686654_2687182_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687178_2687676_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2687823_2688201_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2688422_2689373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2689471_2690083_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690317_2691445_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2691555_2692644_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2692696_2693548_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2693567_2694449_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2694625_2695939_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696149_2696983_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2696979_2697561_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2697914_2698865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2698880_2699996_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700098_2701025_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701024_2702263_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702259_2703027_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703027_2703729_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2703810_2704257_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2705146_2705785_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2706553_2707504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2707602_2708553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	2807680	2862197	4105331	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807680_2808631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808959_2809565_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809618_2810932_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811006_2811477_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811476_2812265_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812275_2813928_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814015_2814966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816127_2816634_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816630_2817395_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817410_2817695_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817759_2818749_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818920_2819850_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819821_2820508_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820541_2821087_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821131_2822397_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822393_2823296_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824477_2825422_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825516_2827034_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827075_2828704_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828811_2829693_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832805_2833180_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833204_2833543_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833586_2835221_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835259_2836606_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2836713_2838135_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838204_2838789_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838891_2839842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839976_2841083_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841093_2842191_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842335_2843541_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843547_2844069_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844065_2844557_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844553_2844805_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844785_2845271_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845406_2848868_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848885_2849770_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849779_2850211_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850457_2850961_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851038_2852439_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852513_2853389_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853385_2854393_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854860_2855166_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855256_2855847_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930320.1|2856037_2857054_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857245_2859582_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859664_2860099_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860197_2861148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861246_2862197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	2870222	2927008	4105331	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2870222_2871173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872879_2873146_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873853_2874192_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878745_2879348_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879444_2880734_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880791_2881523_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881519_2882323_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882319_2883408_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883404_2884334_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884482_2885628_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885649_2886600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886617_2886776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886930_2890752_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890908_2891577_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891581_2893255_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893273_2894593_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894597_2896913_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896968_2899137_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899133_2904323_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904412_2904727_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904954_2905200_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905294_2905813_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905912_2907118_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907233_2908631_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908747_2909326_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909398_2910790_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910957_2911908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912188_2912809_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912805_2913219_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913215_2914259_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914314_2914503_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914512_2915277_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915367_2916024_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916115_2916874_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916899_2918501_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918701_2919706_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919806_2920070_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920187_2920964_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921554_2922505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924888_2926001_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926057_2927008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	2957394	3001085	4105331	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2957394_2958345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2958362_2958512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958465_2959362_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961639_2963865_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964029_2965118_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965074_2965728_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965775_2966573_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967104_2968055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2968129_2969284_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969340_2970291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970389_2970695_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970723_2971158_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971159_2972404_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972400_2973111_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973125_2974037_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974399_2974804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974800_2975259_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2975265_2976174_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2976170_2977037_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977023_2977851_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977861_2978989_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980066_2981305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981346_2982609_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982615_2983368_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983419_2983605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983880_2984345_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984376_2985036_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985180_2987289_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987285_2988236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988339_2988960_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2989051_2989804_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990938_2992063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992108_2992477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992718_2993669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994704_2995247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995444_2995615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995632_2996583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2996579_2997545_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997614_2998451_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998963_3000073_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000134_3001085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	3381031	3434772	4105331	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381031_3381982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382386_3383031_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383055_3383640_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383740_3384358_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384360_3386076_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386072_3386381_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386397_3387015_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387059_3387362_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387462_3388317_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388504_3388729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388898_3389171_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389588_3389996_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390365_3391160_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391260_3392496_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392564_3393581_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393592_3394969_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394965_3396162_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396158_3397697_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397693_3398953_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400893_3401844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402610_3403705_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403697_3405032_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404985_3405669_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405694_3406858_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406854_3407856_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407855_3408728_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408724_3409474_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409470_3410262_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410258_3411398_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411673_3412459_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412492_3413275_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413278_3413668_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414807_3415671_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415706_3416795_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416791_3417742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418095_3421074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422000_3422879_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424827_3425778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425774_3426242_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426284_3427055_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427075_3427876_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427886_3429296_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429390_3430176_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430415_3431432_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431539_3431932_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432069_3432750_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432754_3433726_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433821_3434772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	3440927	3500225	4105331	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440927_3442691_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442802_3443681_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443793_3444609_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444612_3444864_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444948_3445965_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446295_3446517_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448877_3449795_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450292_3451501_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451580_3453152_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453269_3454205_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454393_3455338_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455905_3461623_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461628_3462756_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462811_3463438_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463709_3464726_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464821_3465532_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465528_3466518_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466613_3468245_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468247_3468985_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469140_3470013_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470281_3471502_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471498_3472158_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472229_3472862_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472891_3473410_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473420_3474530_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474576_3475431_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475432_3476335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477557_3478508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480262_3481252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481248_3481407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481427_3482216_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482212_3483244_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483262_3483826_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483881_3485402_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485665_3486370_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486377_3487115_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487220_3487595_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487637_3488927_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488923_3490093_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490089_3490929_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490988_3491924_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491936_3492887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492985_3493948_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493979_3494339_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494463_3495366_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495367_3497140_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497174_3497951_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499274_3500225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	3515163	3573236	4105331	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515163_3516114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516242_3517376_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517419_3518325_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518327_3520028_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520024_3520945_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520952_3521930_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521988_3523023_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3524997_3525234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525360_3526224_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526312_3527134_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527213_3527951_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527947_3528940_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529053_3529716_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529760_3530909_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533232_3534183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534523_3535474_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535572_3536523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536819_3537317_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537359_3539135_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539142_3540009_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540015_3540750_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541919_3542714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543003_3543594_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543627_3544956_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545030_3546176_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546287_3547286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547248_3547683_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549199_3550084_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550080_3551286_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551282_3552143_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552255_3554046_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554086_3554752_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554752_3555061_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555226_3556513_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557946_3558897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560848_3562063_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562168_3563158_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563154_3563763_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563775_3564405_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564401_3565022_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565053_3565845_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566696_3567152_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567170_3568097_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568150_3569437_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570367_3571240_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571236_3572187_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572285_3573236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP013092	Bordetella pertussis strain J193 chromosome, complete genome	4105331	4027502	4080934	4105331	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4027502_4028453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028622_4029849_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030048_4030915_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030907_4031870_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031970_4032921_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033019_4033970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034068_4035019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035015_4036509_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036505_4039613_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039609_4042678_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042674_4043925_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044105_4044867_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044899_4045550_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045552_4046392_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046632_4047376_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4047458_4047806_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047903_4048746_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048790_4049678_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049704_4049893_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049990_4051448_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051434_4052961_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052979_4053447_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4053446_4054469_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4054589_4055309_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4055384_4056485_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056486_4057677_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057796_4058813_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059131_4059803_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059799_4060708_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060919_4061567_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065418_4066495_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066505_4067315_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4067404_4068178_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068178_4068343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068360_4069311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069199_4070222_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070211_4071366_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4071405_4072818_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072942_4073809_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073810_4074635_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4074631_4075393_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4075473_4076160_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076333_4077341_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077337_4078117_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078174_4079437_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4079983_4080934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
