The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	37010	79602	4111645	tRNA,transposase	Synechococcus_phage(25.0%)	40	NA	NA
WP_010929585.1|37010_37922_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37923_40062_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40058_40598_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40601_41330_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41316_42210_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42280_42676_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42685_43216_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43661_44612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45198_45747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45718_45955_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46082_46976_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48145_49393_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49389_50004_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50139_51090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51132_52389_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53620_54355_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54360_54951_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54975_55665_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55661_56423_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56502_57402_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57495_58446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59246_60473_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60472_60886_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61075_62017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62440_63415_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63471_64053_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64065_64368_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64486_65545_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65579_66851_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67480_68662_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69083_70034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70127_70442_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71634_73542_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73703_74324_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74355_74937_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75025_75277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75278_76121_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76226_77636_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77632_78583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78657_79602_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	107425	175249	4111645	tRNA,transposase	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107425_108376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109275_110469_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110550_111180_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111241_111925_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111934_113617_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113904_114252_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114342_114660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|114942_115959_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116034_116835_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116831_117707_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117717_119010_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119052_120093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120198_121020_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121120_122071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122169_123075_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123071_123905_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124741_125752_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125748_126138_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127031_128285_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128375_130076_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130502_131150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131148_132588_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132680_132983_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133010_133889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135155_136106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136524_138033_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138779_142742_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142794_143577_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143664_144888_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144871_145804_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145809_146622_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147934_148906_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815135.1|149024_149807_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150573_151554_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151550_152279_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152303_152735_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152836_153712_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153762_154962_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155066_155528_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155633_157031_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157027_157705_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157760_159071_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159082_159781_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159944_160721_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160886_161909_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162137_162773_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929658.1|162769_164332_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164890_165841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167284_168187_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168164_168794_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169076_170507_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170540_171170_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171218_172826_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172850_173534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173615_174092_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174298_175249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	178631	236268	4111645	tRNA,transposase,protease	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181333_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182422_184327_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184323_187998_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188058_188622_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188629_189052_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189079_189499_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189527_190001_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190100_190598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190752_193023_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193071_194304_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194402_195353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195455_196091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196087_196981_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197375_198476_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198557_198932_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198991_201856_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202000_202741_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202810_204022_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204050_205019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205632_206583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206739_207063_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207167_208208_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208213_208993_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209038_209335_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209360_209636_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209692_210337_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210336_211023_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211152_212004_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212054_212780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212811_214161_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214272_215205_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|215662_218458_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219051_221994_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222065_222785_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222823_223372_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223526_224426_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224450_225401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225619_226315_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226331_227744_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227856_229287_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229328_231242_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231560_232127_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232217_233219_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233333_234284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235317_236268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	250682	303020	4111645	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_003814337.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251620_253510_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253596_254235_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254377_255763_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999816.1|265570_266908_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274125_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287021_287648_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287670_288597_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288605_290192_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290188_291193_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291392_292253_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292284_293286_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293356_294166_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294243_296103_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296231_297434_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297547_298429_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299931_300492_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300551_301502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301693_301981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302069_303020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	555308	614607	4111645	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555308_556259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557582_558359_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558393_560166_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560167_561070_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561194_561554_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561585_562548_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562646_563597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563609_564545_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564604_565444_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565440_566610_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566606_567896_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567938_568313_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568418_569156_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569163_569868_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570131_571652_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571707_572271_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572289_573321_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573317_574106_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574126_574285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574281_575271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577026_577977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579199_580102_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580103_580958_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581004_582114_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582124_582643_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582672_583305_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583376_584036_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584032_585253_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585521_586394_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586549_587287_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587289_588921_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589016_590006_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590002_590713_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590808_591825_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592096_592723_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592778_593906_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593911_599629_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600196_601141_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601329_602265_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602382_603954_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604033_605242_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605739_606657_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609017_609239_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931363.1|609569_610586_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610670_610922_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610925_611741_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611853_612732_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612843_614607_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	620762	674503	4111645	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620762_621713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621808_622780_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622784_623465_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623602_623995_+	OsmC family protein	NA	NA	NA	NA	NA
