The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	27282	70036	4106392	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	77634	136108	4106392	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	164893	225404	4106392	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	233336	286924	4106392	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	390857	448366	4106392	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	590420	651612	4106392	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591867_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593755_594247_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594265_595339_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595385_596489_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596564_597185_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597205_597715_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597769_598021_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598084_599218_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599225_599612_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599608_602128_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602556_602895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602891_603398_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603459_604260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604370_605312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605405_606941_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608620_610471_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610474_611308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611307_612249_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612500_613472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613613_615902_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616208_617117_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617171_618137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618211_619873_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619944_620655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620621_620786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620803_621754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622452_622836_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622893_623496_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623513_623915_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624048_624942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624938_625520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626314_627049_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627089_628139_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628286_628865_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629251_630229_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630322_634717_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634917_635766_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635924_636737_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636792_637743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637841_638642_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638703_639087_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639098_640532_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640738_641068_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641070_641820_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642002_642923_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642969_643182_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643204_643627_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643643_644744_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644840_646358_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647294_648176_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648257_649352_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649645_650596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650670_651612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	656936	703127	4106392	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656936_657962_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658002_658242_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660529_661102_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661120_662032_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662105_663074_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663196_664270_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664274_666095_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666171_667122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667210_667546_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667679_668330_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669839_670595_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673908_675651_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675643_676168_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676207_677002_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678341_679292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679543_679750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679821_680433_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680987_681239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681231_681921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681938_682160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682177_683128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683767_684253_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684239_685517_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685519_686938_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686966_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689423_690374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691846_692047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692833_693256_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693263_693764_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694018_694537_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694546_694876_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694893_695184_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698258_698792_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698788_699178_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699170_703127_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	709293	763223	4106392	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711076_711505_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712682_713657_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713673_714990_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715021_715519_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716294_717344_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717340_718135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718629_719187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720316_721267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723404_724634_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724636_726079_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726183_727329_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727360_728158_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728182_729742_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729738_732111_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732220_733324_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733323_734016_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734159_734861_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734845_735223_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_010929591.1|735954_736905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737064_737937_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738277_738496_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738535_739915_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739956_741354_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741393_743046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743049_743934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743933_744875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744953_746573_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746739_747555_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747622_748192_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748192_749143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750928_752194_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752351_753302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754151_756596_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756715_757687_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757818_758343_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758302_759253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759474_761670_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761742_762171_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762272_763223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	859796	913927	4106392	holin,transposase	Vibrio_phage(25.0%)	41	NA	NA
WP_003813960.1|859796_861755_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861837_862788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863800_864907_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864919_868033_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868029_869523_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869537_870209_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870252_870747_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870887_871535_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871638_873687_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873683_875696_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875721_877056_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877164_878157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880332_881304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881432_882464_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882467_883619_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883789_884713_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884790_885615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	934674	1069833	4106392	tRNA,transposase	uncultured_Caudovirales_phage(10.0%)	117	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957572_957755_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959924_960602_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960598_961324_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961449_962031_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962401_965083_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965082_966216_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966208_967294_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967380_968280_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968276_969605_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969619_970291_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970478_972194_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972195_972555_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972746_973061_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973103_974324_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974320_975262_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975258_976248_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976282_976867_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977996_978908_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978968_980114_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980133_981048_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981119_981869_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981868_982798_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983041_984868_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984950_985592_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|985814_986816_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988652_989717_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990514_991423_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992910_994185_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994338_994719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994726_995599_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995904_996285_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996495_997221_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011049_1013164_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025428_1026169_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026363_1028400_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028417_1029428_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029545_1030739_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030768_1031542_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031538_1032729_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032754_1033693_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033689_1036038_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036192_1036834_