The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	27282	70036	4102201	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	77634	136108	4102201	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	164892	225391	4102201	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023995109.1|184325_187988_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188048_188612_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188619_189042_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189069_189489_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189517_189964_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190090_190588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190742_193013_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193088_194294_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194392_195343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195445_196081_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196077_196971_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197365_198466_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198547_198922_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198981_201846_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201990_202731_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202800_204012_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204040_205009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205622_206573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206729_207053_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_162494541.1|207157_208198_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208203_208983_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209028_209325_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209350_209626_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209682_210327_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210326_211013_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211211_211994_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212044_212770_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212801_214151_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214262_215195_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215652_218448_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219041_221885_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222055_222775_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222813_223362_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223516_224416_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012067.1|224440_225391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	233323	286911	4102201	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233323_234274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826594.1|234360_235311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235307_236258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236356_237154_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238103_238514_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239535_240279_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240322_241366_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241536_243639_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245049_246006_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246024_246516_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246512_247868_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247868_248567_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248563_249265_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249517_250567_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250672_251614_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251610_253500_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253586_254225_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254367_255753_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255683_256220_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256371_257763_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257779_258760_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258895_259879_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259943_260843_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260949_262704_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262711_263836_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263849_264830_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265560_266511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267070_267616_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267741_269319_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269334_270489_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270502_270628_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270624_272376_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272372_274052_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274114_274663_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275805_276084_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277127_278078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278064_278280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278355_278517_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279183_279633_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279642_280254_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280412_281261_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281286_282669_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282733_283375_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283514_283973_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|283997_284774_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284827_285964_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285960_286911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	412373	483236	4102201	transposase,tRNA	Heterosigma_akashiwo_virus(14.29%)	60	NA	NA
WP_010929577.1|412373_413324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413412_414327_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414323_414983_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415072_415996_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416001_416457_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416453_417557_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417515_417785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417744_419364_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419360_420419_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420548_421043_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421135_422113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422308_423514_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423510_425022_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425037_426351_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426541_426721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427130_427865_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430309_431260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815668.1|431256_431664_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247835.1|431660_432329_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815671.1|432947_433919_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815672.1|434025_434988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929934.1|435106_436828_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|436871_438002_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929936.1|438015_439206_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929937.1|439386_440406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929938.1|440538_441711_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_003815682.1|441703_442378_-	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929939.1|442388_442817_-	RidA family protein	NA	NA	NA	NA	NA
WP_003815690.1|442847_444122_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929940.1|444486_445470_+	oxidoreductase	NA	NA	NA	NA	NA
WP_010929941.1|445553_446498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929942.1|446645_448787_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929943.1|448786_449566_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815697.1|449964_450858_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929944.1|450921_451941_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929945.1|451997_452978_+	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929946.1|453175_455008_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929947.1|455157_455646_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929948.1|455667_456852_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929949.1|456881_458999_-	crotonase	NA	NA	NA	NA	NA
WP_010929950.1|459256_461059_+	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929951.1|461140_462127_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929952.1|462178_464368_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929953.1|464364_465162_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929954.1|465158_465995_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929955.1|466014_468390_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|468488_469439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|469543_469774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|469900_470290_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|470306_472688_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|472680_474057_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|474072_475068_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|475086_476079_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|476319_476880_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|476884_477211_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|477247_478060_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|478070_479153_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|479239_480514_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|481236_482187_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|482285_483236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	496624	556247	4102201	transposase,tRNA	Vibrio_phage(25.0%)	49	NA	NA
WP_010929969.1|496624_497575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|499008_500295_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|500460_500769_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|500790_501435_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|501475_503266_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|503378_504239_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|504235_505441_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|505437_506322_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|507838_508273_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|508235_509234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|509345_510491_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|510565_511894_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|511927_512518_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|512807_513602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|514771_515506_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|515512_516379_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|516386_518162_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|518204_518702_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|518998_519949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|520047_520998_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|521338_522289_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|524612_525761_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|525805_526429_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|526581_527574_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|527570_528308_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|528387_529209_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|529297_530161_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|530287_530524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|532498_533533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|533591_534569_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|534576_535497_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|535493_537194_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|537196_538102_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|538145_539279_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|539407_540358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|540456_542526_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|542568_544671_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|544977_546054_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|546129_547014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|547196_547619_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|547628_549029_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|549071_549977_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|550075_551617_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|551651_552191_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|552203_552674_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|552811_553054_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|553170_554052_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|554124_554445_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|555296_556247_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	561573	630696	4102201	transposase,tRNA	Acinetobacter_phage(25.0%)	56	NA	NA
