The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	27282	70036	4103209	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	77634	136108	4103209	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	164893	225404	4103209	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	233336	286924	4103209	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	468501	585347	4103209	tRNA,transposase	Acinetobacter_phage(22.22%)	100	NA	NA
WP_010929956.1|468501_469452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470174_471449_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471535_472618_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472628_473441_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473477_473804_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473808_474369_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474609_475602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475620_476616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476631_478008_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|478000_480382_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480398_480788_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480914_481145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481249_482200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482298_483249_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483245_484118_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485048_486335_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486388_487315_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487333_487789_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|488640_489432_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489463_490084_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490080_490710_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490722_491331_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491327_492317_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492422_493637_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495588_496539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|497972_499259_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|499424_499733_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|499754_500399_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|500439_502230_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|502342_503203_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|503199_504405_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|504401_505286_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|506802_507237_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|507199_508198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|508309_509455_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|509529_510858_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|510891_511482_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|511771_512566_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|513735_514470_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|514476_515343_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|515350_517126_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|517168_517666_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|517962_518913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|519011_519962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|520302_521253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|523576_524725_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|524769_525393_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|525545_526538_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|526534_527272_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|527351_528173_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|528261_529125_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|529251_529488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|531462_532497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|532555_533533_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|533540_534461_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|534457_536158_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|536160_537066_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|537109_538243_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|538371_539322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|539420_541490_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|541532_543635_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|543941_545018_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|545093_545978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|546160_546583_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|546592_547993_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|548035_548941_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|549039_550581_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|550615_551155_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|551167_551638_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|551775_552018_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|552134_553016_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|553088_553409_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|554260_555211_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|556534_557311_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|557345_559118_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|559119_560022_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|560146_560506_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|560537_561500_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|561598_562549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|562561_563497_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|563556_564396_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|564392_565562_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|565558_566848_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|566890_567265_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|567379_568108_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|568115_568820_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|569083_570604_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|570659_571223_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|571241_572273_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|572269_573058_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|573233_574223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|575979_576930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|578152_579055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|579056_579911_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|579957_581067_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|581077_581596_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|581625_582258_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|582329_582989_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|582985_584125_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|584474_585347_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	589761	654643	4103209	tRNA,transposase	Pandoravirus(12.5%)	48	NA	NA
WP_010931363.1|589761_590778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|591049_591676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|591731_592859_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|592864_598582_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|599149_600094_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|600282_601218_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|601335_602907_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|602986_604195_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|604692_605610_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|607970_608192_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|608522_609539_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|609623_609875_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|609878_610694_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|610806_611685_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|611796_613560_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|613675_615016_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|616085_617510_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|617509_618211_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|619715_620666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|620761_621733_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|621737_622418_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|622555_622948_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|623055_624072_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|624311_625097_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|625191_626601_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|626611_627412_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|627432_628203_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|628245_628713_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|628709_629660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|630742_631693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	673554	750863	4103209	tRNA,protease,transposase,integrase	Bacillus_phage(20.0%)	58	720691:720709	740579:740597
WP_023995489.1|673554_674505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674603_676079_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677666_678554_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678556_679498_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679543_681109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682886_684212_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684394_685852_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685815_686313_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686343_687315_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|687367_687799_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687928_688597_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689325_690429_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|690534_691809_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691820_692846_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692847_694218_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|694218_695355_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695401_697327_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697323_698445_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698441_699596_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699592_700723_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700730_702296_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702302_703685_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703963_704575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704666_706082_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706099_706810_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706806_708129_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708208_710170_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710295_711609_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711717_713016_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713198_714107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714116_714326_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714337_716017_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716118_717072_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717162_717990_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717988_719875_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719871_720471_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720519_721419_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721627_722578_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722700_723315_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729288_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736221_736422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	