The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	27282	70036	4104309	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	77634	136108	4104309	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	164893	225404	4104309	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	233336	286924	4104309	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	390857	448366	4104309	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	590420	651612	4104309	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591867_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593755_594247_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594265_595339_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595385_596489_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596564_597185_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597205_597715_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597769_598021_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598084_599218_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599225_599612_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599608_602128_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602556_602895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602891_603398_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603459_604260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604370_605312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605405_606941_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608620_610471_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610474_611308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611307_612249_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612500_613472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613613_615902_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616208_617117_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617171_618137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618211_619873_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619944_620655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620621_620786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620803_621754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622452_622836_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622893_623496_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623513_623915_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624048_624942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624938_625520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626314_627049_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627089_628139_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628286_628865_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629251_630229_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630322_634717_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634917_635766_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635924_636737_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636792_637743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637841_638642_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638703_639087_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639098_640532_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640738_641068_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641070_641820_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642002_642923_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642969_643182_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643204_643627_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643643_644744_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644840_646358_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647294_648176_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648257_649352_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649645_650596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650670_651612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	656936	703127	4104309	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656936_657962_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658002_658242_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660529_661102_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661120_662032_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662105_663074_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663196_664270_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664274_666095_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666171_667122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667210_667546_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667679_668330_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669839_670595_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673908_675651_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675643_676168_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676207_677002_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678341_679292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679543_679750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679821_680433_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680987_681239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681231_681921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681938_682160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682177_683128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683767_684253_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684239_685517_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685519_686938_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686966_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689423_690374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691846_692047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692833_693256_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693263_693764_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694018_694537_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694546_694876_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694893_695184_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698258_698792_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698788_699178_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699170_703127_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	709293	763223	4104309	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711076_711505_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712682_713657_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713673_714990_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715021_715519_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716294_717344_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717340_718135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718629_719187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720316_721267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723404_724634_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724636_726079_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726183_727329_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727360_728158_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728182_729742_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729738_732111_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732220_733324_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733323_734016_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734159_734861_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734845_735223_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735954_736905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737064_737937_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738277_738496_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738535_739915_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739956_741354_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741393_743046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743049_743934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743933_744875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744953_746573_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746739_747555_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747622_748192_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748192_749143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750928_752194_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752351_753302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754151_756596_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756715_757687_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757818_758343_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758302_759253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759474_761670_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761742_762171_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762272_763223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	854101	903365	4104309	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854101_855052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855069_855624_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855625_856060_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856056_856491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856474_857278_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857294_858110_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858106_858922_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859068_859770_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859797_861756_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861838_862789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863009_863678_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863801_864908_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864920_868034_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868030_869524_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869538_870210_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870253_870748_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870888_871536_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871639_873688_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873684_875697_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875722_877057_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877165_878158_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878224_880309_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880333_881305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881433_882465_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882468_883620_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883790_884714_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884791_885616_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885812_886829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887025_888009_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889607_890996_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891026_892016_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892126_893359_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893640_894441_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894463_896695_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897482_897929_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897950_898697_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898840_899818_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900451_901063_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901056_902274_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902414_903365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	912977	977917	4104309	