WP_010931381.1|561573_562536_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562634_563585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563597_564533_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564592_565432_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565428_566598_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566594_567884_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567926_568301_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568415_569144_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569151_569856_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570119_571640_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571695_572259_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572277_573309_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573305_574094_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574269_575259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577015_577966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579188_580091_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580092_580947_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|580993_582103_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582113_582632_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582661_583294_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583365_584025_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584021_585161_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585510_586383_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586538_587276_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587278_588910_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589005_589995_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|589991_590702_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590797_591814_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592085_592712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592767_593895_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593900_599618_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600185_601130_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601318_602254_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602371_603943_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604022_605231_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605728_606646_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609006_609228_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609558_610575_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610659_610911_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610914_611730_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611842_612721_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612832_614596_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|614711_616052_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|617121_618546_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|618545_619247_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|620751_621702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621797_622769_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622773_623454_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623591_623984_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624091_625108_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625347_626133_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626227_627637_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627647_628448_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628468_629239_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629281_629749_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629745_630696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	673541	750850	4102201	transposase,integrase,protease,tRNA	Bacillus_phage(20.0%)	58	720678:720696	740566:740584
WP_023995489.1|673541_674492_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674590_676066_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677653_678541_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678543_679485_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679530_681096_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682873_684199_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684381_685839_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685802_686300_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686330_687302_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|687354_687786_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687915_688584_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689312_690416_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|690521_691796_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691807_692833_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692834_694205_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|694205_695342_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695388_697314_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697310_698432_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698428_699583_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699579_700710_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700717_702283_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702289_703672_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703950_704562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704653_706069_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706086_706797_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706793_708116_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708195_710157_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710282_711596_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711704_713003_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713185_714094_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714103_714313_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714324_716004_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716105_717059_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717149_717977_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717975_719862_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719858_720458_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720506_721406_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720678:720696	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721614_722565_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722687_723302_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723430_724027_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724023_724806_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724878_725970_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726249_727377_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727718_728765_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729275_732032_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732033_734985_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735000_736212_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736208_736409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736395_737346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737362_737857_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737860_738118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738661_739573_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739654_739939_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740722_741673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740566:740584	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742091_744656_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744700_746554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746886_748458_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749899_750850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	996783	1099176	4102201	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996783_997899_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|997999_998818_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998915_999527_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999686_1001063_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001125_1001584_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001668_1002364_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1002425_1002707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003269_1004022_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004066_1005143_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005139_1006090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006192_1006855_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006949_1007120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007472_1008474_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008476_1009673_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009693_1010497_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010577_1010874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010904_1011468_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011508_1012366_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012373_1013123_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013144_1014017_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014045_1014825_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014858_1015656_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018310_1018703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018696_1019557_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019560_1020523_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021299_1021989_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022849_1023800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024149_1025019_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025089_1025785_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025774_1026284_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026280_1027501_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027448_1028351_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029237_1030524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030562_1031936_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031974_1032676_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032974_1033964_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034064_1034526_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034541_1035090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035231_1036707_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036812_1037904_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037907_1038690_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038699_1039488_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040613_1041048_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041044_1042055_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042098_1043025_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043311_1043680_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043896_1044847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044891_1047318_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_077123493.1|1047366_1048059_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	30.8	8.0e-07
