The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	27282	70036	4105094	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	77634	136108	4105094	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077108082.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	164892	225403	4105094	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	233335	287971	4105094	protease,transposase,tRNA	Bacillus_phage(25.0%)	46	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280423_281272_-	cytochrome c1	NA	NA	NA	NA	NA
WP_005012067.1|281529_282480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815815.1|283793_284435_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284574_285033_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285057_285834_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285887_287024_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287020_287971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	391904	449413	4105094	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391904_392855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392991_393909_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393905_394154_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394150_395356_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395428_396424_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396446_397667_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397663_398308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400038_400848_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401152_402106_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402204_403188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403114_403816_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403864_404635_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404631_405810_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405977_407684_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407680_408577_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408617_410207_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410256_411249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411317_411917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412377_413358_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413433_414384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414472_415387_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415383_416043_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416132_417056_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417061_417517_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417513_418617_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|418572_418845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418804_420424_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420420_421479_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421608_422103_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422195_423173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423368_424574_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424570_426082_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426097_427411_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427601_427781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428190_428925_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431369_432320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432451_432850_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433260_433731_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433819_434164_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434263_435664_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437452_437971_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438081_438837_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439032_440265_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440257_441043_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441109_442081_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442091_443069_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443194_444367_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444393_445422_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445487_446681_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448462_449413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	590234	703988	4105094	terminase,tRNA,protease,tail,transposase	uncultured_Caudovirales_phage(14.81%)	111	NA	NA
WP_010929956.1|590234_591185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591660_592551_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592547_593369_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593567_594059_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594077_595151_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595197_596301_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596376_596997_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597017_597527_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597581_597833_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597896_599030_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599037_599424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599420_601940_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602368_602707_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602703_603210_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603271_604072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604182_605124_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605217_606753_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608432_610283_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610286_611120_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611119_612061_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612312_613284_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613425_615714_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616020_616929_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616983_617949_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618023_619685_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619756_620467_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077070120.1|620615_621566_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|621859_622954_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|623044_623917_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|623938_624778_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|624853_626371_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|626467_627568_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|627584_628007_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|628029_628242_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|628288_629209_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|629391_630141_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|630143_630473_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|630760_632113_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|632124_632508_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|632569_633370_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|633468_634419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931477.1|634474_635287_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_003814178.1|635445_636294_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931478.1|636494_640889_+	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_010931479.1|640982_641960_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_003814172.1|642346_642925_+	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931480.1|643072_644122_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814165.1|644162_644897_-	arginyltransferase	NA	NA	NA	NA	NA
WP_010931481.1|645691_646273_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_010931482.1|646269_647181_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820995.1|647296_647698_+	DoxX family protein	NA	NA	NA	NA	NA
WP_010927005.1|647715_648318_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|648375_648759_-	membrane protein	NA	NA	NA	NA	NA
WP_010930176.1|649457_650408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|650506_651457_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651531_652473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|652556_652916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|653297_654335_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|654651_655992_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|656001_656454_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|656550_657732_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|657797_658823_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658863_659103_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659172_660762_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660761_661310_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661390_661963_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661981_662893_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662966_663935_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664057_665131_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665135_666956_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667032_667983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668071_668407_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668540_669191_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669212_670631_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670700_671456_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671424_672183_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672193_673075_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673091_673799_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673801_674560_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674769_676512_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676504_677029_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677068_677863_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678030_679104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679202_680153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680404_680611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680682_681294_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|681848_682100_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682092_682782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683038_683989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684628_685114_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685100_686378_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686380_687799_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|687827_688883_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688888_689131_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689253_689856_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690284_691235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691909_692161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692223_692706_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692719_692908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692907_693303_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693299_693698_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693694_694117_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694124_694625_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694879_695398_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695407_695737_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695754_696045_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696070_698683_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698692_699052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699119_699653_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699649_700039_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700031_703988_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	710154	764084	4105094	