The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	27282	70036	4105345	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	77634	136108	4105345	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	164894	225405	4105345	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	233337	286925	4105345	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278109_278256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	555310	614610	4105345	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555310_556261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558395_560168_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_010929591.1|562648_563599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563611_564547_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565442_566612_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566608_567898_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568420_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571709_572273_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573319_574108_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574128_574287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574283_575273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|577029_577980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579202_580105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580106_580961_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581007_582117_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582127_582646_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582675_583308_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583379_584039_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584035_585256_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585524_586397_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586552_587290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587292_588924_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589019_590009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590005_590716_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590811_591828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592099_592726_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592781_593909_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593914_599632_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600199_601144_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601332_602268_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602385_603957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604036_605245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605742_606660_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609020_609242_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609572_610589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610673_610925_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610928_611744_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611856_612735_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612846_614610_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	620765	674506	4105345	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620765_621716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621811_622783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622787_623468_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623605_623998_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624105_625122_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625361_626147_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626241_627651_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627661_628462_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628482_629253_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629295_629763_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629759_630710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632658_633537_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634463_637442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637795_638746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638742_639831_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639866_640730_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641869_642259_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642262_643045_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643078_643864_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644139_645279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645275_646067_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646063_646813_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646809_647682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647681_648683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648679_649843_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649868_650552_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650505_651840_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651832_652927_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653693_654644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656584_657844_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657840_659379_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659375_660572_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660568_661945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661956_662973_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663041_664277_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664377_665172_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665541_665949_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666366_666639_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666808_667033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667220_668075_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668175_668478_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668522_669140_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669156_669465_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669461_671177_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671179_671797_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671897_672482_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672506_673151_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673555_674506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	723444	764443	4105345	tRNA,transposase,protease,integrase	Pseudomonas_phage(33.33%)	30	720692:720710	741629:741647
720692:720710	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723444_724041_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724037_724820_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724892_725984_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726263_727391_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727732_728779_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728926_732046_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732047_734999_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_005012067.1|735615_736566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|737458_738409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738425_738920_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738923_739181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739724_740636_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740717_741002_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741785_742736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741629:741647	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743154_745719_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745763_747617_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|747949_749521_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|750789_750945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|750962_751913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751998_752739_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752965_753913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755300_756251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|756268_756481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|756444_757260_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757392_758832_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758845_759187_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759241_760897_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761048_762059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762191_762965_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763492_764443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	774370	821988	4105345	tRNA,transposase,protease,holin	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|774370_775321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775459_776212_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|776450_778175_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|778194_779454_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779468_780563_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|780559_782686_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|782698_783379_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783656_785030_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785031_786051_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786114_787086_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787150_788101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788199_789042_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789041_789377_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789447_790866_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791145_792186_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792265_792517_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792627_793791_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794074_794929_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794925_795816_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795858_796770_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796796_797489_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797503_798484_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798496_800638_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800686_801655_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801645_802314_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802274_803210_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803206_804103_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804099_804822_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804812_804977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805150_805654_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805930_807046_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807188_807653_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807800_808340_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808361_809696_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809709_810015_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810439_811021_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811102_812053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812151_813102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813542_814448_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|814503_816108_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816364_817870_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817884_818349_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818638_819589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|819606_819795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|819751_820282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820281_820593_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821037_821988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	1006203	1100240	4105345	