WP_023994644.1|624102_625119_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625358_626144_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626238_627648_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627658_628459_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628479_629250_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629292_629760_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629756_630707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632655_633534_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_077069053.1|634460_637439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637792_638743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638739_639828_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639863_640727_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641866_642256_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642259_643042_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643075_643861_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644136_645276_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645272_646064_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646060_646810_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646806_647679_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647678_648680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648676_649840_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649865_650549_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650502_651837_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651829_652924_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653690_654641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656581_657841_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657837_659376_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659372_660569_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660565_661942_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661953_662970_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663038_664274_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664374_665169_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665538_665946_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666363_666636_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666805_667030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667217_668072_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668172_668475_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668519_669137_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669153_669462_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669458_671174_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671176_671794_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671894_672479_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672503_673148_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673552_674503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	723441	763390	4111645	tRNA,transposase,protease,integrase	Pseudomonas_phage(33.33%)	29	720689:720707	740577:740595
720689:720707	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723441_724038_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724034_724817_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724889_725981_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726260_727388_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727729_728776_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728923_732043_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732044_734996_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735011_736223_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736406_737357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737373_737868_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737871_738129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738672_739584_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739665_739950_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740733_741684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740577:740595	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742102_744667_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744711_746565_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746897_748469_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749737_749893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749910_750861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750946_751687_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751913_752861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994811.1|755215_755428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|755391_756207_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756339_757779_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757792_758134_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758188_759844_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759995_761006_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761138_761912_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762439_763390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	773317	820935	4111645	tRNA,transposase,holin,protease	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|773317_774268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774406_775159_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775397_777122_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777141_778401_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778415_779510_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779506_781633_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781645_782326_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782603_783977_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783978_784998_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785061_786033_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786097_787048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787146_787989_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787988_788324_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788394_789813_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790092_791133_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791212_791464_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791574_792738_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793021_793876_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793872_794763_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794805_795717_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795743_796436_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796450_797431_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797443_799585_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799633_800602_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800592_801261_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801221_802157_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802153_803050_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803046_803769_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803759_803924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804097_804601_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804877_805993_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806135_806600_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806747_807287_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807308_808643_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808656_808962_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809386_809968_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810049_811000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811098_812049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812489_813395_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813450_815055_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815311_816817_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816831_817296_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817585_818536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|818553_818742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|818698_819229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819228_819540_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819984_820935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	1005151	1099188	4111645	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1005151_1006102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006204_1006867_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006961_1007132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007484_1008486_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008488_1009685_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009705_1010509_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010589_1010886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010916_1011480_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011520_1012378_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012385_1013135_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013156_1014029_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014057_1014837_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014870_1015668_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018322_1018715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018708_1019569_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019572_1020535_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021311_1022001_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022861_1023812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024161_1025031_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025101_1025797_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025786_1026296_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026292_1027513_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027460_1028363_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029249_1030536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030574_1031948_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031986_1032688_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032986_1033976_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034076_1034538_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034553_1035102_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035243_1036719_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036824_1037916_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037919_1038702_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038711_1039500_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040625_1041060_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041056_1042067_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042110_1043037_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043323_1043692_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1043744_1043891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1043908_1044859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044903_1047330_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047378_1048071_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048143_1049343_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049360_1050266_