The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	27282	70036	4106366	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	77634	136108	4106366	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	164893	225404	4106366	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	233336	286924	4106366	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	555309	614609	4106366	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568419_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574127_574286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584034_585255_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587291_588923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	620764	674505	4106366	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_023994644.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657839_659378_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659374_660571_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660567_661944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665540_665948_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666807_667032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668174_668477_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668521_669139_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669155_669464_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669460_671176_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_010929956.1|673554_674505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	723443	763393	4106366	transposase,tRNA,integrase,protease	Pseudomonas_phage(33.33%)	30	720691:720709	740579:740597
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728925_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749739_749895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751915_752863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754250_755201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|755218_755431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|755394_756210_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756342_757782_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757795_758137_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758191_759847_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759998_761009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761141_761915_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762442_763393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	773320	820938	4106366	transposase,holin,tRNA,protease	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|773320_774271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774409_775162_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775400_777125_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777144_778404_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778418_779513_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779509_781636_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781648_782329_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782606_783980_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783981_785001_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785064_786036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786100_787051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787149_787992_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787991_788327_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788397_789816_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790095_791136_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791215_791467_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791577_792741_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793024_793879_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793875_794766_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794808_795720_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795746_796439_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796453_797434_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797446_799588_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799636_800605_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800595_801264_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801224_802160_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802156_803053_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803049_803772_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803762_803927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804100_804604_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804880_805996_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806138_806603_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806750_807290_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807311_808646_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808659_808965_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809389_809971_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810052_811003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811101_812052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812492_813398_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813453_815058_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815314_816820_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816834_817299_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817588_818539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|818556_818745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|818701_819232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819231_819543_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819987_820938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	1005153	1099190	4106366	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1005153_1006104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007486_1008488_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009707_1010511_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022863_1023814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029251_1030538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030576_1031950_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034555_1035104_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035245_1036721_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038713_1039502_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041058_1042069_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042112_1043039_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1043746_1043893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1043910_1044861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044905_1047332_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047380_1048073_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051338_1052685_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052712_1053462_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053475_1054258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054450_1055401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055462_1056572_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057990_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058952_1059903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1059920_1060091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061866_1062817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065731_1066484_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067299_1068250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072926_1074189_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074230_1075469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076546_1077674_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081227_1082178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1082195_1082360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086293_1087244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087300_1088455_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088529_1089480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090011_1090809_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090856_1091510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091466_1092555_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092719_1094945_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097222_1098119_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1098072_1098222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1098239_1099190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	1129576	1200548	4106366	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1129576_1130527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130583_1131696_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134079_1135030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135620_1136397_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136514_1136778_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136878_1137883_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138083_1139685_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139710_1140469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140560_1141217_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141307_1142072_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142081_1142270_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142325_1143369_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143365_1143779_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143775_1144396_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144676_1145627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145794_1147186_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147258_1147837_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147953_1149351_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149466_1150672_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150771_1151290_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151384_1151630_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151857_1152172_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152261_1157451_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157447_1159616_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159671_1161987_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161991_1163311_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163329_1165003_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165007_1165676_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165832_1169654_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1169808_1169967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1169984_1170935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170956_1172102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172250_1173180_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173176_1174265_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174261_1175065_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175061_1175793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175850_1177140_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177236_1177839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182393_1182732_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183439_1183706_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_010929591.1|1185412_1186363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186359_1187691_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188951_1190952_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190944_1191586_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191582_1191990_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191986_1192787_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192861_1193566_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193597_1194392_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194388_1195339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195437_1196388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196486_1196921_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197003_1199340_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199531_1200548_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	1241619	1323754	4106366	transposase,tRNA	Bacillus_virus(28.57%)	60	NA	NA
WP_010929591.1|1241619_1242570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1242657_1244310_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1244320_1245109_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1245108_1245579_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1245653_1246967_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1247020_1247626_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1247942_1248893_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248889_1249840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250100_1251129_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251208_1252507_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252503_1253085_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253397_1257444_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_005012067.1|1265341_1266292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268044_1268665_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268800_1269601_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269655_1270747_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271983_1272400_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273191_1273566_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279866_1281249_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285604_1286393_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287595_1288684_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292547_1293693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293822_1294491_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300767_1301718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306298_1307759_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312198_1313629_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318789_1319593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321619_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322803_1323754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	1327865	1368534	4106366	