995745	1098138	4103209	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|995745_996861_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|996961_997780_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|997877_998489_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|998648_1000025_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1000087_1000546_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1000630_1001326_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1001387_1001669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1002231_1002984_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1003028_1004105_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1004101_1005052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1005154_1005817_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1005911_1006082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1006434_1007436_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1007438_1008635_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1008655_1009459_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1009539_1009836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1009866_1010430_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1010470_1011328_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1011335_1012085_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1012106_1012979_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1013007_1013787_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1013820_1014618_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1017272_1017665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1017658_1018519_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1018522_1019485_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1020261_1020951_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1021811_1022762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1023111_1023981_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1024051_1024747_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1024736_1025246_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1025242_1026463_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1026410_1027313_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1028199_1029486_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1029524_1030898_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1030936_1031638_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1031936_1032926_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1033026_1033488_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1033503_1034052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1034193_1035669_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1035774_1036866_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1036869_1037652_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1037661_1038450_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1039575_1040010_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1040006_1041017_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1041060_1041987_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1042273_1042642_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1042858_1043809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1043853_1046280_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1046328_1047021_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1047093_1048293_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1048310_1049216_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1049331_1050261_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1050286_1051633_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1051645_1052410_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1052423_1053206_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1053398_1054349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1054410_1055520_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1056032_1056869_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1056995_1057904_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1057900_1058851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1059236_1059779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1060814_1061765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1062006_1062375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1062420_1063545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1064679_1065420_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1065523_1066144_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1066247_1067198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1067194_1069303_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1069447_1070107_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1070138_1070603_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1070878_1071064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1071115_1071868_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1071874_1073137_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1073178_1074417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1075494_1076622_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1076632_1077460_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1077446_1078313_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1079679_1080084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1080175_1081126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1081495_1082407_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1082421_1083132_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1083128_1084373_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1084374_1084809_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1084837_1085143_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1085241_1086192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1086248_1087397_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1087477_1088428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1088959_1089757_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1089804_1090458_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1090414_1091503_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1091667_1093893_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1096170_1097067_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1097187_1098138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	1128524	1199495	4103209	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1128524_1129475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1129531_1130644_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1133027_1133978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1134568_1135345_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1135462_1135726_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1135826_1136831_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1137031_1138633_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1138658_1139417_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1139508_1140165_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1140255_1141020_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1141029_1141218_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1141273_1142317_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1142313_1142727_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1142723_1143344_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1143624_1144575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1144742_1146134_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1146206_1146785_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1146901_1148299_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1148414_1149620_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1149719_1150238_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1150332_1150578_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1150805_1151120_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1151218_1156399_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1156395_1158564_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1158619_1160935_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1160939_1162259_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1162277_1163951_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1163955_1164624_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1164780_1168602_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1168932_1169883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1169904_1171050_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1171198_1172128_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1172124_1173213_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1173209_1174013_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1174009_1174741_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1174798_1176088_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1176184_1176787_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1181340_1181679_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1182386_1182653_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1184359_1185310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1185306_1186638_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1187898_1189899_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1189891_1190533_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1190529_1190937_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1190933_1191734_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1191808_1192513_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1192544_1193339_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1193335_1194286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077108063.1|1194384_1195335_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1195433_1195868_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1195950_1198287_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1198478_1199495_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	1246889	1327764	4103209	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1246889_1247840_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1247836_1248787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1249047_1250076_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1250155_1251454_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1251450_1252032_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1252344_1256391_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1256631_1264293_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1264289_1265240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1266379_1266853_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1266992_1267613_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1267748_1268549_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1268603_1269695_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1269716_1270160_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1270188_1270821_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1270931_1271348_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1271340_1272033_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1272139_1272514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1272590_1273400_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1273495_1274440_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1274478_1275450_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1275540_1275978_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1276036_1276918_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1277921_1278782_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1278814_1280197_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1280193_1281213_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1281585_1282080_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1282087_1282828_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