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050381_1051311_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051336_1052683_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052710_1053460_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053473_1054256_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054448_1055399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055460_1056570_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057082_1057919_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057988_1058954_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058950_1059901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1059918_1060089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060286_1060829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061864_1062815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063056_1063425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063470_1064595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065729_1066482_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066573_1067194_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067297_1068248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068244_1070353_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070497_1071157_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071188_1071653_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071928_1072114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072165_1072918_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072924_1074187_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074228_1075467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076544_1077672_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077682_1078510_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078496_1079363_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080729_1081134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081225_1082176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1082193_1082358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1082545_1083457_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083471_1084182_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084178_1085423_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085424_1085859_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085887_1086193_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086291_1087242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087298_1088453_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088527_1089478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090009_1090807_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090854_1091508_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091464_1092553_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092717_1094943_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097220_1098117_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1098070_1098220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1098237_1099188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	1129574	1201589	4111645	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1129574_1130525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130581_1131694_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134077_1135028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135618_1136395_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136512_1136776_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136876_1137881_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138081_1139683_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139708_1140467_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140558_1141215_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141305_1142070_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142079_1142268_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142323_1143367_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143363_1143777_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143773_1144394_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144674_1145625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145792_1147184_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147256_1147835_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147951_1149349_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149464_1150670_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150769_1151288_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151382_1151628_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151855_1152170_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152259_1157449_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157445_1159614_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159669_1161985_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161989_1163309_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163327_1165001_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165005_1165674_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165830_1169652_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1169806_1169965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1169982_1170933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170954_1172100_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172248_1173178_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173174_1174263_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174259_1175063_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175059_1175791_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175848_1177138_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177234_1177837_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182389_1182728_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183435_1183702_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185408_1186359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186355_1187687_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188947_1190948_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190940_1191582_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191578_1191986_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191982_1192783_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192857_1193562_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193593_1194388_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194384_1195335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1196478_1197429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197527_1197962_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198044_1200381_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200572_1201589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	1248982	1329857	4111645	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1248982_1249933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249929_1250880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251140_1252169_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252248_1253547_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253543_1254125_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254437_1258484_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1258724_1266386_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266382_1267333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268472_1268946_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269085_1269706_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1269841_1270642_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270696_1271788_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271809_1272253_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272281_1272914_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273024_1273441_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273433_1274126_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274232_1274607_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274683_1275493_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275588_1276533_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276571_1277543_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277633_1278071_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278129_1279011_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280014_1280875_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280907_1282290_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282286_1283306_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283678_1284173_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284180_1284921_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285001_1286606_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286645_1287434_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288636_1289725_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290605_1291418_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291430_1291739_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291856_1293587_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293588_1294734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1294863_1295532_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295653_1296121_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296256_1297639_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297635_1298760_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298756_1301393_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301808_1302759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306505_1307117_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307339_1308800_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308896_1310489_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310842_1311100_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311101_1312442_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312537_1313227_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313239_1314670_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316394_1317216_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317226_1318798_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318826_1319804_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319830_1320634_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320630_1321425_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321432_1322668_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322660_1323095_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323844_1324795_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325416_1327144_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327255_1328614_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1328670_1328889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1328906_1329857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	1743203	1791218	4111645	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1743203_1744154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1744252_1746853_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1746959_1747964_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1748072_1749413_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1749453_1750482_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1750677_1751223_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1751219_1751780_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1751878_1752829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1752866_1753454_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1753471_1753855_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1755214_1756507_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1756641_1757682_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1757779_1758796_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1759063_1759711_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1759836_1760595_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1760579_1761359_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1761376_1762261_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1762257_1763037_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1763141_1763741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1764029_1764782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1764900_1766301_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1766324_1766723_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1766898_1767099_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1767237_1767966_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1768099_1769515_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1769518_1770382_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1770394_1771144_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1771326_1773342_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1773323_1773992_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1774766_1775717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1775815_1776766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1776914_1777253_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1777310_1777472_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1777503_1777704_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1777969_1780543_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1780613_1783163_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1785713_1786202_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1786293_1787445_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1787498_1788320_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1788358_1789588_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1789716_1790157_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1790267_1791218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	1794611	1856865	4111645	tRNA,transposase,protease	Lake_Baikal_phage(21.43%)	54	NA	NA