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1327865_1328816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1328856_1329927_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1329949_1330828_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1330999_1331971_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1332133_1332976_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1333137_1333818_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1333811_1334981_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1334977_1336009_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1336052_1337294_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1337328_1338861_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1338941_1339565_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1339595_1340207_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1340242_1340713_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1341144_1342149_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1342185_1343700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1343703_1344663_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1344691_1345495_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1345496_1347131_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1347214_1348276_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1348474_1348744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1348747_1349272_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1349687_1350638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1350634_1351669_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351777_1352416_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352710_1352938_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353060_1353774_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1354018_1354969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1355072_1355354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355468_1356917_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1357027_1357978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1357974_1358424_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1358618_1359569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1359904_1360102_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1360117_1360477_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1360551_1361574_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1361586_1364004_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1364009_1364351_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1364409_1364820_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1365319_1366411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1366594_1367191_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1367290_1367473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1367583_1368534_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	1448211	1500359	4106366	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1448211_1449162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1449179_1449332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1449328_1449682_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449694_1450057_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450098_1450524_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450726_1451983_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452181_1453162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453311_1454553_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454651_1455602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455610_1456306_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459127_1459727_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459737_1461903_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461926_1463711_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463710_1463800_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464494_1464767_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464766_1466833_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466829_1467780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468944_1469277_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469273_1469960_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469946_1470906_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470947_1473308_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473307_1473940_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474041_1475382_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475428_1476784_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476909_1477554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477498_1477816_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478088_1478604_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478697_1478859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478874_1479630_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479968_1480175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480182_1480842_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481136_1483341_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483451_1484675_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484797_1485772_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485839_1487033_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487047_1487848_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487844_1489701_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489697_1490303_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490321_1491707_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492432_1493659_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493747_1494530_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494628_1495579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495605_1496379_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496390_1497632_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499408_1500359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	1544284	1612370	4106366	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1544284_1544773_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544890_1545469_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545574_1545943_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546041_1546992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1546998_1548111_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548797_1550000_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1550035_1550182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1550203_1552864_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1552876_1556281_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556948_1559174_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559220_1559547_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559597_1560206_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560304_1561255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561324_1562089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1562085_1562685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562788_1563640_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563699_1564326_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564322_1565273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565371_1566484_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566473_1567475_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567580_1569092_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569088_1570393_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570504_1571065_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571332_1571887_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572342_1572558_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572812_1575410_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575406_1576594_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1577252_1577867_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1577955_1579083_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579094_1580000_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580892_1581843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582024_1582777_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582845_1583505_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583501_1584230_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584242_1586522_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586546_1586750_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586791_1587424_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587559_1588477_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588473_1589187_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589424_1590195_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590199_1590799_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591043_1592534_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592592_1592877_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1593014_1593170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1593442_1594369_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594505_1595246_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595412_1596789_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596970_1597876_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599527_1601330_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1601456_1602098_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602196_1603147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603168_1604389_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604574_1605987_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606050_1607118_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607117_1608605_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608614_1609559_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609718_1610417_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610494_1611400_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611419_1612370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	1648319	1696141	4106366	transposase	Brazilian_cedratvirus(33.33%)	40	NA	NA
WP_005013747.1|1648319_1649270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649328_1650102_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650094_1651651_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651647_1652598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653924_1654527_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654766_1655468_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655461_1656244_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656428_1657379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1657477_1658428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658526_1659264_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659453_1660212_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660258_1661248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661425_1662394_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663933_1664902_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664910_1665852_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666325_1667336_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667326_1668841_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668837_1670184_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1670186_1671221_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671270_1672896_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673448_1674399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674503_1675451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675504_1677319_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677311_1677986_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678115_1681190_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681203_1681503_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681817_1682441_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1682684_1683554_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683531_1684476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684561_1685488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685600_1686380_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686370_1687567_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687597_1688548_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688769_1689459_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689523_1690279_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690330_1691323_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691332_1692286_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692401_1693364_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694765_1695194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695190_1696141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	1937723	2007375	4106366	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937723_1940381_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940458_1941661_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941657_1942170_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942292_1942730_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943006_1943957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944055_1945006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1945259_1947065_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1947178_1947346_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947409_1947646_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1948014_1949214_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950729_1951680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952131_1953133_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953305_1954163_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954159_1955422_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955522_1955897_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1955969_1957157_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957241_1958012_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958125_1958890_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958840_1960142_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1960138_1960945_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1962689_1963661_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963817_1964330_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964488_1965463_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966463_1967258_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967283_1968090_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968200_1968791_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968801_1969980_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970082_1970457_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970709_1972041_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972107_1975338_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976828_1977575_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977659_1978121_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978158_1979217_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979179_1981009_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981048_1981621_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983045_1983867_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984185_1985508_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985867_1986503_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986462_1987413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988283_1989156_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989233_1990373_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990731_1991988_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991993_1992521_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992525_1993344_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993343_1994066_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994087_1994402_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994419_1995568_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995598_1996474_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996470_1997790_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997862_1999059_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999069_2000557_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003151_2004051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004188_2005154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005252_2006203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006424_2007375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	2018871	2069316	4106366	transposase	Erysipelothrix_phage(16.67%)	46	NA	NA