1282908_1284513_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1284552_1285341_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1285466_1287632_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1288512_1289325_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1289337_1289646_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1289763_1291494_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1291495_1292698_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1292770_1293439_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1293560_1294028_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1294163_1295546_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1295542_1296667_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1296663_1299300_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1299715_1300666_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1304412_1305024_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1305246_1306707_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1306803_1308396_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1308749_1309007_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1309008_1310349_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1310444_1311134_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1311146_1312577_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1314301_1315123_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1315133_1316705_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1316733_1317711_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1317737_1318541_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1318537_1319332_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1319339_1320575_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1320588_1321002_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1321751_1322702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1323323_1325051_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1325162_1326521_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1326813_1327764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	1447159	1499312	4103209	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1447159_1448110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1448276_1448630_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1448642_1449005_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1449046_1449472_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1449674_1450931_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1451129_1452110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1452259_1453501_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_010929956.1|1453599_1454550_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1454558_1455254_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1458075_1458675_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1458685_1460851_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1460874_1462659_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1462658_1462748_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1463442_1463715_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1463714_1465781_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1465777_1466728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1466826_1467777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1467892_1468225_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1468221_1468908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1468894_1469854_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1469886_1472256_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1472255_1472888_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1472989_1474330_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1474376_1475732_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1476022_1476259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1476446_1476764_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1477036_1477552_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1477822_1478578_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1478916_1479123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1479130_1479790_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1480084_1482289_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1482399_1483623_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1483745_1484720_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1484787_1485981_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1485995_1486796_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1486792_1488649_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1488645_1489251_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1489269_1490655_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1491380_1492607_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1492695_1493478_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1493576_1494527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1494553_1495327_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1495338_1496580_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1498361_1499312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	1543237	1611323	4103209	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1543237_1543726_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1543843_1544422_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1544527_1544896_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1544994_1545945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1545951_1547064_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1547750_1548953_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1549156_1551817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1551829_1555234_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1555901_1558127_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1558173_1558500_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1558550_1559159_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1559257_1560208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1560277_1561042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1561038_1561575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1561741_1562593_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1562652_1563279_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1563275_1564226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1564324_1565437_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1565426_1566428_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1566533_1568045_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1568041_1569346_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1569457_1570018_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1570285_1570840_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1571295_1571511_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1571765_1574363_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1574359_1575547_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1576205_1576820_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1576908_1578030_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1578047_1578953_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1579845_1580796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1580977_1581730_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1581798_1582458_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1582454_1583183_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1583195_1585475_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1585499_1585703_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1585744_1586377_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1586512_1587430_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1587426_1588140_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1588377_1589148_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1589152_1589752_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1589996_1591487_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1591545_1591830_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1592395_1593322_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1593458_1594199_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1594365_1595742_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1595923_1596829_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1598480_1600283_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1600400_1601051_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1601149_1602100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1602121_1603342_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1603527_1604940_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1605003_1606071_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1606070_1607558_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1607567_1608512_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1608671_1609370_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1609447_1610353_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1610372_1611323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	1647272	1702863	4103209	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1647272_1648223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1648281_1649055_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1649047_1650604_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1650600_1651551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1652877_1653480_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1653719_1654421_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1654414_1655197_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1655381_1656332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1656430_1657168_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1657357_1658116_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1658162_1659152_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1659329_1660298_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1661837_1662806_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1662814_1663756_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1664229_1665240_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1665230_1666745_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1666741_1668088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1668090_1669125_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1669174_1670800_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1671352_1672303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1672407_1673355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1673408_1675223_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1675215_1675890_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1676019_1679094_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1679107_1679407_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1679721_1680345_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1680588_1681458_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1681435_1682380_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1682465_1683392_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1683504_1684284_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1684274_1685471_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1685501_1686452_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1686673_1687363_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1687427_1688183_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1688234_1689227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1689236_1690190_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1690305_1691268_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1692669_1693098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1693094_1694045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1694338_1695061_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1695499_1696687_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1696690_1697041_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1698790_1699762_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1699775_1700489_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1700493_1701411_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1701517_1701814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1701912_1702863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	