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710154_711885_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711937_712366_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712368_713049_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713048_713507_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713543_714518_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714534_715851_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715882_716380_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716466_717156_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717155_718205_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718201_718996_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719164_719515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719490_720048_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721177_722128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724265_725495_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725497_726940_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727044_728190_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728221_729019_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729043_730603_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730599_732972_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733081_734185_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734184_734877_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735020_735722_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735706_736084_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736815_737766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737925_738798_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739138_739357_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739396_740776_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740817_742215_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742254_743907_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743910_744795_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744794_745736_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745814_747434_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747600_748416_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748483_749053_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749053_750004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750658_751756_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751789_753055_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753212_754163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754406_754997_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755012_757457_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757576_758548_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758679_759204_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759163_760114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760335_762531_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762603_763011_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763133_764084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	886673	954649	4105094	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886673_887690_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887886_888870_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890468_891857_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891887_892877_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892987_894220_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894501_895302_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895324_897556_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898343_898790_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898811_899558_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899701_900679_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901312_901924_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901917_903135_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903275_904226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904222_904942_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905062_907222_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907312_907582_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907670_907877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907875_908403_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908421_909201_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909368_910385_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910457_910949_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910959_912675_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|913838_914789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914785_916618_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917016_917676_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918203_918884_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919165_919882_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919896_921198_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923342_926231_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926454_927807_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|927835_928357_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928353_929808_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|929842_930091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930196_931072_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931097_932153_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932165_932957_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932989_934360_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|935536_936487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936539_936761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936920_937133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937252_938371_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938467_938683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938876_939128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939240_940191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940187_940571_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940625_942440_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942589_943417_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943462_944443_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944439_944652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944648_945830_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945993_946728_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946729_949342_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949477_951391_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952006_952417_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952514_953600_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953698_954649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	998178	1071745	4105094	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998178_999129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999233_1000283_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010926548.1|1002946_1003519_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003578_1004310_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004361_1005279_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006086_1009266_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009262_1010645_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010714_1010966_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011111_1011726_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011912_1013973_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014102_1014954_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014950_1015577_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015573_1017328_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017620_1020326_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020338_1022000_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022012_1023803_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024024_1025200_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025242_1026193_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1026291_1027242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027340_1028081_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028275_1030312_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030329_1031340_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031457_1032651_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032680_1033454_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033450_1034641_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034666_1035605_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035601_1037950_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038104_1038746_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040075_1040228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040259_1040808_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1040826_1041312_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041489_1042428_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042430_1042748_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042793_1043738_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045418_1046069_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046122_1046458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046454_1047315_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047331_1047613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047686_1047950_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_010929591.1|1048193_1049144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049442_1050180_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050615_1050939_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050973_1051534_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051654_1052530_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052542_1053490_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053591_1053885_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053911_1055969_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055983_1056484_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056557_1058264_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059127_1060180_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060232_1060622_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060630_1061263_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061362_1062379_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063209_1064217_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064213_1065857_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1065853_1066741_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066881_1067355_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067344_1068367_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068363_1069791_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070728_1071745_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	1075498	1136525	4105094	holin,tRNA,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1075498_1076635_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076631_1077705_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077862_1079299_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079389_1080031_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080366_1081383_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1081715_1084463_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1084529_1085951_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086214_1086931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087015_1087333_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087373_1087787_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087788_1088148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088190_1089735_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089818_1090649_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090683_1091838_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091880_1092753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092869_1095158_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096364_1096829_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096855_1097806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098173_1098950_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098994_1099852_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099873_1100890_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101024_1102065_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102259_1104341_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104576_1106070_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106300_1107095_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107315_1108674_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108670_1109513_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109531_1111418_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111359_1111611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111655_1112288_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112306_1112909_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1113060_1114011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114591_1115299_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115657_1116644_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116783_1117797_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117793_1118744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1118856_1119315_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119351_1120665_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120682_1121054_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121050_1122514_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122654_1123383_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123364_1126214_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126426_1127377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127544_1128369_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128368_1129247_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130151_1131267_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131295_1132090_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132086_1133952_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134030_1134663_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134659_1134962_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135004_1136525_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	1317763	1386176	4105094	transposase	Planktothrix_phage(33.33%)	57	NA	NA