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036937_1038071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038163_1038316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038347_1038896_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038914_1039400_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039577_1040516_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040518_1040836_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040881_1041826_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043506_1044157_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044210_1044546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044542_1045403_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045419_1045701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045774_1046038_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046281_1047232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047530_1048268_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048703_1049027_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049061_1049622_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049742_1050618_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050630_1051578_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051679_1051973_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051999_1054057_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054071_1054572_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054645_1056352_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057215_1058268_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058320_1058710_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058718_1059351_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059450_1060467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1061255_1062305_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062301_1063945_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063941_1064829_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064969_1065443_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065432_1066455_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068816_1069833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	1073586	1134613	4106392	tRNA,transposase,holin,protease	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074719_1075793_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079803_1082551_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082617_1084039_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087906_1088737_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094452_1094917_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094943_1095894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095911_1096049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097082_1097940_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107619_1109506_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109447_1109699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109743_1110376_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110394_1110997_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111148_1112099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112679_1113387_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115881_1116832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116849_1116990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116944_1117403_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117439_1118753_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118770_1119142_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119138_1120602_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120742_1121471_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121452_1124302_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124514_1125465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125632_1126457_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126456_1127335_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128239_1129355_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129383_1130178_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130174_1132040_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132118_1132751_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132747_1133050_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133092_1134613_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	1316903	1382332	4106392	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1316903_1317854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318622_1319261_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320150_1320597_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1320678_1321380_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321380_1322148_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322144_1323383_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323382_1324309_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324411_1325527_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325542_1326493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326846_1327428_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327424_1328258_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328468_1329782_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329958_1330840_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330859_1331711_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331763_1332852_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332962_1334090_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334324_1334936_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335034_1335985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336206_1336584_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336731_1337229_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337225_1337753_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337886_1338702_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1338714_1339896_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339943_1340837_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340963_1341434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341559_1342387_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342415_1343192_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343188_1343464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343478_1343943_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343954_1344656_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1344765_1345266_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345348_1346527_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348154_1348490_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348677_1350126_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350183_1350528_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350634_1351174_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351266_1352217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1352315_1353266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1353283_1353523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354004_1354436_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354617_1355022_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356258_1356582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356584_1357472_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357504_1357930_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358001_1358355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358594_1359101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359139_1360471_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360530_1361346_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361342_1362197_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365259_1367803_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369169_1370924_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370920_1373041_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373045_1375241_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375237_1378579_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381381_1382332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	1446930	1502418	4106392	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446930_1447881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449082_1449529_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449521_1450997_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450993_1451749_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451741_1452752_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452741_1454418_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454730_1455063_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455076_1455472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455481_1455808_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1455804_1456131_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456057_1457080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457076_1457427_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457474_1457903_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457910_1459284_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459424_1459802_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460064_1461372_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461432_1462263_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462259_1462748_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462789_1464310_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464353_1464830_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465633_1468231_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468260_1469082_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469808_1470558_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470741_1471620_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471717_1472434_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472448_1473009_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473175_1473940_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473959_1474817_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474813_1476013_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476052_1477387_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477439_1479776_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479901_1480465_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480473_1481565_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481636_1482092_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482092_1482887_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482883_1484065_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484051_1484657_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484653_1485427_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485438_1486266_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486427_1488791_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488858_1489578_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489701_1490127_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1490161_1491112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491229_1492156_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492221_1493379_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493359_1493827_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493974_1494925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494941_1495376_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495365_1495716_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495912_1497067_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1497063_1498236_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498283_1499177_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499222_1499660_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499719_1500409_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500418_1501369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501467_1502418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	1597115	1665201	4106392	