1935627	2005279	4103209	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1935627_1938285_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1938362_1939565_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1939561_1940074_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1940196_1940634_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1940910_1941861_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1941959_1942910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1943073_1944969_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1945082_1945250_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1945313_1945550_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1945918_1947070_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1948633_1949584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1950035_1951037_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1951209_1952067_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1952063_1953326_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1953426_1953801_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1953873_1955061_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1955145_1955916_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1956029_1956794_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1956744_1958046_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1958042_1958849_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1960593_1961565_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1961721_1962234_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1962392_1963367_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1964367_1965162_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1965187_1965994_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1966104_1966695_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1966705_1967884_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1967986_1968361_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1968613_1969945_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1970011_1973242_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1974732_1975479_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1975563_1976025_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1976062_1977121_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1977083_1978913_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1978952_1979525_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1980949_1981771_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1982089_1983412_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1983771_1984407_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1984366_1985317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1986187_1987060_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1987137_1988277_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1988635_1989892_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1989897_1990425_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1990429_1991248_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1991247_1991970_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1991991_1992306_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1992323_1993472_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1993502_1994378_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1994374_1995694_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1995766_1996963_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1996973_1998461_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2001055_2001955_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2002092_2003058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2003156_2004107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2004328_2005279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	2016775	2066171	4103209	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2016775_2017726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2018863_2019160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2019334_2020687_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2020829_2021846_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2023825_2024839_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2024925_2025831_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2025987_2026332_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2026489_2026948_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2026961_2029178_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2029174_2030236_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2030264_2031239_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2031190_2032009_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2032021_2032630_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2032804_2033200_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2033218_2034658_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2034686_2035034_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2035052_2036003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2036655_2037606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2037689_2039507_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2039580_2040228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2040240_2041170_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2041339_2041804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2042051_2042732_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2042780_2044472_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2044487_2045039_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2045035_2045407_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2045519_2046356_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2046366_2046891_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2046988_2047168_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2047297_2048272_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2048402_2048759_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2048748_2049624_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2049722_2050607_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2050628_2051924_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2052872_2053523_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2053610_2055131_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2055388_2057254_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2058299_2059250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2059267_2059408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2060222_2060582_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2060569_2062006_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2062002_2062656_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2062652_2063846_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2063949_2065224_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2065220_2066171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	2077375	2118066	4103209	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2077375_2078326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2078424_2079375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2079334_2079748_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2080032_2080332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2080741_2083024_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2083489_2083684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2083709_2085740_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2085759_2085972_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2086249_2086789_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2086902_2088198_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2088274_2089432_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2089615_2090515_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2090533_2091838_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2091803_2092910_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2092997_2093234_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2093372_2094443_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2094446_2095802_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2095828_2096986_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2096991_2097630_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2097631_2098927_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2098976_2100263_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2100278_2100785_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2100781_2101930_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2101957_2102383_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2102705_2105588_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2105680_2106436_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2107201_2108551_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2108649_2109600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2109698_2110649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2110722_2111196_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2111221_2112430_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2112426_2113200_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2113199_2113823_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2113988_2114249_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2114552_2115134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2115200_2115455_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2115441_2118066_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	2145849	2211392	4103209	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2145849_2146800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2147000_2147810_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2147934_2148885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2148881_2149775_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2149899_2150094_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2150093_2150435_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2150444_2152307_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2152436_2152949_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2152951_2153275_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2153276_2153687_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2153724_2154936_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2154953_2155466_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2155681_2156173_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2156425_2158462_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2158539_2159742_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2159870_2160521_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2162078_2163029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2163599_2163812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2163829_2164561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2164595_2165237_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2165229_2165898_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2168110_2168887_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2168908_2170066_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2170062_2170494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2170490_2171288_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2171307_2171709_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2171775_2172747_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2172812_2174036_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2174263_2175214_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2175337_2177791_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2177979_2179284_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2179388_2180042_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2180044_2181355_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2181533_2182112_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2182223_2182424_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2182769_2183336_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2183419_2183623_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2183929_2184250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2184291_2184573_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2184647_2185904_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2186286_2186616_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2188186_2189008_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2189007_2190147_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2190153_2191050_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2191064_2192972_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2193331_2195944_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2195996_2198297_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2198293_2199502_-	aminotransferase	NA	NA	NA	NA	NA