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|912977_913928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913924_915757_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916155_916815_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916908_917055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917163_917331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917342_918023_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918304_919021_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919035_920337_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922481_925370_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925593_926946_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926974_927496_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927492_928947_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928981_929230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929335_930211_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930236_931292_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931304_932096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932128_933499_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934675_935626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935678_935900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936059_936272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936391_937510_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938015_938267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938379_939330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939326_939710_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939764_941579_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941728_942556_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942601_943582_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943578_943791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943787_944969_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945132_945867_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945868_948481_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948616_950530_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951145_951556_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951653_952739_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952837_953788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953784_954759_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954883_955795_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956071_956464_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956593_957544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957573_957756_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958528_959710_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959925_960603_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960599_961325_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961450_962032_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962402_965084_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965083_966217_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966209_967295_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967381_968281_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968277_969606_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969620_970292_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970479_972195_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972196_972556_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972747_973062_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973104_974325_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974321_975263_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975259_976249_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976283_976868_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976966_977917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	997317	1060483	4104309	transposase	Enterococcus_phage(16.67%)	53	NA	NA
WP_005012067.1|997317_998268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998372_999422_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999559_1000576_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002084_1002657_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002716_1003448_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003499_1004417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486063.1|1008400_1009783_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009852_1010104_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010249_1010864_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011050_1013165_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013240_1014092_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014088_1014715_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014711_1016466_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016758_1019464_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019476_1021138_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_055317897.1|1021150_1022956_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.5e-39
WP_003817151.1|1023177_1024353_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024395_1025346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025444_1026185_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026379_1028416_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028433_1029444_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029561_1030755_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030784_1031558_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031554_1032745_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032770_1033709_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033705_1036054_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036208_1036850_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036953_1038087_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038179_1038332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038363_1038912_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038930_1039416_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039593_1040532_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040534_1040852_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040897_1041842_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043522_1044173_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044226_1044562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044558_1045419_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045435_1045717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045790_1046054_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046297_1047248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047546_1048284_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048719_1049043_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049077_1049638_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049758_1050634_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050646_1051594_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051695_1051989_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052015_1054073_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054087_1054588_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054661_1056368_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057231_1058284_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058336_1058726_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058734_1059367_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059466_1060483_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	1066467	1125481	4104309	transposase,holin,tRNA,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1066467_1067895_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068832_1069849_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070181_1071117_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071166_1073047_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073113_1073458_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073602_1074739_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074735_1075809_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075966_1077403_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077493_1078135_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078470_1079487_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079819_1082567_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082633_1084055_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084318_1085035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085119_1085437_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085477_1085891_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085892_1086252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086294_1087839_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087922_1088753_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088787_1089942_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089984_1090857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090973_1093262_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094468_1094933_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094959_1095910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095927_1096065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096277_1097054_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097098_1097956_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097977_1098994_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099128_1100169_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100363_1102445_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102680_1104174_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104404_1105199_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105419_1106778_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106774_1107617_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107635_1109522_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109463_1109715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109759_1110392_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110410_1111013_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111164_1112115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112695_1113403_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113761_1114748_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114887_1115901_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115897_1116848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116865_1117006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116960_1117419_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117455_1118769_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118786_1119158_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119154_1120618_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120758_1121487_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121468_1124318_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124530_1125481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	1316919	1385406	4104309	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316919_1317870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318638_1319277_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320166_1320613_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1320694_1321396_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321396_1322164_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322160_1323399_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323398_1324325_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324427_1325543_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325558_1326509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326862_1327444_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327440_1328274_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328484_1329798_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329974_1330856_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330875_1331727_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331779_1332868_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332978_1334106_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334340_1334952_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335050_1336001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336222_1336600_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336747_1337245_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337241_1337769_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337902_1338718_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1338730_1339912_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339959_1340853_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340979_1341450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341575_1342403_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342431_1343208_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343204_1343480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343494_1343959_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343970_1344672_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1344781_1345282_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345364_1346543_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348170_1348506_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348693_1350142_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350199_1350544_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350650_1351190_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351282_1352233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1352250_1352490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352971_1353403_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1353584_1353989_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355225_1355549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355551_1356439_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356471_1356897_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356968_1357322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357561_1358068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358106_1359438_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359497_1360313_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360309_1361164_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364226_1366770_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368136_1369891_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369887_1372008_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1372012_1374208_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374204_1377546_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380348_1381299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381364_1381544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381660_1382416_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382402_1383548_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384455_1385406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	