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1597115_1597604_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1597721_1598300_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598405_1598774_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598872_1599823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599829_1600942_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601628_1602831_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1602866_1603013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1603034_1605695_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1605707_1609112_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609779_1612005_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612051_1612378_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612428_1613037_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613135_1614086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1614155_1614920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1614916_1615516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1615619_1616471_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1616530_1617157_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1617153_1618104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1618202_1619315_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1619304_1620306_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1620411_1621923_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1621919_1623224_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1623335_1623896_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1624163_1624718_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1625173_1625389_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1625643_1628241_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1628237_1629425_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1630083_1630698_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1630786_1631914_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1631925_1632831_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1633723_1634674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1634855_1635608_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1635676_1636336_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1636332_1637061_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1637073_1639353_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1639377_1639581_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1639622_1640255_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1640390_1641308_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1641304_1642018_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1642255_1643026_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1643030_1643630_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1643874_1645365_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1645423_1645708_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1645845_1646001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1646273_1647200_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1647336_1648077_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1648243_1649620_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1649801_1650707_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1652358_1654161_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1654287_1654929_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1655027_1655978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1655999_1657220_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1657405_1658818_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1658881_1659949_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1659948_1661436_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1661445_1662390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1662549_1663248_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1663325_1664231_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1664250_1665201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	1701150	1756741	4106392	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1701150_1702101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1702159_1702933_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1702925_1704482_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1704478_1705429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1706755_1707358_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1707597_1708299_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1708292_1709075_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1709259_1710210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1710308_1711046_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1711235_1711994_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1712040_1713030_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1713207_1714176_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1715715_1716684_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1716692_1717634_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1718107_1719118_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1719108_1720623_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1720619_1721966_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1721968_1723003_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1723052_1724678_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1725230_1726181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1726285_1727233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1727286_1729101_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1729093_1729768_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1729897_1732972_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1732985_1733285_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1733599_1734223_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1734466_1735336_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1735313_1736258_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1736343_1737270_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1737382_1738162_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1738152_1739349_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1739379_1740330_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1740551_1741241_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1741305_1742061_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1742112_1743105_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1743114_1744068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1744183_1745146_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1746547_1746976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1746972_1747923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1748216_1748954_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1749377_1750565_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1750568_1750949_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1752668_1753640_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1753653_1754367_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1754371_1755289_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1755395_1755692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1755790_1756741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	1989505	2059157	4106392	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1989505_1992163_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1992240_1993443_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1993439_1993952_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1994074_1994512_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1994788_1995739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1995837_1996788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1997041_1998847_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1998960_1999128_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1999191_1999428_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1999796_2000996_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2002511_2003462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2003913_2004915_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2005087_2005945_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2005941_2007204_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2007304_2007679_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2007751_2008939_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2009023_2009794_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2009907_2010672_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2010622_2011924_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2011920_2012727_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2014471_2015443_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2015599_2016112_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2016270_2017245_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2018245_2019040_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2019065_2019872_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2019982_2020573_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2020583_2021762_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2021864_2022239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2022491_2023823_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2023889_2027120_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2028610_2029357_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2029441_2029903_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2029940_2030999_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2030961_2032791_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2032830_2033403_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2034827_2035649_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2035967_2037290_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2037649_2038285_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2038244_2039195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2040065_2040938_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2041015_2042155_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2042513_2043770_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2043775_2044303_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2044307_2045126_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2045125_2045848_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2045869_2046184_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2046201_2047350_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2047380_2048256_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2048252_2049572_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2049644_2050841_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2050851_2052339_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2054933_2055833_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2055970_2056936_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2057034_2057985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2058206_2059157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	2070653	2121737	4106392	transposase	Erysipelothrix_phage(16.67%)	47	NA	NA
WP_005013747.1|2070653_2071604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2072747_2073044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2073218_2074571_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2074713_2075730_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2077709_2078723_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2078809_2079715_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2079871_2080216_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2080373_2080832_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2080845_2083062_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2083058_2084120_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2084148_2085123_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2085074_2085893_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2085905_2086514_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2086688_2087084_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2087102_2088542_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2088570_2088918_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2088936_2089887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2090539_2091490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2091573_2093391_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2093464_2094112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2094124_2095054_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2095223_2095688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2095935_2096616_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2096664_2098356_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2098371_2098923_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2098919_2099291_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2099403_2100240_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2100250_2100775_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2100872_2101052_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2101181_2102156_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2102286_2102643_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2102632_2103508_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2103606_2104491_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2104512_2105808_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2106756_2107407_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2107494_2109015_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2109272_2111138_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2112183_2113134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2113151_2113292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2114106_2114466_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2114453_2115890_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2115886_2116540_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2116536_2117730_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2117833_2119108_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2119104_2120055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268682.1|2120072_2120327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2120786_2121737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	