WP_010930542.1|1794611_1797473_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1797462_1798428_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1798487_1800482_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1800580_1801531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1801527_1801902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1802163_1803372_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_003812546.1|1803368_1805669_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1805721_1808334_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930546.1|1808693_1810619_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|1810615_1811512_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1811518_1812658_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1812657_1813479_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1815049_1815379_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1815761_1817018_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1817092_1817374_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1817415_1817736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1818042_1818246_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|1818329_1818896_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1819241_1819442_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_010930554.1|1819553_1820114_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1820310_1821621_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1821623_1822277_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1822381_1823686_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1823874_1826328_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1826451_1827402_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1827629_1828853_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1828918_1829890_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1829956_1830358_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_015063637.1|1830371_1831175_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1831171_1831603_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010930563.1|1831599_1832757_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1832778_1833555_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1835767_1836436_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1836428_1837070_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|1837104_1837836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1837853_1838066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1838636_1839587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1841144_1841795_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1841923_1843126_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1843203_1845240_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1845492_1845984_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1846199_1846712_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1846729_1847941_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1847978_1848389_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1848390_1848714_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1848716_1849229_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1849358_1851221_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1851230_1851572_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1851571_1851766_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1851890_1852784_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1852780_1853731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1853855_1854665_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1854865_1855816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931532.1|1855914_1856865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	1884648	1942317	4111645	tRNA,transposase,protease	Klosneuvirus(30.0%)	56	NA	NA
WP_010930590.1|1884648_1887273_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1887259_1887514_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1887580_1888162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1888465_1888726_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1888891_1889515_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1889514_1890288_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1890284_1891493_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1891518_1891992_-	RidA family protein	NA	NA	NA	NA	NA
WP_076879566.1|1892065_1893016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1893114_1894464_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1895229_1895985_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1896077_1898960_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1899282_1899708_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1899735_1900884_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1900880_1901387_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1901393_1902689_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1902747_1904034_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1904035_1904674_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_077069010.1|1904676_1905837_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1905863_1907219_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1907222_1908293_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1908431_1908668_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1908755_1909862_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1909827_1911132_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1911150_1912050_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1912233_1913391_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1913467_1914763_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1914876_1915416_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1915693_1915906_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1915925_1917956_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_010930783.1|1918641_1920924_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1921333_1921633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1921917_1922331_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1922290_1923241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1923440_1924526_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1924541_1925303_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1925299_1926259_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1926321_1926822_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1926854_1927598_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1927693_1927933_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1927946_1928099_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1928184_1929675_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1929766_1930705_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1930701_1930878_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1930880_1931543_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1933164_1933308_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1933304_1934279_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1934173_1934428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1934445_1935396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1935392_1936667_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1936770_1937964_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1937960_1938614_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1938610_1940047_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1940034_1940394_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1941208_1941349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1941366_1942317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	1963010	1990525	4111645	transposase	Mycobacterium_phage(25.0%)	24	NA	NA
WP_005012067.1|1963010_1963961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1964613_1965564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1965582_1965930_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1965958_1967398_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1967416_1967812_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1967986_1968595_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|1968607_1969426_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1969377_1970352_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1970380_1971442_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1971438_1973655_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1973668_1974127_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1974284_1974629_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1974785_1975691_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1975777_1976791_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|1978770_1979787_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1979929_1981282_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1981456_1981753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|1981851_1982802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1982900_1983851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1984104_1985910_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1986023_1986191_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1986254_1986491_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1986859_1988059_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1989574_1990525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	2025307	2084883	4111645	tRNA,transposase	Staphylococcus_phage(50.0%)	47	NA	NA
WP_010930730.1|2025307_2026258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2027128_2028001_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2028078_2029218_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2029576_2030833_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2030838_2031366_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2031370_2032189_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2032188_2032911_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2032932_2033247_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2033264_2034413_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2034443_2035319_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2035315_2036635_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2036707_2037904_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2037914_2039402_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2041996_2042896_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2043033_2043999_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2044097_2045048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2045269_2046220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2046216_2046519_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2046678_2047083_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2047075_2048302_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2048298_2048745_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2048814_2049597_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2049638_2051144_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2051429_2052263_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2053700_2054522_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2054540_2055395_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2055398_2056370_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2057054_2057231_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2057716_2058667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2058765_2059716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247822.1|2059992_2060430_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_003810260.1|2060552_2061065_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930709.1|2061061_2062264_+	MFS transporter	NA	NA	NA	NA	NA
WP_003818515.1|2062341_2064999_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_003810254.1|2065014_2065674_+	lipoprotein	NA	NA	NA	NA	NA