WP_077069000.1|2199763_2200132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2200128_2201079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2201177_2203172_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2203231_2204197_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2204186_2207048_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2207050_2207557_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2207661_2208870_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2208871_2209810_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2209971_2210445_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2210441_2211392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	2505014	2563258	4103209	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2505014_2505965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2506444_2507101_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2507115_2508783_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2508785_2509415_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2509626_2510721_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2510865_2511678_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2511681_2513265_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2513435_2514566_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2514752_2515829_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2515910_2516561_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2516575_2517979_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2518262_2519081_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2519077_2519782_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2520681_2521797_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2521830_2522205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2522227_2523385_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2523397_2523631_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2524265_2527235_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2527249_2527459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2527610_2528240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2528236_2530294_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2530350_2531031_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2531027_2531588_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2531594_2532692_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2532844_2533438_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2533434_2534727_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2534740_2535283_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2535292_2536129_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2536162_2537224_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2537265_2538318_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2538333_2538636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2538777_2539728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2539906_2541601_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2541597_2542683_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2542730_2543630_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2543640_2544285_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2545306_2548549_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2548559_2549714_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2549940_2550903_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2551001_2551952_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2552050_2553001_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2553010_2553700_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2553759_2554197_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2554242_2555136_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2555183_2556356_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2556352_2557507_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2557703_2558054_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2558043_2558478_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2558494_2559445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2559592_2560060_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2560040_2561198_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2561263_2562190_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2562307_2563258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	2605538	2672038	4103209	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2605538_2606489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2606858_2607431_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2607433_2608444_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2608436_2608937_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2608947_2609289_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2609357_2610092_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2610108_2610378_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2610400_2611189_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2611235_2612252_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2612468_2613911_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2614089_2615709_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2615829_2617650_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2617728_2619261_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2619294_2620941_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2621010_2622033_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2622050_2623184_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2623186_2623876_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2623875_2624661_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2624704_2625469_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2625507_2626929_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2626994_2627699_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2627746_2628166_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2628178_2628586_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2628769_2629480_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2629606_2629897_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2629914_2630397_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2634902_2636057_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2636362_2637379_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2637625_2638414_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2638480_2639161_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2639157_2639928_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2640026_2640977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2641032_2641950_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2641960_2643139_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2643158_2644154_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2645742_2646351_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2646338_2647379_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2647396_2648359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2648355_2649549_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2649545_2650343_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2650368_2651355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2651373_2653413_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2653614_2654295_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2654308_2655220_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2655216_2655795_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2655933_2656839_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2656846_2660266_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2660253_2662854_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2663809_2664442_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2664835_2665594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2665590_2666793_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2666980_2667931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2668838_2669984_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2669970_2670726_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2670842_2671022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2671087_2672038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	2834603	2900187	4103209	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2834603_2835554_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2835652_2836603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2836805_2837795_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2837878_2838232_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2838309_2838918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2840591_2841170_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2841194_2842148_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2842187_2843105_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2843226_2844153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2844160_2844907_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2845233_2846175_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2846401_2848099_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2848533_2849955_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2850108_2850888_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2851012_2851891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2851996_2853121_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2853166_2854129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2854121_2854976_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2855083_2855494_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2855490_2856441_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2856539_2857421_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2857498_2858878_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2858916_2859762_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2859777_2860092_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2860124_2860661_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2860833_2861409_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2861511_2862249_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2862316_2863954_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2864061_2864817_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2864804_2865767_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2865874_2866669_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2866730_2868806_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2868970_2871346_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2871426_2872782_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874260_2874983_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875037_2876021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876150_2877101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877097_2878000_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878087_2878846_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878858_2879950_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880047_2881475_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881704_2882919_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2882964_2885835_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888245_2888734_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888859_2891556_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891710_2893993_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2894157_2894790_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2894888_2895839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895885_2896440_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896507_2897353_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897422_2898391_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2898390_2900187_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	