2132308	2172999	4106392	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2132308_2133259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2133357_2134308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2134267_2134681_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2134965_2135265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2135674_2137957_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2138422_2138617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2138642_2140673_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2140692_2140905_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2141182_2141722_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2141835_2143131_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2143207_2144365_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2144548_2145448_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2145466_2146771_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2146736_2147843_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2147930_2148167_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2148305_2149376_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2149379_2150735_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2150761_2151922_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2151924_2152563_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2152564_2153851_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2153909_2155205_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2155211_2155718_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2155714_2156863_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2156890_2157316_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2157638_2160521_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2160613_2161369_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2162134_2163484_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2163582_2164533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2164631_2165582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2165655_2166129_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2166154_2167363_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2167359_2168133_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2168132_2168756_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2168921_2169182_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2169485_2170067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2170133_2170388_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2170374_2172999_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	2200782	2266331	4106392	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2200782_2201733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2201933_2202743_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2202867_2203818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2203814_2204708_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2204832_2205027_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2205026_2205368_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2205377_2207240_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2207369_2207882_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2207884_2208208_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2208209_2208620_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2208657_2209869_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2209886_2210399_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2210614_2211106_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2211358_2213395_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2213472_2214675_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2214803_2215454_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2217011_2217962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2218532_2218745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2218762_2219494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2219528_2220170_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2220162_2220831_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2223043_2223820_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2223841_2224999_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2224995_2225427_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2225423_2226227_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2226240_2226642_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2226708_2227680_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2227745_2228969_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2229196_2230147_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2230270_2232724_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2232912_2234217_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2234321_2234975_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2234977_2236288_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2236484_2237045_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2237156_2237357_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2237702_2238269_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2238352_2238556_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2238862_2239183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2239224_2239506_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2239580_2240837_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2241219_2241549_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2243119_2243941_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2243940_2245080_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2245086_2245983_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2245979_2247905_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2248264_2250877_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2250929_2253230_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2253226_2254435_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2254696_2255071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2255067_2256018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2256116_2258111_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2258170_2259136_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2259125_2261987_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2261989_2262496_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2262600_2263809_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2263810_2264749_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2264910_2265384_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2265380_2266331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	2352508	2416086	4106392	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2352508_2353459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2353760_2354237_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2354860_2356498_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2356528_2357842_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2357975_2358293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2358393_2359716_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2359712_2360663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2360761_2361712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2362241_2363264_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2363292_2364123_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2364139_2365837_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2365901_2366978_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2367137_2368001_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2368031_2368601_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2368617_2369469_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2370526_2371408_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2371482_2372472_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2372534_2373485_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2373547_2374405_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2374464_2374953_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2376525_2377716_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2377712_2379299_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2379317_2380385_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2380489_2382034_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2382453_2384028_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2384135_2385152_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2385148_2385988_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2385992_2387630_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2387626_2388577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2388594_2388738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2388719_2389994_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2390023_2390314_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2390386_2391400_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2391419_2392682_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2392684_2393608_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2393604_2395098_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2395108_2396041_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2396222_2397548_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2397582_2398926_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2398998_2400519_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2400673_2401405_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2401472_2402813_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2402828_2403740_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2403730_2404324_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2404385_2404772_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2404783_2405254_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2405265_2405889_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2405909_2408657_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2415135_2416086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	2687023	2727691	4106392	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
WP_010929591.1|2687023_2687974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688084_2688267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688366_2688963_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689146_2690238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2690737_2691148_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2691206_2691548_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2691553_2693971_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693983_2695006_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695080_2695440_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695455_2695653_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695988_2696939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697133_2697583_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2697579_2698530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2698640_2700089_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2700203_2700485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2700588_2701539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701783_2702497_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702619_2702847_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703141_2703780_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703888_2704923_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704919_2705870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2706285_2706810_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2706813_2707083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2707281_2708343_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2708426_2710061_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2710062_2710866_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2710894_2711854_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2711857_2713372_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2713408_2714413_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_033456131.1|2714420_2714654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2714843_2715314_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2715349_2715961_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2715991_2716615_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2716695_2718228_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2718262_2719504_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2719547_2720579_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2720575_2721745_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2721738_2722419_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2722580_2723423_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2723585_2724557_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2724728_2725607_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2725629_2726700_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2726740_2727691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	