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1006203_1007154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007256_1007919_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008013_1008184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008536_1009538_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009540_1010737_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010757_1011561_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011641_1011938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011968_1012532_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012572_1013430_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013437_1014187_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014208_1015081_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015109_1015889_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015922_1016720_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019374_1019767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019760_1020621_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020624_1021587_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022363_1023053_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023913_1024864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025213_1026083_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026153_1026849_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026838_1027348_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027344_1028565_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028512_1029415_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030301_1031588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031626_1033000_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033038_1033740_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034038_1035028_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035128_1035590_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035605_1036154_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036295_1037771_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037876_1038968_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038971_1039754_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039763_1040552_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041677_1042112_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042108_1043119_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043162_1044089_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044375_1044744_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1044796_1044943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1044960_1045911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045955_1048382_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048430_1049123_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049195_1050395_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050412_1051318_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051433_1052363_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052388_1053735_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053762_1054512_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054525_1055308_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055500_1056451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056512_1057622_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058134_1058971_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059040_1060006_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060002_1060953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1060970_1061141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061338_1061881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062916_1063867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064108_1064477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064522_1065647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066781_1067534_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067625_1068246_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068349_1069300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069296_1071405_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071549_1072209_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072240_1072705_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072980_1073166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073217_1073970_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073976_1075239_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075280_1076519_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077596_1078724_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078734_1079562_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079548_1080415_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081781_1082186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082277_1083228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1083245_1083410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1083597_1084509_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084523_1085234_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085230_1086475_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086476_1086911_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086939_1087245_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087343_1088294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088350_1089505_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089579_1090530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091061_1091859_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091906_1092560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092516_1093605_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093769_1095995_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098272_1099169_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1099122_1099272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1099289_1100240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	1130626	1200547	4105345	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130626_1131577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131633_1132746_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135129_1136080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136670_1137447_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137564_1137828_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137928_1138933_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139133_1140735_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140760_1141519_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141610_1142267_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142357_1143122_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143131_1143320_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143375_1144419_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144415_1144829_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144825_1145446_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145726_1146677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146844_1148236_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148308_1148887_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149003_1150401_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150516_1151722_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151821_1152340_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152434_1152680_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152907_1153222_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153311_1158501_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158497_1160666_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160721_1163037_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163041_1164361_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164379_1166053_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166057_1166726_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166882_1170704_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1170858_1171017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1171034_1171985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172006_1173152_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173300_1174230_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174226_1175315_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175311_1176115_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176111_1176843_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176900_1178190_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178286_1178889_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183441_1183780_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184487_1184754_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186460_1187411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187407_1188739_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1189999_1192000_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191992_1192634_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192630_1193038_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193034_1193835_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193909_1194614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194645_1195440_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195436_1196387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196485_1196920_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197002_1199339_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199530_1200547_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	1247941	1328816	4105345	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1247941_1248892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248888_1249839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250099_1251128_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251207_1252506_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252502_1253084_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253396_1257443_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257683_1265345_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265341_1266292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268044_1268665_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268800_1269601_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269655_1270747_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271983_1272400_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273191_1273566_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279866_1281249_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285604_1286393_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287595_1288684_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292547_1293693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293822_1294491_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300767_1301718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306298_1307759_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312198_1313629_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318789_1319593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321619_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322803_1323754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324375_1326103_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326214_1327573_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1327629_1327848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1327865_1328816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	1448211	1500364	4105345	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1448211_1449162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1449179_1449332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1449328_1449682_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449694_1450057_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450098_1450524_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450726_1451983_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452181_1453162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453311_1454553_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_010931070.1|1454651_1455602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455610_1456306_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459127_1459727_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459737_1461903_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461926_1463711_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463710_1463800_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464494_1464767_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464766_1466833_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466829_1467780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468944_1469277_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469273_1469960_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469946_1470906_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470947_1473308_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473307_1473940_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474041_1475382_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475428_1476784_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476909_1477554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477498_1477816_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478088_1478604_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478697_1478859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478874_1479630_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479968_1480175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480182_1480842_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481136_1483341_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483451_1484675_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484797_1485772_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485839_1487033_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487047_1487848_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487844_1489701_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489697_1490303_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490321_1491707_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492432_1493659_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493747_1494530_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494628_1495579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495605_1496379_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496390_1497632_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499413_1500364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	1544289	1612375	4105345	