2917757	2978784	4103209	tRNA,holin,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2917757_2919278_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919320_2919623_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919619_2920252_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920330_2922196_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922192_2922987_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923015_2924131_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925035_2925914_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925913_2926738_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926905_2927856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928068_2930918_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930899_2931628_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931768_2933232_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933228_2933600_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933617_2934931_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2934967_2935426_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935538_2936489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936485_2937499_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937638_2938625_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2938983_2939691_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940271_2941222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941373_2941976_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2941994_2942627_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942671_2942923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942864_2944751_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2944769_2945612_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2945608_2946967_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2947187_2947982_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2948212_2949706_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2949941_2952023_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2952217_2953258_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2953392_2954409_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2954430_2955288_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2955332_2956109_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2956476_2957427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957453_2957918_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959124_2961413_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2961529_2962402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962444_2963599_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963633_2964464_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964547_2966092_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966134_2966494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966495_2966909_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2966949_2967267_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967351_2968068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968331_2969753_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2969819_2972567_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2972899_2973916_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974251_2974893_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2974983_2976420_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2976577_2977651_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2977647_2978784_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 23
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	2982537	3118745	4103209	tRNA,transposase	uncultured_Caudovirales_phage(10.0%)	118	NA	NA
WP_010931363.1|2982537_2983554_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984491_2985919_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2985915_2986938_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2986927_2987401_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2987541_2988429_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988425_2990069_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2990065_2991073_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2991903_2992920_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993019_2993652_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2993660_2994050_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994102_2995155_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996018_2997725_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2997798_2998299_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998313_3000371_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000397_3000691_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3000792_3001740_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3001752_3002628_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3002748_3003309_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003343_3003667_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004102_3004840_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005138_3006089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3006332_3006596_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3006669_3006951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3006967_3007828_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3007824_3008160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3008213_3008864_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3010544_3011489_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3011534_3011852_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3011854_3012793_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3012970_3013456_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3013474_3014023_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3014054_3014207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3015536_3016178_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3016332_3018681_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3018677_3019616_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3019641_3020832_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3020828_3021602_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3021631_3022825_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3022942_3023953_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3023970_3026007_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3026201_3026942_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3027040_3027991_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3028033_3029209_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029430_3031221_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031233_3032895_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3032907_3035613_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3035905_3037660_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3037656_3038283_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038279_3039131_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3039260_3041321_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3041507_3042122_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042267_3042519_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3042588_3043971_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3043967_3047147_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3047954_3048872_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3048923_3049655_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3049714_3050287_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3051795_3052812_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3052949_3053999_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054103_3055054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3055152_3056103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056198_3056924_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057134_3057515_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057820_3058693_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058700_3059081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059234_3060509_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3061996_3062905_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063702_3064767_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3066603_3067638_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067827_3068469_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068551_3070378_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070621_3071551_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071550_3072300_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072371_3073286_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073305_3074451_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074511_3075423_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075503_3076454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076552_3077137_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077171_3078161_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078157_3079099_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079095_3080316_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080358_3080673_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080864_3081224_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081225_3082941_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083128_3083800_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083814_3085143_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085139_3086039_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086125_3087211_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087203_3088334_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088336_3091018_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091388_3091970_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092095_3092821_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092817_3093495_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093710_3094892_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095664_3095847_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095876_3096827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096956_3097349_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097625_3098537_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098661_3099636_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099632_3100583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3100681_3101767_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3101864_3102275_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3102890_3104804_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3104939_3107552_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3107553_3108288_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3108451_3109633_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3109629_3109842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3109838_3110819_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3110864_3111692_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3111841_3113656_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3113710_3114094_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3114090_3115041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115153_3115405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3115598_3115814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115910_3117029_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117148_3117361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117520_3117742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117794_3118745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	