2783156	2856026	4106392	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2783156_2783573_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783683_2784316_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784344_2784788_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784809_2785901_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785955_2786756_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786891_2787512_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2787651_2788125_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789264_2790215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790211_2797873_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798113_2802160_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802472_2803054_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803050_2804349_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804428_2805457_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2805717_2806668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806664_2807615_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807931_2808537_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808590_2809904_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809978_2810449_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810448_2811237_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811247_2812900_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812987_2813938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815099_2815606_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815602_2816367_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816382_2816667_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816731_2817721_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817892_2818822_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818793_2819480_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819513_2820059_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820103_2821369_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821365_2822268_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823449_2824394_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824488_2826006_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826047_2827676_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827783_2828665_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831777_2832152_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832176_2832515_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832558_2834193_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834231_2835578_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835685_2837107_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837176_2837761_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837863_2838814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838948_2840055_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840065_2841163_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841307_2842513_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842519_2843041_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843037_2843529_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843525_2843777_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843757_2844243_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844378_2847840_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847857_2848742_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848751_2849183_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849429_2849933_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850010_2851411_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851485_2852361_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852357_2853365_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853832_2854138_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854228_2854819_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855009_2856026_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	2859169	2925980	4106392	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_010929956.1|2859169_2860120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860218_2861169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861165_2861960_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861991_2862696_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862770_2863571_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863567_2863975_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863971_2864613_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864605_2866606_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867866_2869198_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869194_2870145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871851_2872118_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872825_2873164_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877717_2878320_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878416_2879706_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879763_2880495_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880491_2881295_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881291_2882380_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882376_2883306_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883454_2884600_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884621_2885572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885589_2885748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885902_2889724_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889880_2890549_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890553_2892227_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892245_2893565_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893569_2895885_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895940_2898109_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898105_2903295_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903384_2903699_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903926_2904172_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904266_2904785_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904884_2906090_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906205_2907603_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907719_2908298_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908370_2909762_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909929_2910880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911160_2911781_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911777_2912191_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912187_2913231_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913286_2913475_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913484_2914249_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914339_2914996_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915087_2915846_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915871_2917473_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917673_2918678_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918778_2919042_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919159_2919936_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920526_2921477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923860_2924973_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925029_2925980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	2956366	2995555	4106392	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2956366_2957317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957334_2957484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957437_2958334_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960611_2962837_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2963001_2964090_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964046_2964700_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964747_2965545_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966076_2967027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967101_2968256_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968312_2969263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969361_2969667_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969695_2970130_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970131_2971376_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971372_2972083_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972097_2973009_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973371_2973776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973772_2974231_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974237_2975146_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975142_2976009_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975995_2976823_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976833_2977961_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979038_2980277_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980318_2981581_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981587_2982340_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982391_2982577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982852_2983317_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983348_2984008_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984152_2986261_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|2986257_2987208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987311_2987932_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988023_2988776_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989910_2991035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991080_2991449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991690_2992641_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993676_2994219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994416_2994587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994604_2995555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	3122640	3186475	4106392	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	57	NA	NA
WP_005015810.1|3122640_3123591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3123736_3124861_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3125066_3125630_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3126624_3127107_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3127264_3128512_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3128732_3129389_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3129424_3130654_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_158516320.1|3130748_3130904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3130921_3131872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3131963_3133379_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3133384_3134521_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3134590_3134962_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3135049_3135796_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3135832_3136897_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3137085_3137478_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3137487_3137916_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3138211_3139309_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3139650_3141015_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3141073_3141625_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3141638_3142313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3143569_3144379_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3144381_3145218_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3145232_3145925_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3145936_3146326_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3146431_3147820_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3147936_3149433_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3149729_3150404_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3150502_3151453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3151449_3153909_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3154005_3155451_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3155454_3156642_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3156710_3157220_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3157421_3157874_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_192855352.1|3157846_3158413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247415.1|3158435_3161498_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3161803_3164731_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3164752_3165949_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3166266_3166794_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|3166932_3167508_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3167515_3168979_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3168989_3170117_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|3170246_3171374_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3171399_3171639_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3171919_3172423_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3172595_3173537_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3173548_3174646_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3175611_3176958_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3176967_3177417_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3177506_3177941_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3178019_3178568_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3178650_3180021_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3180031_3180625_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3180696_3182580_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3182617_3183517_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3183513_3184377_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_010929853.1|3184475_3185426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3185524_3186475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	3234619	3249856	4106392	transposase,protease	Erwinia_phage(100.0%)	16	NA	NA