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1544289_1544778_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544895_1545474_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545579_1545948_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546046_1546997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547003_1548116_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548802_1550005_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1550040_1550187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1550208_1552869_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1552881_1556286_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556953_1559179_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559225_1559552_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559602_1560211_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560309_1561260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561329_1562094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1562090_1562690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562793_1563645_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563704_1564331_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564327_1565278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565376_1566489_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566478_1567480_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567585_1569097_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569093_1570398_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570509_1571070_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571337_1571892_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572347_1572563_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572817_1575415_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575411_1576599_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1577257_1577872_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1577960_1579088_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579099_1580005_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580897_1581848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582029_1582782_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582850_1583510_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583506_1584235_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584247_1586527_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586551_1586755_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586796_1587429_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587564_1588482_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588478_1589192_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589429_1590200_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590204_1590804_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591048_1592539_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592597_1592882_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1593019_1593175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1593447_1594374_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594510_1595251_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595417_1596794_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596975_1597881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599532_1601335_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1601461_1602103_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602201_1603152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603173_1604394_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604579_1605992_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606055_1607123_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607122_1608610_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608619_1609564_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609723_1610422_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610499_1611405_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611424_1612375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	1648324	1703915	4105345	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648324_1649275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649333_1650107_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650099_1651656_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651652_1652603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653929_1654532_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654771_1655473_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655466_1656249_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656433_1657384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657482_1658220_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658409_1659168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659214_1660204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660381_1661350_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662889_1663858_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663866_1664808_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665281_1666292_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666282_1667797_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667793_1669140_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1669142_1670177_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670226_1671852_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672404_1673355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673459_1674407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674460_1676275_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676267_1676942_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677071_1680146_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680159_1680459_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680773_1681397_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1681640_1682510_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682487_1683432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683517_1684444_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1684556_1685336_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685326_1686523_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686553_1687504_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687725_1688415_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688479_1689235_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689286_1690279_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690288_1691242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691357_1692320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693721_1694150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694146_1695097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1695390_1696128_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696551_1697739_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1697742_1698123_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699842_1700814_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700827_1701541_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701545_1702463_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702569_1702866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1702964_1703915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	1936679	2006331	4105345	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1936679_1939337_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1939414_1940617_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1940613_1941126_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1941248_1941686_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1941962_1942913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1943011_1943962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1944215_1946021_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1946134_1946302_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1946365_1946602_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1946970_1948170_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1949685_1950636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1951087_1952089_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1952261_1953119_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1953115_1954378_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1954478_1954853_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1954925_1956113_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1956197_1956968_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1957081_1957846_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1957796_1959098_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1959094_1959901_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1961645_1962617_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1962773_1963286_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1963444_1964419_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1965419_1966214_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1966239_1967046_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1967156_1967747_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1967757_1968936_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1969038_1969413_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1969665_1970997_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1971063_1974294_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1975784_1976531_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1976615_1977077_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1977114_1978173_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1978135_1979965_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1980004_1980577_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1982001_1982823_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1983141_1984464_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1984823_1985459_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1985418_1986369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1987239_1988112_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1988189_1989329_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1989687_1990944_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1990949_1991477_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1991481_1992300_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1992299_1993022_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1993043_1993358_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1993375_1994524_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1994554_1995430_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1995426_1996746_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1996818_1998015_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1998025_1999513_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2002107_2003007_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2003144_2004110_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2004208_2005159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2005380_2006331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	2017827	2067223	4105345	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2017827_2018778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019915_2020212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020386_2021739_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930525.1|2021881_2022898_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2024877_2025891_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2025977_2026883_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2027039_2027384_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027541_2028000_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2028013_2030230_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030226_2031288_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031316_2032291_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032242_2033061_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033073_2033682_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2033856_2034252_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034270_2035710_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035738_2036086_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2036104_2037055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037707_2038658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038741_2040559_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040632_2041280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041292_2042222_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042391_2042856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043103_2043784_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043832_2045524_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045539_2046091_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046087_2046459_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046571_2047408_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047418_2047943_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048040_2048220_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048349_2049324_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049454_2049811_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049800_2050676_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050774_2051659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051680_2052976_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053924_2054575_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2054662_2056183_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056440_2058306_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059351_2060302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060319_2060460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061274_2061634_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061621_2063058_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063054_2063708_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063704_2064898_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2065001_2066276_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066272_2067223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	2078423	2130858	4105345	tRNA,transposase,protease	Klosneuvirus(22.22%)	44	NA	NA