WP_005012808.1|1317763_1318714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319482_1320121_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321010_1321457_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321538_1322240_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322240_1323008_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323004_1324243_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324242_1325169_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325271_1326387_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326402_1327353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327706_1328288_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328284_1329118_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329328_1330642_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1330818_1331700_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331719_1332571_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332623_1333712_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1333822_1334950_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335184_1335796_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335894_1336845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337066_1337444_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337591_1338089_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338085_1338613_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338746_1339562_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1339574_1340756_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340803_1341697_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1341823_1342294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342419_1343247_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343275_1344052_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344048_1344324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344338_1344803_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1344814_1345516_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345625_1346126_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346208_1347387_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349014_1349350_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852799.1|1350969_1351314_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351420_1351960_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352052_1353003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1353101_1353509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1353741_1354173_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354354_1354759_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355995_1356319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356321_1357209_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357241_1357667_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1357738_1358092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358331_1358838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358876_1360208_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360267_1361083_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361079_1361934_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364996_1367540_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368906_1370661_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370657_1372778_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1372782_1374978_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374974_1378316_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381118_1382069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382134_1382314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382430_1383186_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383172_1384318_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385225_1386176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	1446667	1502155	4105094	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446667_1447618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448819_1449266_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449258_1450734_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450730_1451486_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451478_1452489_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452478_1454155_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454467_1454800_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454813_1455209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455218_1455545_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455541_1455868_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455794_1456817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456813_1457164_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457211_1457640_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457647_1459021_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459161_1459539_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459801_1461109_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461169_1462000_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461996_1462485_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462526_1464047_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464090_1464567_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465370_1467968_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467997_1468819_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469545_1470295_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470478_1471357_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471454_1472171_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472185_1472746_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472912_1473677_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473696_1474554_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474550_1475750_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475789_1477124_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477176_1479513_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479638_1480202_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480210_1481302_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481373_1481829_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481829_1482624_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482620_1483802_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483788_1484394_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484390_1485164_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485175_1486003_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486164_1488528_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488595_1489315_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489438_1489864_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489898_1490849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490966_1491893_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491958_1493116_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493096_1493564_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493711_1494662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494678_1495113_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495102_1495453_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495649_1496804_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1496800_1497973_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498020_1498914_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498959_1499397_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499456_1500146_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500155_1501106_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501204_1502155_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	1794725	1842740	4105094	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_077108087.1|1794725_1795676_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1795774_1798375_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798481_1799486_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799594_1800935_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1800975_1802004_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802199_1802745_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077108088.1|1802741_1803302_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803400_1804351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804388_1804976_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1804993_1805377_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1806736_1808029_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808163_1809204_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809301_1810318_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1810585_1811221_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811358_1812117_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1812101_1812881_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1812898_1813783_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1813779_1814559_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1814585_1815263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815551_1816304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816422_1817823_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1817846_1818245_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818420_1818621_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1818759_1819488_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819621_1821037_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821040_1821904_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1821916_1822666_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1822908_1824864_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1824845_1825514_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1826288_1827239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1827337_1828288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1828436_1828775_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828832_1828994_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1829025_1829226_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1829491_1832065_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1832135_1834685_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1837235_1837724_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837815_1838967_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1839020_1839842_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839880_1841110_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1841238_1841679_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1841789_1842740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	1846133	1908387	4105094	protease,tRNA,transposase	Lake_Baikal_phage(21.43%)	54	NA	NA
WP_010930542.1|1846133_1848995_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1848984_1849950_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1850009_1852004_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1852102_1853053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1853049_1853424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1853685_1854894_+	aminotransferase	NA	NA	NA	NA	NA