WP_005012808.1|3234619_3235570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3236014_3236326_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3236325_3236856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3236812_3237001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3237018_3237969_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3238067_3239018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3239307_3239772_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3239786_3241292_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3241548_3243153_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3243208_3244114_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3244554_3245505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3245603_3246554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3246635_3247217_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3247641_3247947_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3247960_3249295_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3249316_3249856_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 27
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	3268279	3330344	4106392	holin,transposase,integrase,tRNA	Tupanvirus(12.5%)	47	3261673:3261691	3334431:3334449
3261673:3261691	attL	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
WP_010931277.1|3268279_3268615_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3268614_3269457_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3269555_3270506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3270570_3271542_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3271605_3272625_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3272626_3274000_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3274277_3274958_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3274970_3277097_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3277093_3278188_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3278202_3279462_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3279481_3281206_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3281444_3282197_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3282335_3283286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3283598_3285077_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3285083_3286193_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3286204_3286885_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3286906_3287662_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3287797_3288682_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3288769_3289351_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3289611_3289911_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3290062_3290542_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3291261_3292698_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3292694_3293198_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3293213_3294164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3294691_3295465_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3295597_3296608_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3296759_3298415_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3298469_3298811_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3298824_3300264_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3300396_3301212_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3301175_3301388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3301405_3302356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3303743_3304691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3304917_3305658_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3305743_3306694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3306711_3306867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3308135_3309707_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3310039_3311893_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3311937_3314502_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3314920_3315871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3318736_3319231_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3319247_3320198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931301.1|3320381_3321593_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3321608_3324560_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931303.1|3324561_3327681_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3327828_3328875_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3329216_3330344_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
3334431:3334449	attR	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
>prophage 28
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	3382101	3435842	4106392	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382101_3383052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383456_3384101_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384125_3384710_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384810_3385428_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385430_3387146_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387142_3387451_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387467_3388085_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388129_3388432_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388532_3389387_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389574_3389799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389968_3390241_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390658_3391066_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391435_3392230_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392330_3393566_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393634_3394651_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394662_3396039_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396035_3397232_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397228_3398767_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398763_3400023_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401963_3402914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403680_3404775_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404767_3406102_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406055_3406739_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3406764_3407928_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407924_3408926_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408925_3409798_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409794_3410544_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410540_3411332_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411328_3412468_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412743_3413529_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413562_3414345_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414348_3414738_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415877_3416741_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416776_3417865_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417861_3418812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419165_3422144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423070_3423949_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425897_3426848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426844_3427312_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427354_3428125_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428145_3428946_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428956_3430366_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430460_3431246_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431485_3432502_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432609_3433002_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433139_3433820_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433824_3434796_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434891_3435842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	3441997	3501297	4106392	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3441997_3443761_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443872_3444751_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444863_3445679_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445682_3445934_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446018_3447035_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447365_3447587_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449947_3450865_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451362_3452571_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452650_3454222_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454339_3455275_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455463_3456408_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456975_3462693_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462698_3463826_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463881_3464508_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3464779_3465796_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465891_3466602_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466598_3467588_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467683_3469315_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469317_3470055_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470210_3471083_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471351_3472572_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472568_3473228_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473299_3473932_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473961_3474480_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474490_3475600_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475646_3476501_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476502_3477405_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478627_3479578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481334_3482324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482320_3482479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482499_3483288_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483284_3484316_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484334_3484898_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484953_3486474_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486737_3487442_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487449_3488187_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488292_3488667_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488709_3489999_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489995_3491165_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491161_3492001_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492060_3492996_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493008_3493959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494057_3495020_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495051_3495411_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495535_3496438_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496439_3498212_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498246_3499023_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500346_3501297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	3516235	3574308	4106392	