WP_010931163.1|1048131_1049331_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049348_1050254_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050369_1051299_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051324_1052671_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052683_1053448_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053461_1054244_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054436_1055387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055448_1056558_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057070_1057907_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058033_1058942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058938_1059889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060274_1060817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061852_1062803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063044_1063413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063458_1064583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065717_1066458_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066561_1067182_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067285_1068236_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068232_1070341_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070485_1071145_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071176_1071641_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071916_1072102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072153_1072906_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072912_1074175_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074216_1075455_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076532_1077660_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077670_1078498_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078484_1079351_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080717_1081122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081213_1082164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082533_1083445_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083459_1084170_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084166_1085411_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085412_1085847_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085875_1086181_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086279_1087230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087286_1088435_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088515_1089466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1089997_1090795_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090842_1091496_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091452_1092541_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092705_1094931_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097208_1098105_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098225_1099176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	1129562	1200532	4102201	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129562_1130513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130569_1131682_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134065_1135016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135606_1136383_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136500_1136764_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136864_1137869_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138069_1139671_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139696_1140455_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140546_1141203_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141293_1142058_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142067_1142256_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142311_1143355_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143351_1143765_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143761_1144382_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144662_1145613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145780_1147172_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147244_1147823_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147939_1149337_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149452_1150658_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150757_1151276_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151370_1151616_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151843_1152158_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152256_1157437_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157433_1159602_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159657_1161973_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161977_1163297_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163315_1164989_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1164993_1165662_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165818_1169640_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169970_1170921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170942_1172088_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172236_1173166_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173162_1174251_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174247_1175051_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175047_1175779_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175836_1177126_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177222_1177825_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182377_1182716_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183423_1183690_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185396_1186347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186343_1187675_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188935_1190936_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190928_1191570_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191566_1191974_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191970_1192771_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192845_1193550_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193581_1194376_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194372_1195323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195421_1196372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196470_1196905_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1196987_1199324_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199515_1200532_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	1247926	1328801	4102201	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247926_1248877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248873_1249824_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250084_1251113_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251192_1252491_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252487_1253069_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253381_1257428_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257668_1265330_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265326_1266277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267416_1267890_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268029_1268650_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1268785_1269586_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269640_1270732_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1270753_1271197_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271225_1271858_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271968_1272385_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272377_1273070_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273176_1273551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1273627_1274437_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274532_1275477_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275515_1276487_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276577_1277015_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277073_1277955_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278958_1279819_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279851_1281234_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281230_1282250_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282622_1283117_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283124_1283865_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283945_1285550_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285589_1286378_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1286503_1288669_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1289549_1290362_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290374_1290683_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290800_1292531_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1292532_1293735_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1293807_1294476_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294597_1295065_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295200_1296583_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296579_1297704_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297700_1300337_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300752_1301703_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305449_1306061_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306283_1307744_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307840_1309433_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309786_1310044_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310045_1311386_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311481_1312171_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312183_1313614_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315338_1316160_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316170_1317742_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317770_1318748_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318774_1319578_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319574_1320369_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320376_1321612_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1321625_1322039_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322788_1323739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324360_1326088_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326199_1327558_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327850_1328801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	1349672	1369568	4102201	transposase,tRNA	Salmonella_phage(33.33%)	22	NA	NA
WP_010929591.1|1349672_1350623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1350619_1351654_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351762_1352401_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352695_1352923_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353045_1353759_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1354003_1354954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1355093_1355339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355453_1356902_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1357012_1357963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1357959_1358409_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010931532.1|1358603_1359554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|1359652_1360603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1360938_1361136_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1361151_1361511_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1361585_1362608_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1362620_1365038_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1365055_1365385_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1365443_1365854_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1366353_1367445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1367628_1368225_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1368324_1368507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1368617_1369568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	1449245	1501398	4102201	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1449245_1450196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450362_1450716_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450728_1451091_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451132_1451558_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451760_1453017_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453215_1454196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454345_1455587_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455685_1456636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456644_1457340_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460161_1460761_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460771_1462937_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462960_1464745_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464744_1464834_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465528_1465801_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465800_1467867_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467863_1468814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468912_1469863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469978_1470311_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470307_1470994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470980_1471940_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1471972_1474342_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474341_1474974_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475075_1476416_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476462_1477818_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1478108_1478345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478532_1478850_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479122_1479638_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1479908_1480664_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481002_1481209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481216_1481876_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482170_1484375_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484485_1485709_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485831_1486806_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486873_1488067_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488081_1488882_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488878_1490735_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490731_1491337_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491355_1492741_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493466_1494693_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494781_1495564_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495662_1496613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496639_1497413_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497424_1498666_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500447_1501398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	