WP_003818514.1|2065676_2066732_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_010930708.1|2066853_2068113_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003810249.1|2068109_2068505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930707.1|2068527_2069922_-	amidase family protein	NA	NA	NA	NA	NA
WP_010930706.1|2070103_2071051_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810239.1|2071047_2071320_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_047122782.1|2071384_2071828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248843.1|2078385_2078634_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_010930705.1|2078722_2079685_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|2080916_2082434_-	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010926318.1|2082659_2083571_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2083932_2084883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	2247232	2308580	4111645	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2247232_2248183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2248299_2249019_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2249191_2250178_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2250178_2250661_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2250664_2251948_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2251944_2252883_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2252879_2254589_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2254598_2255846_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2257456_2258746_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2259883_2260642_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2261318_2262062_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2262136_2262877_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2263072_2263909_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2263959_2264730_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2264779_2265832_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2265828_2266455_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2266451_2267486_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2267664_2268681_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2268779_2269730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2272470_2273760_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2273878_2274316_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2274359_2275568_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2275714_2276179_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_054604408.1|2276202_2277153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2278137_2278911_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2278907_2279906_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2279990_2280767_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2280922_2282527_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2282907_2284032_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2284158_2284782_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2284778_2286680_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2286728_2287523_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2287535_2288537_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2288533_2289040_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2289032_2289881_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2289978_2290521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2290564_2291515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2291670_2291997_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2291993_2292278_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2292274_2292754_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2292750_2294379_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2294375_2294720_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2294719_2297653_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2298811_2299762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2299860_2300157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2300263_2301181_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2301185_2301899_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2301912_2302884_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2304603_2304984_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2304987_2306175_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2306598_2307336_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2307629_2308580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	2329371	2400525	4111645	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2329371_2330322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2330874_2332500_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2332549_2333584_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2333586_2334933_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2334929_2336444_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2336434_2337445_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2337918_2338860_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2338868_2339837_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2341376_2342345_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2342522_2343512_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2343558_2344317_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2344506_2345244_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2345342_2346293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2346477_2347260_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2347253_2347955_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2348194_2348797_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2350123_2351074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2351070_2352627_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2352619_2353393_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2353451_2354402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2354483_2355659_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2355672_2357730_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2357726_2358752_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2358763_2360053_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2360075_2361173_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2361169_2362060_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2362056_2364141_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2364172_2365342_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2365383_2366124_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2366123_2366894_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2367218_2367386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2367749_2368535_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2368561_2370646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2370813_2372769_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2373092_2373593_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2373691_2375218_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2375355_2376243_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2376257_2377211_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2377262_2379353_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2379368_2379755_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2382448_2383252_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2384545_2385448_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2385512_2386289_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2386610_2387660_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2387783_2389454_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2389458_2390253_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2390351_2391302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2391321_2392227_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2392304_2393003_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2393162_2394107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2394116_2395604_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2395603_2396671_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2396734_2398147_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2398332_2399553_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2399574_2400525_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	2497402	2556183	4111645	tRNA,transposase	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2497402_2499352_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2499739_2500516_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2500521_2500914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2501335_2502286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2502282_2503380_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2503411_2504362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2506143_2507385_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2507396_2508170_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2508196_2509147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509626_2510283_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510297_2511965_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511967_2512597_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512808_2513903_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514047_2514860_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2514863_2516567_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2516617_2517748_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517934_2519011_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519092_2519743_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519757_2521161_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521444_2522263_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2522259_2522964_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523863_2524979_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2525012_2525387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525409_2526567_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526579_2526813_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527447_2530417_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530431_2530641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530792_2531422_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2531418_2533509_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533532_2534213_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534209_2534770_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534776_2535874_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536026_2536620_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536616_2537909_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537922_2538465_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538474_2539311_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539344_2540406_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540447_2541500_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541515_2541818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541959_2542910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2542927_2543092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2543088_2544783_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544779_2545865_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545912_2546812_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546822_2547467_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548488_2551731_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551741_2552896_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553122_2554085_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554183_2555134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555232_2556183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	2875656	2948982	4111645	tRNA,transposase,protease	Catovirus(22.22%)	54	NA	NA