1445897	1501385	4104309	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1445897_1446848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448049_1448496_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448488_1449964_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449960_1450716_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450708_1451719_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451708_1453385_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453697_1454030_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454043_1454439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454448_1454775_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1454771_1455098_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455024_1456047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456043_1456394_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456441_1456870_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456877_1458251_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458391_1458769_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459031_1460339_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460399_1461230_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461226_1461715_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1461756_1463277_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463320_1463797_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464600_1467198_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467227_1468049_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1468775_1469525_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469708_1470587_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470684_1471401_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471415_1471976_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472142_1472907_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472926_1473784_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1473780_1474980_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475019_1476354_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476406_1478743_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478868_1479432_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479440_1480532_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480603_1481059_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481059_1481854_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481850_1483032_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483018_1483624_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483620_1484394_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484405_1485233_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485394_1487758_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487825_1488545_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488668_1489094_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1489128_1490079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490196_1491123_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491188_1492346_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492326_1492794_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492941_1493892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493908_1494343_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494332_1494683_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494879_1496034_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1496030_1497203_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497250_1498144_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498189_1498627_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498686_1499376_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1499385_1500336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500434_1501385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	1793955	1841970	4104309	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1793955_1794906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1795004_1795955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796053_1798654_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798760_1799765_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799873_1801214_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801254_1802283_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802478_1803024_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803020_1803581_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803679_1804630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804667_1805255_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805272_1805656_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1807015_1808308_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808442_1809483_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809580_1810597_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810864_1811512_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811637_1812396_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1812380_1813160_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1813177_1814062_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814058_1814838_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1814942_1815542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815830_1816583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816701_1818102_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818125_1818524_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818699_1818900_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819038_1819767_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819900_1821316_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821319_1822183_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822195_1822945_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823127_1825143_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1825124_1825793_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1826567_1827518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827666_1828005_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828062_1828224_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828255_1828456_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828721_1831295_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1831365_1833915_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836465_1836954_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837045_1838197_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838250_1839072_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839110_1840340_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840468_1840909_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1841019_1841970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2007763	2080976	4104309	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|2007763_2008714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2009165_2010167_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2010339_2011197_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2011193_2012456_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2012556_2012931_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2013003_2014191_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2014275_2015046_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2015159_2015924_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2015874_2017176_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2017172_2017979_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2019723_2020695_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2020851_2021364_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2021522_2022497_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2023497_2024292_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2024317_2025124_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2025234_2025825_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2025835_2027014_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2027116_2027491_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2027743_2029075_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2029141_2032372_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2033862_2034609_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2034693_2035155_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2035192_2036251_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2036213_2038043_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2038082_2038655_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2040079_2040901_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2041219_2042542_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2042901_2043537_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2043496_2044447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2045317_2046190_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2046267_2047407_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2047765_2049022_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2049027_2049555_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2049559_2050378_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2050377_2051100_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2051121_2051436_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2051453_2052602_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2052632_2053508_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2053504_2054824_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2054896_2056093_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2056103_2057591_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2060185_2061085_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2061222_2062188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2062286_2063237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2063458_2064409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2064405_2064708_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2064867_2065272_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2065264_2066491_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2066487_2066934_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2067003_2067786_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2067827_2069333_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2069618_2070452_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2071889_2072711_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2072729_2073584_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2073587_2074559_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2075243_2075420_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2075905_2076856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2077993_2078290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2078464_2079817_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2079959_2080976_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2094182	2139554	4104309	transposase	Bacillus_phage(25.0%)	46	NA	NA