WP_003812546.1|1854890_1857191_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1857243_1859856_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_033446179.1|1860215_1862123_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|1862137_1863034_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1863040_1864180_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1864179_1865001_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1866571_1866901_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1867283_1868540_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1868614_1868896_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1868937_1869258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1869564_1869768_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|1869851_1870418_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1870763_1870964_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_076879561.1|1871075_1871654_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1871832_1873143_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1873145_1873799_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1873903_1875208_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1875396_1877850_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1877973_1878924_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1879151_1880375_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1880440_1881412_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1881478_1881880_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930562.1|1881899_1882697_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1882693_1883125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930563.1|1883121_1884279_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1884300_1885077_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1887289_1887958_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1887950_1888592_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|1888626_1889358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1889375_1889588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1890158_1891109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1892666_1893317_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1893445_1894648_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1894725_1896762_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1897014_1897506_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1897721_1898234_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1898251_1899463_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1899500_1899911_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1899912_1900236_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1900238_1900751_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1900880_1902743_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1902752_1903094_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1903093_1903288_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1903412_1904306_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1904302_1905253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1905377_1906187_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012067.1|1906387_1907338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1907436_1908387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	1936170	1976861	4105094	protease,tRNA,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_010930590.1|1936170_1938795_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1938781_1939036_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1939102_1939684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1939987_1940248_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1940413_1941037_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1941036_1941810_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1941806_1943015_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1943040_1943514_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1943587_1944538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1944636_1945587_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1945685_1947035_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1947800_1948556_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1948648_1951531_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1951853_1952279_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1952306_1953455_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1953451_1953958_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1953973_1955260_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1955309_1956605_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1956606_1957245_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1957250_1958408_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1958434_1959790_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1959793_1960864_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1961002_1961239_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1961326_1962433_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1962398_1963703_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1963721_1964621_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1964804_1965962_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1966038_1967334_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1967447_1967987_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1968264_1968477_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1968496_1970527_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1970552_1970747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1971212_1973495_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1973904_1974204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1974488_1974902_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1974861_1975812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1975910_1976861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	1988065	2037461	4105094	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_010929591.1|1988065_1989016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1989012_1990287_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1990390_1991584_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1991580_1992234_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1992230_1993667_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1993654_1994014_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1994828_1994969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1994986_1995937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1996982_1998848_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1999105_2000626_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2000713_2001364_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2002312_2003608_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2003629_2004514_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2004612_2005488_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2005477_2005834_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2005964_2006939_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2007068_2007248_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2007345_2007870_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2007880_2008717_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2008829_2009201_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2009197_2009749_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2009764_2011456_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2011504_2012185_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2012432_2012897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2013066_2013996_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2014008_2014656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2014729_2016547_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2016630_2017581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2018233_2019184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2019202_2019550_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2019578_2021018_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2021036_2021432_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2021606_2022215_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2022227_2023046_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2022997_2023972_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2024000_2025062_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2025058_2027275_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2027288_2027747_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2027904_2028249_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2028405_2029311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2029397_2030411_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2032390_2033407_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2033549_2034902_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2035076_2035373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2036510_2037461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	2298745	2360093	4105094	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2298745_2299696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299812_2300532_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2300704_2301691_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2301691_2302174_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2302177_2303461_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2303457_2304396_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2304392_2306102_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2306111_2307359_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308969_2310259_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2311396_2312170_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2312831_2313575_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2313649_2314390_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2314585_2315422_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2315472_2316243_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2316292_2317345_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2317341_2317968_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2317964_2318999_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2319177_2320194_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2320292_2321243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323983_2325273_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2325391_2325829_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325872_2327081_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2327227_2327692_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2327715_2328666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2329650_2330424_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2330420_2331419_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2331503_2332280_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2332435_2334040_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2334420_2335545_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2335671_2336295_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2336291_2338193_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2338241_2339036_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2339048_2340050_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2340046_2340496_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2340545_2341394_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2341491_2342034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2342077_2343028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2343183_2343510_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2343506_2343788_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2343787_2344267_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2344263_2345892_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345888_2346233_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2346232_2349166_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2350324_2351275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2351373_2351670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2351776_2352694_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2352698_2353412_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2353425_2354397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2356146_2356497_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2356500_2357688_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2358126_2358849_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2359142_2360093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	2380884	2452032	4105094	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2380884_2381835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2382387_2384013_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2384062_2385097_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2385099_2386446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2386442_2387957_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_077085662.1|2387947_2389429_-	DUF4381 family protein	NA	NA	NA	NA	NA