WP_005013747.1|2078423_2079374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2079333_2079747_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2080031_2080331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2080740_2083023_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2083708_2085739_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2085758_2085971_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2086248_2086788_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2086901_2088197_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2088273_2089431_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2089614_2090514_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2090532_2091837_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2091802_2092909_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2092996_2093233_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2093371_2094442_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2094445_2095801_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2095827_2096988_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2096990_2097629_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2097630_2098917_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2098975_2100271_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2100277_2100784_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2100780_2101929_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2101956_2102382_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2102704_2105587_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2105679_2106435_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2107200_2108550_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2108648_2109599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2109697_2110648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2110721_2111195_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2111220_2112429_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2112425_2113199_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2113198_2113822_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2113987_2114248_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2114551_2115133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2115199_2115454_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2115440_2118065_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2118136_2118955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2118951_2119557_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2119594_2120728_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2122443_2122818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2122915_2124190_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2124193_2125771_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2126677_2128033_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2128029_2129664_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_005012067.1|2129907_2130858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	2146897	2212446	4105345	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2146897_2147848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2148048_2148858_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2148982_2149933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2149929_2150823_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2150947_2151142_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2151141_2151483_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2151492_2153355_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2153484_2153997_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2153999_2154323_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2154324_2154735_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2154772_2155984_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2156001_2156514_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2156729_2157221_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2157473_2159510_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2159587_2160790_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2160918_2161569_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2163126_2164077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164647_2164860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164877_2165609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165643_2166285_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166277_2166946_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169158_2169935_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169956_2171114_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171110_2171542_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2171538_2172342_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172355_2172757_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172823_2173795_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173860_2175084_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175311_2176262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176385_2178839_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2179027_2180332_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180436_2181090_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181092_2182403_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2182599_2183160_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183271_2183472_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183817_2184384_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184467_2184671_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2184977_2185298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185339_2185621_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185695_2186952_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187334_2187664_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189234_2190056_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190055_2191195_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191201_2192098_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2192094_2194020_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194379_2196992_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197044_2199345_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199341_2200550_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2200811_2201186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201182_2202133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202231_2204226_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204285_2205251_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205240_2208102_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208104_2208611_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208715_2209924_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209925_2210864_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2211025_2211499_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211495_2212446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	2506093	2564337	4105345	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2506093_2507044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507523_2508180_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508194_2509862_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509864_2510494_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510705_2511800_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511944_2512757_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2512760_2514464_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2514514_2515645_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515831_2516908_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2516989_2517640_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517654_2519058_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519341_2520160_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2520156_2520861_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521760_2522876_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522909_2523284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523306_2524464_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524476_2524710_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525344_2528314_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528328_2528538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528689_2529319_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2529315_2531406_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531429_2532110_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532106_2532667_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532673_2533771_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533923_2534517_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534513_2535806_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535819_2536362_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536371_2537208_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537241_2538303_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538344_2539397_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539412_2539715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539856_2540807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2540824_2540989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2540985_2542680_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542676_2543762_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543809_2544709_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544719_2545364_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546385_2549628_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549638_2550793_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551019_2551982_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552080_2553031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553129_2554080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554089_2554779_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554838_2555276_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555321_2556215_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556262_2557435_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557431_2558586_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2558782_2559133_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559122_2559557_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559573_2560524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560671_2561139_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561119_2562277_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562342_2563269_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563386_2564337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	2606617	2673117	4105345	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606617_2607568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607937_2608510_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608512_2609523_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609515_2610016_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610026_2610368_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2610379_2611171_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611187_2611457_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611479_2612268_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612314_2613331_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613547_2614990_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615168_2616788_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616908_2618729_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618807_2620340_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2620373_2622020_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622089_2623112_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623129_2624263_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624265_2624955_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624954_2625740_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625783_2626548_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626586_2628008_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628073_2628778_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628825_2629245_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629257_2629665_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629848_2630559_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630685_2630976_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2630993_2631476_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635981_2637136_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637441_2638458_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638704_2639493_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639559_2640240_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640236_2641007_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641105_2642056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642111_2643029_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643039_2644218_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644237_2645233_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646821_2647430_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647417_2648458_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648475_2649438_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649434_2650628_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650624_2651422_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651447_2652434_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652452_2654492_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2654693_2655374_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655387_2656299_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656295_2656874_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657012_2657918_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657925_2661345_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661332_2663933_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664888_2665521_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665914_2666673_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2666669_2667872_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668059_2669010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669917_2671063_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671049_2671805_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671921_2672101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672166_2673117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	2872505	2945830	4105345	