1545323	1605235	4102201	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1545323_1545812_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1545929_1546508_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546613_1546982_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1547080_1548031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548037_1549150_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549836_1551039_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551242_1553903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553915_1557320_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1557987_1560213_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560259_1560586_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560636_1561245_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561343_1562294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562363_1563128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1563124_1563661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1563827_1564679_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564738_1565365_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565361_1566312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1566410_1567361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1567459_1568572_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1568561_1569563_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1569668_1571180_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1571176_1572481_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1572592_1573153_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1573420_1573975_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1574430_1574646_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1574900_1577498_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1577494_1578682_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1579340_1579955_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1580043_1581165_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1581182_1582088_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1582980_1583931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1584112_1584865_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1584933_1585593_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1585589_1586318_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1586330_1588610_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1588634_1588838_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1588879_1589512_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1589647_1590565_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1590561_1591275_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1591512_1592283_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1592287_1592887_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1593131_1594622_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1594680_1594965_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1595530_1596457_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1596593_1597334_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1597500_1598877_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1599058_1599964_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1601615_1603418_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1603535_1604186_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1604284_1605235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	1650407	1705998	4102201	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1650407_1651358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1651416_1652190_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1652182_1653739_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1653735_1654686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1656012_1656615_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1656854_1657556_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1657549_1658332_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1658516_1659467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1659565_1660303_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1660492_1661251_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1661297_1662287_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1662464_1663433_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664972_1665941_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665949_1666891_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1667364_1668375_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1668365_1669880_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1669876_1671223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1671225_1672260_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1672309_1673935_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1674487_1675438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1675542_1676490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1676543_1678358_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1678350_1679025_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1679154_1682229_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1682242_1682542_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1682856_1683480_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1683723_1684593_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1684570_1685515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1685600_1686527_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1686639_1687419_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1687409_1688606_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1688636_1689587_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1689808_1690498_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1690562_1691318_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1691369_1692362_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1692371_1693325_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1693440_1694403_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1695804_1696233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1696229_1697180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1697473_1698196_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1698634_1699822_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1699825_1700176_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1701925_1702897_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1702910_1703624_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1703628_1704546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1704652_1704949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1705047_1705998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	2026173	2074187	4102201	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|2026173_2027124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2027222_2029823_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2029929_2030934_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2031042_2032383_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2032423_2033452_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2033647_2034193_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2034189_2034750_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2034848_2035799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2035836_2036424_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2036441_2036825_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2038184_2039477_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2039611_2040652_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2040749_2041766_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|2042033_2042669_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2042806_2043565_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2043549_2044329_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2044346_2045231_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2045227_2046007_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|2046033_2046711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2046999_2047752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2047870_2049271_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2049294_2049693_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2049868_2050069_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2050207_2050936_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2051069_2052485_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2052488_2053352_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2053364_2054114_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|2054356_2056312_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|2056293_2056962_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2057735_2058686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2058784_2059735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2059883_2060222_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2060279_2060441_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2060472_2060673_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2060938_2063512_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2063582_2066132_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2068682_2069171_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2069262_2070414_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2070467_2071289_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2071327_2072557_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2072685_2073126_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2073236_2074187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	2135748	2195018	4102201	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2135748_2136699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2136823_2137633_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|2137833_2138784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2140057_2141275_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2142331_2143234_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2143310_2144183_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2144313_2144682_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2144739_2145786_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2145981_2147238_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2147242_2148580_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2148729_2149686_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2149788_2150721_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2150836_2151157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2151149_2151509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2151556_2153131_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2153183_2154128_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2154145_2154976_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2154968_2156603_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2156599_2157955_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2158861_2160439_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2160442_2161717_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2161814_2162189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2163904_2165038_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2165075_2165681_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2165677_2166496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2166567_2169192_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2169178_2169433_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2169499_2170081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2170384_2170645_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2170810_2171434_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2171433_2172207_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2172203_2173412_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2173437_2173911_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2173984_2174935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2175033_2175984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2176082_2177432_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2178197_2178953_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2179045_2181928_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2182250_2182676_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2182703_2183852_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2183848_2184355_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|2184370_2185657_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|2185706_2187002_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2187003_2187642_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|2187647_2188805_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2188831_2190187_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2190190_2191261_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2191399_2191636_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2191723_2192830_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2192795_2194100_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2194118_2195018_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	