WP_010930479.1|2389425_2390367_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2390375_2391344_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392883_2393852_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2394029_2395019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2395065_2395824_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2396013_2396751_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2396849_2397800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397984_2398767_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2398760_2399462_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2399701_2400304_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2401630_2402581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2402577_2404134_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2404126_2404900_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404958_2405909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405990_2407166_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2407179_2409237_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2409233_2410259_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2410270_2411560_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2411582_2412680_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2412676_2413567_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2413563_2415648_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2415679_2416849_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2416890_2417631_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2417630_2418401_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2419256_2420042_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2420068_2422153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2422320_2424276_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2424599_2425100_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2425198_2426725_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2426862_2427750_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2427764_2428718_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2428769_2430860_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2430875_2431262_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2433955_2434759_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2436052_2436955_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2437019_2437796_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2438117_2439167_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2439290_2440961_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2440965_2441760_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2441858_2442809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2442828_2443734_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2443811_2444510_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2444669_2445614_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2445623_2447111_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2447110_2448178_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2448241_2449654_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2449839_2451060_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2451081_2452032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	2536231	2598532	4105094	transposase,tRNA	Salmonella_phage(18.18%)	54	NA	NA
WP_005012067.1|2536231_2537182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2537280_2538051_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2538047_2538719_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2538715_2539357_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2539369_2540290_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2540450_2541611_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2541652_2542603_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2543201_2543426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2543590_2545285_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2545406_2545676_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2545791_2546190_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2546200_2547157_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2547293_2547839_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2547859_2549809_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2550196_2550973_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2550978_2551371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2551792_2552743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2552739_2553837_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2553868_2554819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2556600_2557842_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557853_2558627_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2558653_2559604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2559702_2560485_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2560573_2561800_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2562525_2563911_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563929_2564535_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2564531_2566388_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2566384_2567185_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2567199_2568393_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2568460_2569435_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2569557_2570781_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570891_2573096_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2573390_2574050_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2574057_2574264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2574602_2575358_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2575628_2576144_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2576416_2576734_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2576921_2577158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2577448_2578804_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2578850_2580191_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2580292_2580925_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2580924_2583294_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2583326_2584286_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2584272_2584959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2584955_2585288_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2585403_2586354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2586350_2588417_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2588416_2588689_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2589383_2589473_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2589472_2591257_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2591280_2593446_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2593456_2594056_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2596877_2597573_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2597581_2598532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	2684649	2725318	4105094	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684649_2685600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685710_2685893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2685992_2686589_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2686772_2687864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688363_2688774_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2688832_2689162_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2689179_2691597_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691609_2692632_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692706_2693066_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693081_2693279_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693614_2694565_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2694759_2695209_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695205_2696156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696266_2697715_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2697829_2698075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698214_2699165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699409_2700123_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700245_2700473_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2700767_2701406_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701514_2702549_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702545_2703496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2703911_2704436_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704439_2704709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2704907_2705969_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706052_2707687_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707688_2708492_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708520_2709480_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709483_2710998_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711034_2712039_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712470_2712941_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2712976_2713588_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713618_2714242_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714322_2715855_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2715889_2717107_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717174_2718206_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718202_2719372_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719365_2720046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720207_2721050_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721212_2722184_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722355_2723234_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723256_2724327_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724367_2725318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	2780783	2853653	4105094	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2780783_2781200_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781310_2781943_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2781971_2782415_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782436_2783528_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783582_2784383_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784518_2785139_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785278_2785752_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2786891_2787842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2787838_2795500_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2795740_2799787_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800099_2800681_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800677_2801976_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802055_2803084_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803344_2804295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804291_2805242_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805558_2806164_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806217_2807531_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807605_2808076_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808075_2808864_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2808874_2810527_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810614_2811565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812726_2813233_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813229_2813994_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814009_2814294_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814358_2815348_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815519_2816449_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816420_2817107_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817140_2817686_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2817730_2818996_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2818992_2819895_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821076_2822021_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822115_2823633_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823674_2825303_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825410_2826292_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829404_2829779_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2829803_2830142_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830185_2831820_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2831858_2833205_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833312_2834734_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2834803_2835388_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835490_2836441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836575_2837682_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837692_2838790_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2838934_2840140_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840146_2840668_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2840664_2841147_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841152_2841404_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841384_2841870_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842005_2845467_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845484_2846369_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846378_2846810_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847056_2847560_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847637_2849038_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849112_2849988_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2849984_2850992_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851459_2851765_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2851855_2852446_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852636_2853653_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	