WP_005013747.1|2018871_2019822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020959_2021256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021430_2022783_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022925_2023942_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025921_2026935_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2027021_2027927_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028083_2028428_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028585_2029044_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029057_2031274_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031270_2032332_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032360_2033335_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033286_2034105_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034117_2034726_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2034900_2035296_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035314_2036754_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036782_2037130_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037148_2038099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038751_2039702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039785_2041603_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041676_2042324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042336_2043266_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043435_2043900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044147_2044828_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044876_2046568_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046583_2047135_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047131_2047503_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047615_2048452_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048462_2048987_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049084_2049264_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049393_2050368_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050498_2050855_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050844_2051720_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051818_2052703_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052724_2054020_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054968_2055619_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2055706_2057227_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057484_2059350_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060395_2061346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2061444_2062395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162272313.1|2062412_2062553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2063367_2063727_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2063714_2065151_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2065147_2065801_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2065797_2066991_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2067094_2068369_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2068365_2069316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	2080520	2121211	4106366	transposase,tRNA,protease	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2080520_2081471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2081569_2082520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2082479_2082893_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2083177_2083477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2083886_2086169_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2086854_2088885_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2088904_2089117_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2089394_2089934_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2090047_2091343_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2091419_2092577_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2092760_2093660_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2093678_2094983_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2094948_2096055_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2096142_2096379_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2096517_2097588_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2097591_2098947_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2098973_2100134_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2100136_2100775_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2100776_2102063_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2102121_2103417_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2103423_2103930_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2103926_2105075_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2105102_2105528_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2105850_2108733_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2108825_2109581_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2110346_2111696_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2111794_2112745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2112843_2113794_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2113867_2114341_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2114366_2115575_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2115571_2116345_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2116344_2116968_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2117133_2117394_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2117697_2118279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2118345_2118600_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2118586_2121211_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	2148994	2214543	4106366	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2148994_2149945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2150145_2150955_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2151079_2152030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2152026_2152920_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2153044_2153239_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2153238_2153580_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2153589_2155452_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2155581_2156094_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2156096_2156420_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2156421_2156832_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2156869_2158081_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2158098_2158611_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2158826_2159318_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2159570_2161607_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2161684_2162887_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2163015_2163666_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2165223_2166174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2166744_2166957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2166974_2167706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2167740_2168382_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2168374_2169043_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2171255_2172032_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2172053_2173211_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2173207_2173639_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2173635_2174439_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2174452_2174854_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2174920_2175892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2175957_2177181_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2177408_2178359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2178482_2180936_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2181124_2182429_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2182533_2183187_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2183189_2184500_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2184696_2185257_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2185368_2185569_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2185914_2186481_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2186564_2186768_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2187074_2187395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2187436_2187718_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2187792_2189049_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2189431_2189761_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2191331_2192153_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2192152_2193292_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2193298_2194195_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2194191_2196117_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2196476_2199089_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2199141_2201442_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2201438_2202647_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2202908_2203283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2203279_2204230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2204328_2206323_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2206382_2207348_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2207337_2210199_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2210201_2210708_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2210812_2212021_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2212022_2212961_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2213122_2213596_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929584.1|2213592_2214543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	2508185	2566429	4106366	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2508185_2509136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509615_2510272_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510286_2511954_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511956_2512586_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512797_2513892_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514036_2514849_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2514852_2516556_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2516606_2517737_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517923_2519000_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519081_2519732_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519746_2521150_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521433_2522252_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2522248_2522953_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523852_2524968_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2525001_2525376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525398_2526556_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526568_2526802_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527436_2530406_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530420_2530630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530781_2531411_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2531407_2533498_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533521_2534202_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534198_2534759_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534765_2535863_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536015_2536609_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536605_2537898_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537911_2538454_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538463_2539300_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539333_2540395_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540436_2541489_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541504_2541807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541948_2542899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2542916_2543081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2543077_2544772_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544768_2545854_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545901_2546801_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546811_2547456_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548477_2551720_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551730_2552885_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553111_2554074_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554172_2555123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555221_2556172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2556181_2556871_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2556930_2557368_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2557413_2558307_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2558354_2559527_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2559523_2560678_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2560874_2561225_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2561214_2561649_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2561665_2562616_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2562763_2563231_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2563211_2564369_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2564434_2565361_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2565478_2566429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	2608708	2675190	4106366	