2205258	2262755	4102201	transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_005013747.1|2205258_2206209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2206307_2207258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2207457_2208543_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2208558_2209320_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|2209316_2210240_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|2210338_2210863_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2210871_2211615_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2211710_2211950_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2211963_2212116_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2212201_2213692_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2213783_2214722_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2214718_2214895_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2214897_2215560_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2217181_2217325_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2217321_2218296_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2218462_2219413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2219409_2220684_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2220787_2221981_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2221977_2222631_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2222627_2224064_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2224051_2224411_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162493101.1|2225225_2225366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|2226330_2228196_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2228453_2229974_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2230061_2230712_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2231660_2232956_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2232977_2233862_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2233960_2234836_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2234825_2235182_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2235312_2236287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2236416_2236596_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2236693_2237218_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2237228_2238065_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2238177_2238549_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2238545_2239097_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2239112_2240804_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2240852_2241533_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2241780_2242245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2242414_2243344_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2243356_2244004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2244077_2245895_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2245978_2246929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2247581_2248532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2248550_2248898_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2248926_2250366_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2250384_2250780_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2250954_2251563_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2251575_2252394_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2252345_2253320_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2253348_2254410_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2254406_2256623_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2256636_2257095_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2257252_2257597_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2257753_2258659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2258745_2259759_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2261738_2262755_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	2278305	2342674	4102201	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2278305_2279256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2279477_2280428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2280526_2281492_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2281629_2282529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2285123_2286611_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2286621_2287818_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2287890_2289210_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2289206_2290082_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2290112_2291261_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2291278_2291593_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2291614_2292337_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2292336_2293155_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2293159_2293687_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2293692_2294949_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2295307_2296447_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2296524_2297397_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2298267_2299218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2299177_2299813_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2300172_2301495_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2301813_2302635_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2304059_2304632_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2304671_2306501_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2306463_2307522_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2307559_2308021_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2308105_2308852_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2310342_2313573_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2313639_2314971_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2315223_2315598_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2315700_2316879_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2316889_2317480_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2317590_2318397_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2318422_2319217_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2320217_2321192_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2321350_2321863_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2322019_2322991_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2324735_2325542_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2325538_2326840_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2326790_2327555_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2327668_2328439_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2328523_2329711_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2329783_2330158_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2330258_2331521_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2331517_2332375_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2332547_2333549_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2334000_2334951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2336514_2337666_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2338034_2338271_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2338334_2338502_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2338615_2340511_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2340674_2341625_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2341723_2342674_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	2507135	2565379	4102201	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2507135_2508086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508565_2509222_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509236_2510904_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510906_2511536_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511747_2512842_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2512986_2513799_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2513802_2515386_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2515556_2516687_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516873_2517950_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2518031_2518682_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2518696_2520100_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520383_2521202_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2521198_2521903_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522802_2523918_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523951_2524326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524348_2525506_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525518_2525752_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526386_2529356_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529370_2529580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529731_2530361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2530357_2532415_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2532471_2533152_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_077123495.1|2533148_2533709_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533715_2534813_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2534965_2535559_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535555_2536848_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536861_2537404_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537413_2538250_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538283_2539345_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539386_2540439_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540454_2540757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2540898_2541849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2542027_2543722_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543718_2544804_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544851_2545751_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545761_2546406_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547427_2550670_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2550680_2551835_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2552061_2553024_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2553122_2554073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554171_2555122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2555131_2555821_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555880_2556318_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2556363_2557257_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2557304_2558477_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2558473_2559628_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2559824_2560175_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2560164_2560599_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2560615_2561566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2561713_2562181_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2562161_2563319_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2563384_2564311_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2564428_2565379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	2607659	2674159	4102201	