2856796	2924655	4105094	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2856796_2857747_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2857845_2858796_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2858792_2859587_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859618_2860323_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860397_2861198_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861194_2861602_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861598_2862240_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862232_2864233_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865493_2866825_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866821_2867772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|2867870_2868821_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2870527_2870794_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2871501_2871840_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2876392_2876995_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2877091_2878381_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2878438_2879170_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2879166_2879970_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879966_2881055_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2881051_2881981_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2882129_2883275_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2883296_2884247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2884577_2888399_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2888555_2889224_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2889228_2890902_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890920_2892240_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2892244_2894560_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2894615_2896784_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2896780_2901961_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2902059_2902374_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902601_2902847_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902941_2903460_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903559_2904765_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904880_2906278_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2906394_2906973_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2907045_2908437_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908604_2909555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909835_2910456_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2910452_2910866_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910862_2911906_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911961_2912150_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2912159_2912924_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2913014_2913671_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2913762_2914521_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914546_2916148_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2916348_2917353_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2917453_2917717_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917834_2918611_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2919201_2920152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922535_2923648_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2923704_2924655_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	2955041	2998732	4105094	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2955041_2955992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2956112_2957009_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2959286_2961512_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2961676_2962765_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2962721_2963375_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2963422_2964220_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2964751_2965702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2965782_2966931_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966987_2967938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2968036_2968342_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2968370_2968805_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968806_2970051_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2970047_2970758_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2970772_2971684_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2972046_2972451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2972447_2972906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972912_2973821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973817_2974684_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2974670_2975498_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2975508_2976636_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2977713_2978952_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978993_2980256_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2980262_2981015_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2981066_2981252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2981527_2981992_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2982023_2982683_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982827_2984936_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984932_2985883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985986_2986607_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2986710_2987451_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2988585_2989710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2989755_2990124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2990365_2991316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2992351_2992894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2993279_2994230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2994226_2995135_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2995261_2996098_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2996610_2997720_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2997781_2998732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	3378694	3432435	4105094	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3378694_3379645_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3380049_3380694_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3380718_3381303_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3381403_3382021_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3382023_3383739_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3383735_3384044_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3384060_3384678_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3384722_3385025_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3385125_3385980_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3386167_3386392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3386561_3386834_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3387251_3387659_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3388028_3388823_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388923_3390159_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3390227_3391244_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3391255_3392632_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3392628_3393825_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393821_3395360_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3395356_3396616_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3398556_3399507_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3400273_3401368_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3401360_3402695_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3402648_3403332_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3403357_3404521_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3404517_3405519_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3405518_3406391_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3406387_3407137_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3407133_3407925_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407921_3409061_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3409336_3410122_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3410155_3410938_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410941_3411331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3412470_3413334_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3413369_3414458_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3414454_3415405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3415758_3418737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3419663_3420542_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3422490_3423441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3423437_3423905_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423947_3424718_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3424738_3425539_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3425549_3426959_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3427053_3427839_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3428078_3429095_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3429202_3429595_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3429732_3430413_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3430417_3431389_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3431484_3432435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	3438590	3497890	4105094	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3438590_3440354_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3440465_3441344_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3441456_3442272_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3442275_3442527_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3442611_3443628_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443958_3444180_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3446540_3447458_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447955_3449164_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3449243_3450815_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450932_3451868_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3452056_3453001_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3453568_3459286_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3459291_3460419_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3460474_3461101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3461372_3462389_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3462484_3463195_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3463191_3464181_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3464276_3465908_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465910_3466648_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466803_3467676_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3468025_3469165_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3469161_3469821_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469892_3470525_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3470554_3471073_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3471083_3472193_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3472239_3473094_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3473095_3473998_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3475220_3476171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3477927_3478917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3479092_3479881_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479877_3480909_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480927_3481491_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3481546_3483067_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3483330_3484035_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3484042_3484771_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484885_3485260_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3485302_3486592_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3486588_3487758_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3487754_3488594_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3488653_3489589_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3489601_3490552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3490650_3491613_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3491644_3492004_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3492128_3493031_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3493032_3494805_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494839_3495616_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496939_3497890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	