WP_010929577.1|2094182_2095133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2095785_2096736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2096819_2098637_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2098710_2099358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2099370_2100300_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2100469_2100934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2101181_2101862_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2101910_2103602_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2103617_2104169_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2104165_2104537_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2104649_2105486_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2105496_2106021_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2106118_2106298_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2106427_2107402_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2107532_2107889_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2107878_2108754_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2108852_2109737_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2109758_2111054_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2112002_2112653_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2112740_2114261_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2114518_2116384_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2117429_2118380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2118478_2119429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162493101.1|2119446_2119587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2120401_2120761_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2120748_2122185_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2122181_2122835_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2122831_2124025_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2124128_2125403_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2125399_2126350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268682.1|2126367_2126622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2126516_2127491_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2127487_2127631_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2129252_2129915_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2129917_2130094_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2130090_2131029_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2131120_2132611_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2132696_2132849_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2132862_2133102_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2133197_2133941_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2133973_2134474_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2134536_2135496_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2135492_2136254_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2136269_2137355_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2137554_2138505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2138603_2139554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2299023	2360371	4104309	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2299023_2299974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2300090_2300810_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2300982_2301969_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2301969_2302452_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2302455_2303739_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2303735_2304674_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2304670_2306380_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2306389_2307637_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2309247_2310537_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2311674_2312433_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2313109_2313853_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2313927_2314668_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2314863_2315700_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2315750_2316521_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2316570_2317623_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2317619_2318246_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2318242_2319277_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2319455_2320472_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2320570_2321521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2324261_2325551_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2325669_2326107_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2326150_2327359_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2327505_2327970_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2327993_2328944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2329928_2330702_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2330698_2331697_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2331781_2332558_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2332713_2334318_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2334698_2335823_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2335949_2336573_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2336569_2338471_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2338519_2339314_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2339326_2340328_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2340324_2340831_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2340823_2341672_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2341769_2342312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2342355_2343306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2343461_2343788_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2343784_2344069_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2344065_2344545_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2344541_2346170_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2346166_2346511_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2346510_2349444_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2350602_2351553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2351651_2351948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2352054_2352972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2352976_2353690_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2353703_2354675_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2356394_2356775_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2356778_2357966_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2358389_2359127_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2359420_2360371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2381162	2452316	4104309	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2381162_2382113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2382665_2384291_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2384340_2385375_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2385377_2386724_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2386720_2388235_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2388225_2389236_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2389709_2390651_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2390659_2391628_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_077069155.1|2393167_2394136_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2394313_2395303_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2395349_2396108_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2396297_2397035_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2397133_2398084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2398268_2399051_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2399044_2399746_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2399985_2400588_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2401914_2402865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2402861_2404418_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2404410_2405184_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2405242_2406193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2406274_2407450_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2407463_2409521_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2409517_2410543_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2410554_2411844_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2411866_2412964_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2412960_2413851_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2413847_2415932_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2415963_2417133_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2417174_2417915_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2417914_2418685_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2419009_2419177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2419540_2420326_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2420352_2422437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2422604_2424560_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2424883_2425384_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2425482_2427009_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2427146_2428034_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2428048_2429002_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2429053_2431144_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2431159_2431546_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2434239_2435043_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2436336_2437239_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2437303_2438080_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2438401_2439451_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2439574_2441245_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2441249_2442044_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2442142_2443093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2443112_2444018_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2444095_2444794_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2444953_2445898_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2445907_2447395_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2447394_2448462_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2448525_2449938_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2450123_2451344_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2451365_2452316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2536516	2598812	4104309	transposase,tRNA	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2536516_2537467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2537565_2538336_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2538332_2539004_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2539000_2539642_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2539654_2540575_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2540735_2541896_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2541937_2542888_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2543552_2543753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2543875_2545570_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2545691_2545961_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2546076_2546475_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2546485_2547442_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2547578_2548124_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2548144_2550094_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2550481_2551258_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2551263_2551656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2552077_2553028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2553024_2554122_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2554153_2555104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2556880_2558122_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2558133_2558907_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2558933_2559884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2559982_2560765_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2560853_2562080_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2562805_2564191_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2564209_2564815_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2564811_2566668_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2566664_2567465_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2567479_2568673_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2568740_2569715_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2569837_2571061_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2571171_2573376_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2573670_2574330_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2574337_2574544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2574882_2575638_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2575653_2575815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2575908_2576424_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2576696_2577014_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2576958_2577603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2577728_2579084_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2579130_2580471_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2580572_2581205_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2581204_2583565_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2583606_2584566_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2584552_2585239_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2585235_2585568_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2585683_2586634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2586630_2588697_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2588696_2588969_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2589663_2589753_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2589752_2591537_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2591560_2593726_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2593736_2594336_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2597157_2597853_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2597861_2598812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2684929	