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607659_2608610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608979_2609552_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609554_2610565_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610557_2611058_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611068_2611410_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2611478_2612213_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612229_2612499_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612521_2613310_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613356_2614373_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614589_2616032_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616210_2617830_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617950_2619771_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619849_2621382_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2621415_2623062_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623131_2624154_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624171_2625305_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625307_2625997_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2625996_2626782_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626825_2627590_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627628_2629050_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629115_2629820_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629867_2630287_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630299_2630707_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630890_2631601_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631727_2632018_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632035_2632518_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637023_2638178_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638483_2639500_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639746_2640535_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640601_2641282_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641278_2642049_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642147_2643098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643153_2644071_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644081_2645260_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645279_2646275_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647863_2648472_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648459_2649500_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649517_2650480_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650476_2651670_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651666_2652464_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652489_2653476_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653494_2655534_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2655735_2656416_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656429_2657341_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657337_2657916_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658054_2658960_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658967_2662387_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662374_2664975_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665930_2666563_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666956_2667715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2667711_2668914_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669101_2670052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670959_2672105_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672091_2672847_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672963_2673143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673208_2674159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	2856574	3007174	4102201	transposase,holin,tRNA	uncultured_Mediterranean_phage(15.79%)	117	NA	NA
WP_010929956.1|2856574_2857525_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857623_2858505_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858582_2859962_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2860000_2860846_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860861_2861176_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861208_2861745_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861917_2862493_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862595_2863333_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863400_2865038_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865145_2865901_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865888_2866851_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866958_2867753_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867814_2869890_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870054_2872430_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872510_2873866_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875344_2876067_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876121_2877105_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877234_2878185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878181_2879084_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879171_2879930_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879942_2881034_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881131_2882559_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882788_2884003_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884048_2886919_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889329_2889818_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889943_2892640_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892794_2895077_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895242_2895875_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895973_2896924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896970_2897525_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897592_2898438_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898507_2899476_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899475_2901272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2903171_2907098_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907833_2911064_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911345_2912173_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912206_2912902_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912894_2914175_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914184_2915162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915143_2916844_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916946_2918050_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918080_2918836_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918842_2920363_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920405_2920708_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920704_2921337_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921415_2923281_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923277_2924072_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924100_2925216_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926120_2926999_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926998_2927823_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927990_2928941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929153_2932003_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931984_2932713_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932853_2934317_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934313_2934685_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934702_2936016_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936052_2936511_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936623_2937574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937570_2938584_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938723_2939710_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940068_2940776_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941356_2942307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942458_2943061_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943079_2943712_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943756_2944008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943949_2945836_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945854_2946697_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946693_2948052_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948272_2949067_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949297_2950791_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951026_2953108_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953302_2954343_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954477_2955494_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955515_2956373_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956417_2957194_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2957561_2958512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958538_2959003_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960209_2962498_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962614_2963487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963529_2964684_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964718_2965549_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965632_2967177_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967219_2967579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967580_2967994_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968034_2968352_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968436_2969153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969416_2970838_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970904_2973652_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2973984_2975001_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975336_2975978_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976068_2977505_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977662_2978736_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978732_2979869_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2980013_2980358_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2980424_2982305_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2982354_2983290_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983622_2984639_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985576_2987004_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987000_2988023_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988012_2988486_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988626_2989514_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989510_2991154_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991150_2992158_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992988_2994005_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994104_2994737_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994745_2995135_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995187_2996240_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997103_2998810_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998883_2999384_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999398_3001456_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001482_3001776_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001877_3002825_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002837_3003713_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003833_3004394_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004428_3004752_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005187_3005925_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006223_3007174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	3028125	3100619	4102201	