WP_010930211.1|2875656_2877012_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2878490_2879213_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2879267_2880251_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2880380_2881331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2881327_2882230_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2882317_2883076_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2883088_2884180_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2884277_2885705_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2885934_2887149_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2887194_2890065_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2892475_2892964_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2893089_2895786_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2895940_2898223_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2898396_2899020_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2899118_2900069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2900115_2900670_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2900737_2901583_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2901652_2902621_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2902620_2903484_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2906316_2910243_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_162290921.1|2910533_2910887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930194.1|2910979_2914210_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2914491_2915319_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2915352_2916048_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2916040_2917321_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2917330_2918308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2918289_2919990_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2920092_2921196_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2921226_2921982_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2921988_2923509_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2923551_2923854_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2923850_2924483_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2924561_2926427_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2926423_2927218_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2927246_2928362_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2929266_2930145_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2930144_2930969_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2931136_2932087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2932299_2935149_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2935130_2935859_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2935999_2937463_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2937459_2937831_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2937848_2939162_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2939198_2939657_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2939611_2939752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2939769_2940720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2940716_2941730_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2941869_2942856_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2943214_2943922_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2944502_2945453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2945604_2946207_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2946225_2946858_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2946902_2947154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2947095_2948982_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	2960707	3011372	4111645	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2960707_2961658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2961684_2962149_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2963355_2965644_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2965760_2966633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2966675_2967830_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2967864_2968695_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2968778_2970323_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2970365_2970725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2970726_2971140_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2971180_2971498_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2971582_2972299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2972562_2973984_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|2975186_2976137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2978179_2979196_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2979531_2980173_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2980263_2981700_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2981857_2982931_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2982927_2984064_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2984208_2984553_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2984619_2986500_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2986549_2987485_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2987817_2988834_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2989774_2991202_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2991198_2992221_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2992210_2992684_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2992824_2993712_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2993708_2995352_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2995348_2996398_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2997186_2998203_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2998302_2998935_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2998943_2999333_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2999385_3000438_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3001301_3003008_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3003081_3003582_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3003596_3005654_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3005680_3005974_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3006075_3007023_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3007035_3007911_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3008031_3008592_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3008626_3008950_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3009385_3010123_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3010421_3011372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	3032323	3104817	4111645	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_005012808.1|3032323_3033274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3033316_3034492_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3034713_3036504_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3036516_3038178_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3038190_3040896_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3041188_3042943_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3042939_3043566_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3043562_3044414_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3044489_3046604_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3046790_3047405_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3047550_3047802_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3047871_3049254_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3049250_3052430_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3053237_3054155_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3054206_3054938_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3054997_3055570_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3057078_3058095_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3058232_3059282_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3059386_3060337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3060432_3061158_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3061368_3061749_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3062054_3062927_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3062934_3063315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3063468_3064743_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3066230_3067139_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3067936_3069001_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3070837_3071839_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3072061_3072703_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3072785_3074612_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3074855_3075785_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3075784_3076534_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3076605_3077520_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3077539_3078685_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3078745_3079657_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3079737_3080688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3080786_3081371_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3081405_3082395_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3082391_3083333_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3083329_3084550_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3084592_3084907_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3085098_3085458_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3085459_3087175_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3087362_3088034_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3088048_3089377_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3089373_3090273_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3090359_3091445_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3091437_3092571_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3092570_3095252_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3095622_3096204_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3096329_3097055_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3097051_3097729_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3097944_3099126_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3099898_3100081_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3100110_3101061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3101190_3101583_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3101859_3102771_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3102895_3103870_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3103866_3104817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	3118324	3171841	4111645	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3118324_3119275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3119386_3119638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3120143_3121262_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3121381_3121594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3121753_3121975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3122027_3122978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3124154_3125525_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3125557_3126349_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3126361_3127417_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3127442_3128318_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3128423_3128672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3128706_3130161_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3130157_3130679_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3130707_3132060_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3132283_3135172_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3137316_3138618_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3138632_3139349_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3139630_3140311_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3140322_3140490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3140598_3140745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3140838_3141498_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3141896_3143729_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3143725_3144676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3145839_3147555_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3147565_3148057_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3148129_3149146_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3149313_3150093_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3150111_3150639_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3150932_3151202_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3151292_3153452_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3153572_3154292_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3154288_3155239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3155379_3156597_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3156590_3157202_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3157835_3158813_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3158956_3159703_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3159724_3160171_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3160958_3163190_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3163212_3164013_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3164294_3165527_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3165637_3166627_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3166657_3168046_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3169644_3170628_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3170824_3171841_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	3194864	3231968	4111645	transposase,holin	Vibrio_phage(50.0%)	34	NA	NA