2725598	4104309	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684929_2685880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685990_2686173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686272_2686869_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687052_2688144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688643_2689054_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2689112_2689454_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2689459_2691877_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691889_2692912_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692986_2693346_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693361_2693559_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693894_2694845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695039_2695489_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695485_2696436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696546_2697995_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2698109_2698391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698494_2699445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699689_2700403_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700525_2700753_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701047_2701686_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701794_2702829_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702825_2703776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704191_2704716_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704719_2704989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705187_2706249_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706332_2707967_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707968_2708772_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708800_2709760_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709763_2711278_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711314_2712319_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712750_2713221_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713256_2713868_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713898_2714522_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714602_2716135_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2716169_2717411_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717454_2718486_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718482_2719652_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2719645_2720326_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2720487_2721330_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721492_2722464_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722635_2723514_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723536_2724607_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724647_2725598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2781063	2853933	4104309	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781063_2781480_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781590_2782223_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782251_2782695_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782716_2783808_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2783862_2784663_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784798_2785419_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2785558_2786032_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787171_2788122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788118_2795780_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796020_2800067_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800379_2800961_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800957_2802256_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802335_2803364_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803624_2804575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804571_2805522_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805838_2806444_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2806497_2807811_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807885_2808356_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808355_2809144_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809154_2810807_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810894_2811845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2813006_2813513_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813509_2814274_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814289_2814574_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814638_2815628_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815799_2816729_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816700_2817387_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817420_2817966_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818010_2819276_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819272_2820175_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821356_2822301_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822395_2823913_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823954_2825583_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825690_2826572_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829684_2830059_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830083_2830422_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830465_2832100_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832138_2833485_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2833592_2835014_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835083_2835668_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835770_2836721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836855_2837962_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837972_2839070_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839214_2840420_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840426_2840948_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2840944_2841436_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841432_2841684_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841664_2842150_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842285_2845747_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845764_2846649_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846658_2847090_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847336_2847840_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847917_2849318_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849392_2850268_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850264_2851272_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851739_2852045_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852135_2852726_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852916_2853933_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2857076	2923887	4104309	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2857076_2858027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858125_2859076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859072_2859867_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859898_2860603_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860677_2861478_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861474_2861882_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861878_2862520_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862512_2864513_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865773_2867105_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867101_2868052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2869758_2870025_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870732_2871071_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875624_2876227_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876323_2877613_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877670_2878402_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878398_2879202_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879198_2880287_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880283_2881213_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881361_2882507_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882528_2883479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2883496_2883655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2883809_2887631_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887787_2888456_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888460_2890134_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890152_2891472_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891476_2893792_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893847_2896016_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2896012_2901202_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901291_2901606_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901833_2902079_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902173_2902692_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902791_2903997_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904112_2905510_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905626_2906205_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906277_2907669_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907836_2908787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909067_2909688_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909684_2910098_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910094_2911138_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911193_2911382_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911391_2912156_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912246_2912903_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912994_2913753_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913778_2915380_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915580_2916585_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916685_2916949_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917066_2917843_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918433_2919384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921767_2922880_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2922936_2923887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	2954273	2993462	4104309	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2954273_2955224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2955241_2955391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2955344_2956241_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958518_2960744_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960908_2961997_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961953_2962607_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962654_2963452_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963983_2964934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2965008_2966163_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966219_2967170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967268_2967574_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967602_2968037_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968038_2969283_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969279_2969990_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2970004_2970916_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971278_2971683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971679_2972138_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2972144_2973053_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2973049_2973916_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973902_2974730_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974740_2975868_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976945_2978184_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978225_2979488_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979494_2980247_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980298_2980484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980759_2981224_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981255_2981915_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982059_2984168_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984164_2985115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985218_2985839_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2985930_2986683_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987817_2988942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988987_2989356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989597_2990548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991583_2992126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992323_2992494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992511_2993462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	3378958	3432699	4104309	