tRNA,transposase,protease	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2872505_2873861_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875339_2876062_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876116_2877100_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877229_2878180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878176_2879079_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879166_2879925_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879937_2881029_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881126_2882554_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882783_2883998_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884043_2886914_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889324_2889813_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889938_2892635_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892789_2895072_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2895245_2895869_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2895967_2896918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896964_2897519_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897586_2898432_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898501_2899470_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2899469_2900333_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2903165_2907092_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907827_2911058_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911339_2912167_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912200_2912896_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912888_2914169_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914178_2915156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915137_2916838_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916940_2918044_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918074_2918830_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918836_2920357_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920399_2920702_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920698_2921331_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921409_2923275_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923271_2924066_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924094_2925210_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926114_2926993_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926992_2927817_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_005012067.1|2927984_2928935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929147_2931997_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931978_2932707_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932847_2934311_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934307_2934679_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934696_2936010_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936046_2936505_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2936459_2936600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2936617_2937568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937564_2938578_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938717_2939704_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940062_2940770_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2941350_2942301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942452_2943055_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943073_2943706_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943750_2944002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943943_2945830_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	2957555	3007168	4105345	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2957555_2958506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958532_2958997_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960203_2962492_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962608_2963481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963523_2964678_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964712_2965543_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965626_2967171_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967213_2967573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967574_2967988_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968028_2968346_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968430_2969147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969410_2970832_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970898_2973646_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2973978_2974995_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975330_2975972_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976062_2977499_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977656_2978730_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978726_2979863_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2980007_2980352_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2980418_2982299_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2982348_2983284_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983616_2984633_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985570_2986998_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2986994_2988017_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988006_2988480_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988620_2989508_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989504_2991148_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2991144_2992194_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992982_2993999_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994098_2994731_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994739_2995129_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995181_2996234_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997097_2998804_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998877_2999378_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999392_3001450_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001476_3001770_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001871_3002819_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002831_3003707_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003827_3004388_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004422_3004746_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005181_3005919_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006217_3007168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	3015378	3077533	4105345	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3015378_3016512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3016615_3017257_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3017411_3019760_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3019756_3020695_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3020720_3021911_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3021907_3022681_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3022710_3023904_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3024021_3025032_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3025049_3027086_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3027280_3028021_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3028119_3029070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029112_3030288_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030509_3032300_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032312_3033974_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033986_3036692_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036984_3038739_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038735_3039362_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039358_3040210_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3040285_3042400_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042586_3043201_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043346_3043598_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043667_3045050_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045046_3048226_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049033_3049951_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050002_3050734_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050793_3051366_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052874_3053891_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054028_3055078_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055182_3056133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3056231_3057182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3057277_3058003_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3058213_3058594_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058899_3059772_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059779_3060160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3060313_3061588_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063075_3063984_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064781_3065846_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3067682_3068684_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068906_3069548_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069630_3071457_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071700_3072630_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072629_3073379_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3073450_3074365_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3074384_3075530_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3075590_3076502_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3076582_3077533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	3096955	3152085	4105345	transposase	Bacillus_phage(28.57%)	48	NA	NA
WP_005012808.1|3096955_3097906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3098035_3098428_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098704_3099616_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099740_3100715_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100711_3101662_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3101760_3102846_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3102943_3103354_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3103969_3105883_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3106018_3108631_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3108632_3109367_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3109530_3110712_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3110708_3110921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3110917_3111898_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3111943_3112771_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3112920_3114735_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3114789_3115173_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3115169_3116120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3116232_3116484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3116989_3118108_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3118227_3118440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3118599_3118821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3118873_3119824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3121000_3122371_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3122403_3123195_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3123207_3124263_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_077069047.1|3124288_3125164_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_023852826.1|3125269_3125518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3125552_3127007_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3127003_3127525_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3127553_3128906_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3129129_3132018_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3134162_3135464_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3135478_3136195_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3136476_3137157_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3137168_3137336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3137444_3137591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3137684_3138344_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3138742_3140575_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3140571_3141522_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3142685_3144401_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3144411_3144903_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3144975_3145992_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3146159_3146939_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3146957_3147485_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3147778_3148048_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3148138_3150298_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3150418_3151138_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3151134_3152085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	3233145	3306307	4105345	