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3028125_3029076_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029118_3030294_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030515_3032306_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032318_3033980_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033992_3036698_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036990_3038745_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038741_3039368_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039364_3040216_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040345_3042406_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042592_3043207_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043352_3043604_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043673_3045056_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045052_3048232_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049039_3049957_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050008_3050740_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050799_3051372_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052880_3053897_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054034_3055084_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055188_3056139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056234_3056960_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057170_3057551_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057856_3058729_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058736_3059117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059270_3060545_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062032_3062941_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063738_3064803_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3066639_3067674_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067863_3068505_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068587_3070414_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070657_3071587_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071586_3072336_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072407_3073322_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073341_3074487_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074547_3075459_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075539_3076490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076588_3077173_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077207_3078197_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078193_3079135_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079131_3080352_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080394_3080709_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080900_3081260_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081261_3082977_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083164_3083836_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083850_3085179_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085175_3086075_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086161_3087247_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087239_3088370_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088372_3091054_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091424_3092006_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092131_3092857_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092853_3093531_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093746_3094928_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095700_3095883_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095912_3096863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096992_3097385_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097661_3098573_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098697_3099672_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099668_3100619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	3232102	3301105	4102201	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_010930048.1|3232102_3233053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233049_3234069_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234078_3236787_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236934_3237591_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237689_3238640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238787_3239681_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239880_3241575_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241609_3242536_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242604_3243702_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243720_3244584_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244595_3245378_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245374_3246493_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246489_3248022_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248062_3249070_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249214_3249937_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249952_3250975_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251291_3252026_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252110_3253856_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253852_3254605_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254649_3255606_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255694_3256261_+	membrane protein	NA	NA	NA	NA	NA
WP_023997539.1|3256268_3257129_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257158_3257887_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257918_3258602_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259439_3260354_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260418_3261327_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261417_3262842_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262843_3264166_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264162_3266301_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266378_3271499_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271599_3271908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271977_3272535_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272550_3274032_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3274086_3275940_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276202_3277540_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277574_3279572_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279589_3281638_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281768_3282635_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282903_3283869_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283983_3285132_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3285556_3285868_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285901_3286162_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286311_3287445_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287515_3288652_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288817_3289612_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289674_3290118_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290233_3291184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291306_3291714_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291786_3293982_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294203_3295154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295113_3295638_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295769_3296741_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296860_3299305_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299320_3299911_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300154_3301105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	3316551	3416664	4102201	tail,tRNA,terminase,transposase,protease	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3316551_3317502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318233_3318611_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318595_3319297_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319440_3320133_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320132_3321236_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321345_3323718_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323714_3325274_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325298_3326096_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326127_3327273_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327377_3328820_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328822_3330052_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332189_3333140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334269_3334827_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334802_3335153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335321_3336116_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336112_3337162_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337161_3337851_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337937_3338435_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338466_3339783_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339799_3340774_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340810_3341269_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341268_3341949_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341951_3342380_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342432_3344163_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344228_3344801_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344781_3345468_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345823_3346495_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346823_3347045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347044_3347326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347322_3347838_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347837_3348389_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348367_3348610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348614_3349427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349426_3349690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349730_3349928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349908_3350325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350329_3354286_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354278_3354668_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354664_3355198_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355265_3355625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355634_3358247_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358272_3358563_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358580_3358910_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358919_3359438_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359692_3360193_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360200_3360623_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360619_3361018_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361014_3361410_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361409_3361598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361611_3362094_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362156_3362408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363082_3364033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364461_3365064_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365186_3365429_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365434_3366490_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366518_3367937_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367939_3369217_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369203_3369689_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370328_3371279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3371535_3372225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372217_3372469_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3373023_3373635_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373706_3373913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374164_3375115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375213_3376287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376454_3377249_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377288_3377813_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377805_3379548_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379757_3380516_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380518_3381226_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381242_3382124_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382134_3382893_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382861_3383617_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383686_3385105_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385126_3385777_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385910_3386246_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3386334_3387285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387361_3389182_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389186_3390260_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390382_3391351_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391424_3392336_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392354_3392927_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3393007_3393556_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393555_3395145_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395214_3395454_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395494_3396520_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396585_3397767_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397863_3398316_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398325_3399666_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3399982_3401020_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401401_3401761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401844_3402786_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402860_3403811_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404104_3405199_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405289_3406162_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406183_3407023_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407098_3408616_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408712_3409813_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409829_3410252_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410274_3410487_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410533_3411454_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411636_3412386_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412388_3412718_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3413005_3414358_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414369_3414753_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414814_3415615_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415713_3416664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	3702231	3835156	4102201	transposase,integrase,tRNA	uncultured_Mediterranean_phage(10.34%)	114	3746874:3746891	3791513:3791530