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3378958_3379909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3380313_3380958_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3380982_3381567_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3381667_3382285_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3382287_3384003_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3383999_3384308_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3384324_3384942_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3384986_3385289_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3385389_3386244_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3386431_3386656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3386825_3387098_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3387515_3387923_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3388292_3389087_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3389187_3390423_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3390491_3391508_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3391519_3392896_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3392892_3394089_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3394085_3395624_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3395620_3396880_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3398820_3399771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3400537_3401632_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3401624_3402959_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3402912_3403596_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3403621_3404785_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3404781_3405783_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3405782_3406655_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3406651_3407401_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3407397_3408189_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3408185_3409325_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3409600_3410386_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3410419_3411202_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3411205_3411595_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3412734_3413598_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3413633_3414722_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3414718_3415669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3416022_3419001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3419927_3420806_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3422754_3423705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3423701_3424169_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3424211_3424982_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3425002_3425803_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3425813_3427223_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3427317_3428103_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3428342_3429359_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3429466_3429859_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3429996_3430677_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3430681_3431653_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3431748_3432699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	3438854	3498154	4104309	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3438854_3440618_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3440729_3441608_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3441720_3442536_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3442539_3442791_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3442875_3443892_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3444222_3444444_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3446804_3447722_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3448219_3449428_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3449507_3451079_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3451196_3452132_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3452320_3453265_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3453832_3459550_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3459555_3460683_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3460738_3461365_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3461636_3462653_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3462748_3463459_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3463455_3464445_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3464540_3466172_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3466174_3466912_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3467067_3467940_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3468208_3469429_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3469425_3470085_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3470156_3470789_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3470818_3471337_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3471347_3472457_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3472503_3473358_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3473359_3474262_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3475484_3476435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3478191_3479181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3479177_3479336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3479356_3480145_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3480141_3481173_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3481191_3481755_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3481810_3483331_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3483594_3484299_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3484306_3485044_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3485149_3485524_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3485566_3486856_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3486852_3488022_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3488018_3488858_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3488917_3489853_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3489865_3490816_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3490914_3491877_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3491908_3492268_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3492392_3493295_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3493296_3495069_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3495103_3495880_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3497203_3498154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	3513092	3571165	4104309	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3513092_3514043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3514171_3515305_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3515348_3516254_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3516256_3517957_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3517953_3518874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3518881_3519859_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3519917_3520952_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3522926_3523163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3523289_3524153_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3524241_3525063_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3525142_3525880_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3525876_3526869_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3526982_3527645_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3527689_3528838_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3531161_3532112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3532452_3533403_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3533501_3534452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3534748_3535246_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3535288_3537064_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3537071_3537938_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3537944_3538679_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3539848_3540643_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3540932_3541523_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3541556_3542885_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3542959_3544105_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3544216_3545215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3545177_3545612_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3547128_3548013_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3548009_3549215_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3549211_3550072_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3550184_3551975_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3552015_3552681_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3552681_3552990_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3553155_3554442_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3555875_3556826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3558777_3559992_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3560097_3561087_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3561083_3561692_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3561704_3562334_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3562330_3562951_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3562982_3563774_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3564625_3565081_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3565099_3566026_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3566079_3567366_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3568296_3569169_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3569165_3570116_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3570214_3571165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013083	Bordetella pertussis strain H682 chromosome, complete genome	4104309	4026480	4079912	4104309	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4026480_4027431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027600_4028827_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029026_4029893_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029885_4030848_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030948_4031899_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031997_4032948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033046_4033997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033993_4035487_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035483_4038591_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038587_4041656_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041652_4042903_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043083_4043845_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043877_4044528_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044530_4045370_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045610_4046354_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4046436_4046784_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046881_4047724_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047768_4048656_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048682_4048871_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048968_4050426_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050412_4051939_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051957_4052425_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4052424_4053447_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4053567_4054287_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4054362_4055463_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055464_4056655_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056774_4057791_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058109_4058781_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058777_4059686_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059897_4060545_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064396_4065473_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065483_4066293_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066382_4067156_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4067156_4067321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4067338_4068289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4068177_4069200_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4069189_4070344_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4070383_4071796_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4071920_4072787_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4072788_4073613_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4073609_4074371_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4074451_4075138_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4075311_4076319_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4076315_4077095_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4077152_4078415_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078961_4079912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