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3233145_3234096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234092_3235112_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235121_3237830_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237977_3238634_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238732_3239683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239830_3240724_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240923_3242618_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242652_3243579_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243647_3244745_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244763_3245627_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245638_3246421_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246417_3247536_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247532_3249065_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249105_3250113_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250257_3250980_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3250995_3252018_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252334_3253069_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253153_3254899_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254895_3255648_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255692_3256649_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256737_3257304_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257311_3258172_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258201_3258930_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3258961_3259645_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260482_3261397_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261461_3262370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262460_3263885_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263886_3265209_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265205_3267344_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267421_3272542_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272642_3272951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273020_3273578_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273593_3275075_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3277245_3278583_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278617_3280615_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280632_3282681_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282811_3283678_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283946_3284912_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285026_3286175_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3286599_3286911_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286944_3287205_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287354_3288488_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288558_3289695_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289860_3290655_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290717_3291161_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291276_3292227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3292328_3292757_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3292829_3295025_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295246_3296197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296156_3296681_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296812_3297784_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297903_3300348_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300363_3300954_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301197_3302148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3302305_3303571_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3303604_3304702_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3305356_3306307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	3317594	3417707	4105345	tRNA,tail,transposase,terminase,protease	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3317594_3318545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319276_3319654_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319638_3320340_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320483_3321176_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321175_3322279_-	phosphotransferase	NA	NA	NA	NA	NA
WP_077069048.1|3322388_3324761_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324757_3326317_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326341_3327139_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327170_3328316_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328420_3329863_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329865_3331095_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333232_3334183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335312_3335870_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335845_3336196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336364_3337159_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337155_3338205_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338204_3338894_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338980_3339478_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339509_3340826_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340842_3341817_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341853_3342312_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342311_3342992_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3342994_3343423_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343475_3345206_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345271_3345844_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345824_3346511_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346866_3347538_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347866_3348088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348087_3348369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348365_3348881_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348880_3349432_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349410_3349653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349657_3350470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350469_3350733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350773_3350971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350951_3351368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351372_3355329_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355321_3355711_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355707_3356241_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356308_3356668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356677_3359290_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359315_3359606_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359623_3359953_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359962_3360481_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360735_3361236_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361243_3361666_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361662_3362061_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362057_3362453_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3362452_3362653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362654_3363137_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363199_3363451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364125_3365076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365504_3366107_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366229_3366472_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366477_3367533_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367561_3368980_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368982_3370260_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370246_3370732_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371371_3372322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3372339_3372561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3372578_3373268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373260_3373512_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3374066_3374678_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374749_3374956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375207_3376158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376256_3377330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377497_3378292_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378331_3378856_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378848_3380591_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380800_3381559_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381561_3382269_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382285_3383167_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383177_3383936_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383904_3384660_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384729_3386148_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386169_3386820_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386953_3387289_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387377_3388328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388404_3390225_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390229_3391303_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391425_3392394_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392467_3393379_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393397_3393970_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394050_3394599_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394598_3396188_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396257_3396497_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396537_3397563_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397628_3398810_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398906_3399359_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399368_3400709_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3401025_3402063_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402444_3402804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402887_3403829_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403903_3404854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405147_3406242_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3406323_3407205_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407226_3408066_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408141_3409659_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409755_3410856_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410872_3411295_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3411317_3411530_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411576_3412497_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412679_3413429_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413431_3413761_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3413967_3415401_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3415412_3415796_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415857_3416658_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416756_3417707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013087	Bordetella pertussis strain H771 chromosome, complete genome	4105345	4027516	4080948	4105345	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4027516_4028467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028636_4029863_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030062_4030929_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030921_4031884_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031984_4032935_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033033_4033984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034082_4035033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035029_4036523_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036519_4039627_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039623_4042692_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042688_4043939_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044119_4044881_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044913_4045564_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045566_4046406_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046646_4047390_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4047472_4047820_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047917_4048760_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048804_4049692_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049718_4049907_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050004_4051462_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051448_4052975_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052993_4053461_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4053460_4054483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4054603_4055323_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4055398_4056499_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056500_4057691_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057810_4058827_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059145_4059817_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059813_4060722_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060933_4061581_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065432_4066509_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066519_4067329_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067418_4068192_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068192_4068357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068374_4069325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069213_4070236_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070225_4071380_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4071419_4072832_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072956_4073823_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073824_4074649_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4074645_4075407_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4075487_4076174_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076347_4077355_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077351_4078131_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078188_4079451_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4079997_4080948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