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516235_3517186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517314_3518448_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518491_3519397_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519399_3521100_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521096_3522017_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522024_3523002_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523060_3524095_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526069_3526306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3526432_3527296_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527384_3528206_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528285_3529023_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3529019_3530012_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530125_3530788_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530832_3531981_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534304_3535255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535595_3536546_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536644_3537595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537891_3538389_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538431_3540207_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540214_3541081_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541087_3541822_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542991_3543786_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544075_3544666_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544699_3546028_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546102_3547248_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547359_3548358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548320_3548755_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550271_3551156_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551152_3552358_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552354_3553215_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553327_3555118_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555158_3555824_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555824_3556133_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556298_3557585_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3559018_3559969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561920_3563135_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563240_3564230_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564226_3564835_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564847_3565477_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565473_3566094_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566125_3566917_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567768_3568224_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568242_3569169_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569222_3570509_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571439_3572312_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572308_3573259_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573357_3574308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	3706432	3838298	4106392	tRNA,transposase,integrase	uncultured_Mediterranean_phage(10.34%)	113	3752125:3752142	3794655:3794672
WP_010929577.1|3706432_3707383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3707482_3708433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3708429_3709065_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3709194_3710094_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3710189_3710681_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3710727_3711693_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3712826_3714068_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3714181_3715198_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3715232_3715709_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3715851_3716760_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3716873_3717986_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3718086_3718572_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3718708_3719959_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3720060_3720573_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3720671_3721622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3721687_3722626_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3722648_3723275_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3723271_3723928_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3723924_3724527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3724533_3725121_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3725301_3725871_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3725941_3727261_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3727367_3727559_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3727810_3729100_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3729254_3730250_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3730334_3731009_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3731005_3731956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3732117_3733359_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3733355_3734300_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3734418_3735369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3735328_3736258_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3736311_3736647_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3736691_3737456_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3737479_3738220_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3738227_3739781_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3739815_3740793_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3741065_3741647_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3741698_3748601_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3749047_3749179_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3749444_3749651_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3750655_3751315_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3751342_3752488_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3752125:3752142	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3752628_3752964_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3753038_3753899_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3754162_3754864_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3755033_3755429_+	RidA family protein	NA	NA	NA	NA	NA
WP_005013747.1|3755538_3756489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3756524_3756992_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3757225_3757603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3757599_3757782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3757785_3758772_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3758768_3759416_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3759473_3760001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3760037_3761222_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3761232_3761574_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3761686_3761887_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3761883_3762873_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3764359_3766330_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3766571_3766970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3766978_3767902_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3768359_3769310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3769540_3771232_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3771280_3771553_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3771549_3771921_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3772016_3772151_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3772556_3773966_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3773968_3775078_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3775172_3777626_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3777744_3778536_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3778655_3780083_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3780121_3781093_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3781511_3782675_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3782762_3783608_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3785164_3786115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3786669_3787044_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3787118_3788177_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3788200_3789151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3792032_3793202_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3793302_3794910_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3794655:3794672	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3794956_3796978_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3797006_3797252_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3797265_3798456_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3798651_3799617_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3799639_3800779_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3800990_3801953_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3802076_3804101_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3804297_3806541_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3806819_3807278_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3808205_3810827_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3810890_3813518_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3813669_3814734_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3814733_3815504_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3815512_3816346_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3816358_3817138_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3817211_3818645_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3818672_3819431_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3819486_3821337_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3821430_3821907_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3821923_3822844_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3822950_3823451_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3823824_3824517_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_162268689.1|3824631_3824808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3824825_3825776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3825772_3829546_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3829882_3831772_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3831783_3832677_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3832780_3833578_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3833574_3834426_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3834487_3835168_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3835195_3835531_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3835531_3836491_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3836511_3837000_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3837281_3838298_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013082	Bordetella pertussis strain H382 chromosome, complete genome	4106392	4027514	4070372	4106392	transposase	Planktothrix_phage(50.0%)	36	NA	NA
WP_010931661.1|4027514_4028465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028634_4029861_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030060_4030927_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030919_4031882_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031982_4032933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033031_4033982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034080_4035031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035129_4036080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036076_4037570_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037566_4040674_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040670_4043739_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043735_4044986_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045166_4045928_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045960_4046611_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046613_4047453_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047693_4048437_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048519_4048867_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048964_4049807_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049851_4050739_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050765_4050954_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051051_4052509_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052495_4054022_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054040_4054508_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054507_4055530_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055650_4056370_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056445_4057546_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057547_4058738_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058857_4059874_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060192_4060864_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060860_4061769_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061980_4062628_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066479_4067556_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067566_4068376_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068465_4069239_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069239_4069404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069421_4070372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