3232066	3301069	4103209	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3232066_3233017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233013_3234033_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234042_3236751_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236898_3237555_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237653_3238604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238751_3239645_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239844_3241539_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241573_3242500_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242568_3243666_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243684_3244548_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244559_3245342_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245338_3246457_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246453_3247986_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248026_3249034_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249178_3249901_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249916_3250939_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251255_3251990_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252074_3253820_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253816_3254569_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254613_3255570_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255658_3256225_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256232_3257093_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257122_3257851_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257882_3258566_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259403_3260318_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260382_3261291_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261381_3262806_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262807_3264130_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264126_3266265_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266342_3271463_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271563_3271872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271941_3272499_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272514_3273996_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3274050_3275904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276166_3277504_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277538_3279536_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279553_3281602_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281732_3282599_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282867_3283833_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283947_3285096_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3285520_3285832_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285865_3286126_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286275_3287409_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287479_3288616_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288781_3289576_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289638_3290082_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290197_3291148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291270_3291678_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291750_3293946_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294167_3295118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295077_3295602_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295733_3296705_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296824_3299269_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299284_3299875_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300118_3301069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013080	Bordetella pertussis strain E194 chromosome, complete genome	4103209	3316515	3416628	4103209	protease,tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3316515_3317466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318197_3318575_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318559_3319261_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319404_3320097_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320096_3321200_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321309_3323682_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323678_3325238_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325262_3326060_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326091_3327237_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327341_3328784_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328786_3330016_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332153_3333104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334233_3334791_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334766_3335117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335285_3336080_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336076_3337126_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337125_3337815_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337901_3338399_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338430_3339747_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339763_3340738_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340774_3341233_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341232_3341913_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341915_3342344_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342396_3344127_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344192_3344765_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344745_3345432_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345787_3346459_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346787_3347009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347008_3347290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347286_3347802_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347801_3348353_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348331_3348574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348578_3349391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349390_3349654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349694_3349892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349872_3350289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350293_3354250_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354242_3354632_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354628_3355162_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355229_3355589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355598_3358211_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358236_3358527_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358544_3358874_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358883_3359402_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359656_3360157_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360164_3360587_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360583_3360982_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3360978_3361374_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361373_3361562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361575_3362058_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362120_3362372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363046_3363997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364425_3365028_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365150_3365393_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365398_3366454_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366482_3367901_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367903_3369181_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369167_3369653_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370292_3371243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3371499_3372189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372181_3372433_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3372987_3373599_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373670_3373877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374128_3375079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375177_3376251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376418_3377213_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377252_3377777_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377769_3379512_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379721_3380480_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380482_3381190_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381206_3382088_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382098_3382857_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382825_3383581_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383650_3385069_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385090_3385741_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385874_3386210_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386298_3387249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387325_3389146_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389150_3390224_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390346_3391315_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391388_3392300_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392318_3392891_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3392971_3393520_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393519_3395109_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395178_3395418_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395458_3396484_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396549_3397731_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397827_3398280_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398289_3399630_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3399946_3400984_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401365_3401725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401808_3402750_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402824_3403775_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404068_3405163_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405253_3406126_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406147_3406987_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407062_3408580_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408676_3409777_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409793_3410216_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410238_3410451_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410497_3411418_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411600_3412350_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412352_3412682_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3412969_3414322_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414333_3414717_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414778_3415579_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415677_3416628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