WP_010931070.1|3194864_3195815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3195897_3197856_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3197883_3198585_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3198731_3199547_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3199543_3200359_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3200375_3201179_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3201162_3201597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3201593_3202028_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3202029_3202584_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3202601_3203552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3203650_3204601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|3204760_3205633_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|3205973_3206192_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|3206231_3207611_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|3207652_3209050_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|3209089_3210742_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|3210745_3211630_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|3211629_3212571_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|3212649_3214269_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|3214435_3215251_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|3215318_3215888_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3215888_3216839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|3217493_3218591_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|3218624_3219890_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|3220047_3220998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|3221241_3221832_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|3221847_3224292_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|3224411_3225383_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|3225514_3226039_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|3225998_3226949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3227047_3227998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|3228219_3230415_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|3230487_3230916_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|3231017_3231968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	3323894	3424007	4111645	tRNA,terminase,transposase,protease,tail	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3323894_3324845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3325576_3325954_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3325938_3326640_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3326783_3327476_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3327475_3328579_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3328688_3331061_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3331057_3332617_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3332641_3333439_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3333470_3334616_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3334720_3336163_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3336165_3337395_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3339532_3340483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3341612_3342170_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3342145_3342496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3342664_3343459_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3343455_3344505_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3344504_3345194_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3345280_3345778_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3345809_3347126_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3347142_3348117_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3348153_3348612_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3348611_3349292_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3349294_3349723_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3349775_3351506_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3351571_3352144_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3352124_3352811_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3353166_3353838_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3354166_3354388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3354387_3354669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3354665_3355181_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3355180_3355732_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3355710_3355953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3355957_3356770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3356769_3357033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3357073_3357271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3357251_3357668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3357672_3361629_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3361621_3362011_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3362007_3362541_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3362608_3362968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3362977_3365590_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3365615_3365906_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3365923_3366253_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3366262_3366781_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3367035_3367536_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3367543_3367966_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3367962_3368361_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3368357_3368753_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3368752_3368953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3368954_3369437_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3369499_3369751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3370425_3371376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3371804_3372407_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3372529_3372772_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3372777_3373833_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3373861_3375280_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3375282_3376560_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3376546_3377032_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3377671_3378622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3378639_3378861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3378878_3379568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3379560_3379812_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3380366_3380978_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3381049_3381256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3381507_3382458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3382556_3383630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3383797_3384592_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3384631_3385156_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3385148_3386891_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3387100_3387859_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3387861_3388569_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3388585_3389467_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3389477_3390236_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3390204_3390960_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3391029_3392448_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3392469_3393120_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3393253_3393589_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3393677_3394628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3394704_3396525_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3396529_3397603_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3397725_3398694_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3398767_3399679_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3399697_3400270_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3400350_3400899_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3400898_3402488_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3402557_3402797_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3402837_3403863_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3403928_3405110_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3405206_3405659_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3405668_3407009_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3407325_3408363_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3408744_3409104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3409187_3410129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3410203_3411154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3411447_3412542_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3412623_3413505_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3413526_3414366_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3414441_3415959_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3416055_3417156_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3417172_3417595_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3417617_3417830_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3417876_3418797_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3418979_3419729_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3419731_3420061_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3420267_3421701_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3421712_3422096_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3422157_3422958_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3423056_3424007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013090	Bordetella pertussis strain J191 chromosome, complete genome	4111645	4033816	4087248	4111645	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4033816_4034767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034936_4036163_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4036362_4037229_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4037221_4038184_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4038284_4039235_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4039333_4040284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4040382_4041333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4041329_4042823_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4042819_4045927_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4045923_4048992_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4048988_4050239_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4050419_4051181_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4051213_4051864_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4051866_4052706_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4052946_4053690_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4053772_4054120_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4054217_4055060_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4055104_4055992_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4056018_4056207_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4056304_4057762_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4057748_4059275_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4059293_4059761_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4059760_4060783_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4060903_4061623_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4061698_4062799_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4062800_4063991_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4064110_4065127_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4065445_4066117_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4066113_4067022_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4067233_4067881_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4071732_4072809_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4072819_4073629_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4073718_4074492_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4074492_4074657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853639.1|4074674_4075625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077598841.1|4075513_4076536_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4076525_4077680_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4077719_4079132_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4079256_4080123_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4080124_4080949_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4080945_4081707_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4081787_4082474_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4082647_4083655_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4083651_4084431_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4084488_4085751_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|4086297_4087248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