3512828	3570901	4105094	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512828_3513779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513907_3515041_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3515084_3515990_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515992_3517693_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3517689_3518610_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3518617_3519595_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3519653_3520688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3522662_3522899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3523025_3523889_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523977_3524799_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524878_3525616_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3525612_3526605_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3526757_3527381_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3527425_3528574_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530897_3531848_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3532188_3533139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3533237_3534188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3534484_3534982_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3535024_3536800_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536807_3537674_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3537680_3538415_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3539584_3540379_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3540668_3541259_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3541292_3542621_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3542695_3543841_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543952_3544951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544913_3545348_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546864_3547749_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3547745_3548951_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548947_3549808_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549920_3551711_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3551751_3552396_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3552417_3552726_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552891_3554178_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3555611_3556562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3558513_3559728_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559833_3560823_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560819_3561428_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3561440_3562070_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3562066_3562687_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3562718_3563510_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3564361_3564817_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564835_3565762_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565815_3567102_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3568032_3568905_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568901_3569852_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569950_3570901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	3703025	3744781	4105094	transposase,tRNA	Streptococcus_phage(11.11%)	38	NA	NA
WP_010929577.1|3703025_3703976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3704075_3705026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3705022_3705658_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3705787_3706687_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3706782_3707274_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3707320_3708286_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3709419_3710661_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3710774_3711791_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3711825_3712302_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3712444_3713353_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3713466_3714579_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3714679_3715165_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3715301_3716552_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3716653_3717166_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3717264_3718215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3718280_3719219_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3719241_3719868_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3719864_3720521_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3720517_3721120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3721126_3721714_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3721894_3722464_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3722534_3723854_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3723960_3724152_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3724403_3725693_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3725847_3726843_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3726927_3727602_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3727598_3728549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3728710_3729952_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3729948_3730893_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3731011_3731962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3731921_3732851_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3732904_3733240_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3733284_3734049_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3734072_3734813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3734820_3736374_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3736408_3737386_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3737658_3738240_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_010929969.1|3743830_3744781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	3753180	3788903	4105094	integrase,transposase	Burkholderia_phage(11.11%)	34	3749767:3749784	3794407:3794424
3749767:3749784	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_005012067.1|3753180_3754131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3754141_3754783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3754949_3755192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3755290_3756241_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3756276_3756744_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3756977_3757355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3757351_3757534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3757537_3758524_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3758520_3759168_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3759225_3759753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3759789_3760974_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3760984_3761326_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3761438_3761639_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3761635_3762625_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3764111_3766082_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3766323_3766722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3766730_3767654_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3768111_3769062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3769292_3770984_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3771032_3771305_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3771301_3771673_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3771768_3771903_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3772308_3773718_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3773720_3774830_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3774924_3777378_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3777496_3778288_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3778407_3779835_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3779873_3780845_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3781263_3782427_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3782514_3783360_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3784916_3785867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3786421_3786796_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3786870_3787929_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3787952_3788903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3794407:3794424	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
>prophage 30
NZ_CP013085	Bordetella pertussis strain H706 chromosome, complete genome	4105094	4004162	4069074	4105094	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4004162_4004648_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004736_4004874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4004866_4005847_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006113_4006923_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006962_4007643_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007636_4008095_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008106_4008469_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008551_4009235_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009290_4009599_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009617_4009932_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009928_4012403_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012410_4013802_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4013798_4013984_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013962_4014664_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014660_4015482_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015462_4016587_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016579_4017599_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4017804_4018695_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018939_4019731_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4019813_4020188_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020165_4021575_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021567_4022950_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023284_4024889_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4024966_4025938_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025948_4026875_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027265_4028216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028385_4029612_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029811_4030678_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030670_4031633_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031733_4032684_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4032782_4033733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033831_4034782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4034778_4036272_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036268_4039376_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039372_4042441_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042437_4043688_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4043868_4044621_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4044662_4045307_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045315_4046296_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046395_4047139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047221_4047569_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047666_4048509_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048553_4049441_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049467_4049656_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049753_4051211_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051197_4052724_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052742_4053210_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053209_4054232_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054352_4055093_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055147_4056248_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056249_4057440_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057559_4058576_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058894_4059566_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059562_4060471_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060682_4061330_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065190_4066258_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066268_4067078_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067167_4067941_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068123_4069074_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