WP_005013747.1|3702231_3703182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3703178_3703814_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3703943_3704843_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3704938_3705430_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3705476_3706442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3707575_3708817_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3708930_3709947_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3709981_3710458_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3710600_3711509_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3711622_3712735_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3712835_3713321_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3713457_3714708_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3714809_3715322_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3715420_3716371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3716436_3717375_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3717397_3718024_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3718020_3718677_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3718673_3719276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3719282_3719870_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3720050_3720620_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3720690_3722010_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3722116_3722308_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3722559_3723849_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3724003_3724999_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3725083_3725758_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3725754_3726705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3726866_3728108_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3728104_3729049_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3729167_3730118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3730077_3731007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3731060_3731396_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3731440_3732205_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3732228_3732969_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3732976_3734530_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3734564_3735542_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3735814_3736396_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3736447_3743350_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3743796_3743928_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3744193_3744400_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3745404_3746064_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3746091_3747237_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3746874:3746891	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3747377_3747713_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3747787_3748648_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3748911_3749613_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3749782_3750178_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3750287_3751238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3751248_3751890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3752055_3752298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3752396_3753347_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3753382_3753850_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3754083_3754461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3754457_3754640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3754643_3755630_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3755626_3756274_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3756331_3756859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3756895_3758080_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3758090_3758432_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3758544_3758745_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3758741_3759731_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3761217_3763188_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3763429_3763828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3763836_3764760_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3765217_3766168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3766398_3768090_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3768138_3768411_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3768407_3768779_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3768874_3769009_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3769414_3770824_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3770826_3771936_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3772030_3774484_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3774602_3775394_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3775513_3776941_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3776979_3777951_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3778369_3779533_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3779620_3780466_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3782022_3782973_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3783527_3783902_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3783976_3785035_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3785058_3786009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3788890_3790060_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3790160_3791768_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3791513:3791530	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3791814_3793836_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3793864_3794110_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3794123_3795314_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3795509_3796475_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3796497_3797637_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3797848_3798811_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3798934_3800959_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3801155_3803399_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3803677_3804136_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3805063_3807685_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3807748_3810376_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3810527_3811592_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3811591_3812362_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3812370_3813204_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3813216_3813996_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3814069_3815503_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3815530_3816289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3816344_3818195_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3818288_3818765_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3818781_3819702_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3819808_3820309_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3820682_3821375_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3821683_3822634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3822630_3826404_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3826740_3828630_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3828641_3829535_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3829638_3830436_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3830432_3831284_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3831345_3832026_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3832053_3832389_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3832389_3833349_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3833369_3833858_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3834139_3835156_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013086	Bordetella pertussis strain H730 chromosome, complete genome	4102201	4001269	4066181	4102201	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4001269_4001755_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4001843_4001981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4001973_4002954_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4003220_4004030_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4004069_4004750_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4004743_4005202_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4005213_4005576_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4005658_4006342_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4006397_4006706_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4006724_4007039_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4007035_4009510_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4009517_4010909_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4010905_4011091_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4011069_4011771_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4011767_4012589_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4012569_4013694_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4013686_4014706_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4014911_4015802_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4016046_4016838_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4016920_4017295_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4017272_4018682_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4018674_4020057_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4020391_4021996_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4022073_4023045_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4023055_4023982_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4024372_4025323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025492_4026719_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026918_4027785_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027777_4028740_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028840_4029791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029889_4030840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030938_4031889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031885_4033379_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033375_4036483_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036479_4039548_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039544_4040795_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4040975_4041728_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4041769_4042414_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4042422_4043403_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043502_4044246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4044328_4044676_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044773_4045616_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045660_4046548_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046574_4046763_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046860_4048318_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4048304_4049831_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049849_4050317_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4050316_4051339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4051459_4052200_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4052254_4053355_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053356_4054547_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054666_4055683_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056001_4056673_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056669_4057578_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057789_4058437_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4062297_4063365_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063375_4064185_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064274_4065048_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4065230_4066181_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