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608708_2609659_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610028_2610601_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610603_2611614_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611606_2612107_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612117_2612459_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2612470_2613262_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613278_2613548_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613570_2614359_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614405_2615422_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615620_2617063_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617241_2618861_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2618981_2620802_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620880_2622413_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2622446_2624093_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624162_2625185_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625202_2626336_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626338_2627028_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627027_2627813_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627856_2628621_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628659_2630081_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630146_2630851_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630898_2631318_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631330_2631738_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631921_2632632_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632758_2633049_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633066_2633549_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638054_2639209_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639514_2640531_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640777_2641566_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641632_2642313_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642309_2643080_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643178_2644129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644184_2645102_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645112_2646291_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646310_2647306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648894_2649503_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649490_2650531_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650548_2651511_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651507_2652701_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652697_2653495_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653520_2654507_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654525_2656565_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2656766_2657447_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657460_2658372_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658368_2658947_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659085_2659991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2659998_2663418_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663405_2666006_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666961_2667594_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2667987_2668746_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2668742_2669945_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670132_2671083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2671990_2673136_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673122_2673878_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2673994_2674174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2674239_2675190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	2874578	2947901	4106366	transposase,tRNA,protease	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2874578_2875934_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2877412_2878135_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2878189_2879173_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2879302_2880253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2880249_2881152_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2881239_2881998_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2882010_2883102_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2883199_2884627_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2884856_2886071_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2886116_2888987_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2891397_2891886_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2892011_2894708_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2894862_2897145_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2897316_2897940_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2898038_2898989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2899035_2899590_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2899657_2900503_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2900572_2901541_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2901540_2902404_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2905236_2909163_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2909898_2913129_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2913410_2914238_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2914271_2914967_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2914959_2916240_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2916249_2917227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2917208_2918909_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2919011_2920115_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2920145_2920901_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2920907_2922428_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2922470_2922773_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2922769_2923402_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2923480_2925346_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2925342_2926137_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2926165_2927281_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2928185_2929064_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2929063_2929888_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2930055_2931006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2931218_2934068_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2934049_2934778_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934918_2936382_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2936378_2936750_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2936767_2938081_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2938117_2938576_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2938530_2938671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2938688_2939639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2939635_2940649_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2940788_2941775_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2942133_2942841_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2943421_2944372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2944523_2945126_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945144_2945777_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2945821_2946073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2946014_2947901_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 24
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	2959626	3009239	4106366	transposase,holin,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2959626_2960577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960603_2961068_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962274_2964563_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964679_2965552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965594_2966749_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966783_2967614_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967697_2969242_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969284_2969644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969645_2970059_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970099_2970417_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970501_2971218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971481_2972903_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972969_2975717_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2976049_2977066_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2977401_2978043_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2978133_2979570_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2979727_2980801_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2980797_2981934_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2982078_2982423_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2982489_2984370_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2984419_2985355_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2985687_2986704_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2987641_2989069_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2989065_2990088_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2990077_2990551_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2990691_2991579_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2991575_2993219_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2993215_2994265_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2995053_2996070_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996169_2996802_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996810_2997200_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997252_2998305_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999168_3000875_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000948_3001449_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001463_3003521_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003547_3003841_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003942_3004890_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004902_3005778_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005898_3006459_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006493_3006817_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007252_3007990_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008288_3009239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	3030190	3102684	4106366	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3030190_3031141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031183_3032359_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032580_3034371_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3034383_3036045_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3036057_3038763_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3039055_3040810_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040806_3041433_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041429_3042281_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3042356_3044471_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3044657_3045272_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045417_3045669_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045738_3047121_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3047117_3050297_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3051104_3052022_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3052073_3052805_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052864_3053437_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054945_3055962_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3056099_3057149_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057253_3058204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3058299_3059025_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3059235_3059616_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3059921_3060794_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3060801_3061182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3061335_3062610_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3064097_3065006_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3065803_3066868_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3068704_3069706_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3069928_3070570_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3070652_3072479_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3072722_3073652_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3073651_3074401_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3074472_3075387_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3075406_3076552_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3076612_3077524_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3077604_3078555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3078653_3079238_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3079272_3080262_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3080258_3081200_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3081196_3082417_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3082459_3082774_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3082965_3083325_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3083326_3085042_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3085229_3085901_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085915_3087244_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3087240_3088140_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3088226_3089312_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3089304_3090438_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3090437_3093119_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3093489_3094071_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3094196_3094922_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094918_3095596_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3095811_3096993_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3097765_3097948_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3097977_3098928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3099057_3099450_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099726_3100638_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100762_3101737_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101733_3102684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	3116191	3169709	4106366	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3116191_3117142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117254_3117506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118011_3119130_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119249_3119462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119621_3119843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119895_3120846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122022_3123393_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123425_3124217_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124229_3125285_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125310_3126186_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126291_3126540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126574_3128029_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128025_3128547_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128575_3129928_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130151_3133040_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135184_3136486_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3136500_3137217_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137498_3138179_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3138190_3138358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3138466_3138613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3138706_3139366_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139764_3141597_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141593_3142544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3143707_3145423_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3145433_3145925_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3145997_3147014_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3147181_3147961_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147979_3148507_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3148800_3149070_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3149160_3151320_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3151440_3152160_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3152156_3153107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3153247_3154465_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3154458_3155070_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3155703_3156681_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3156824_3157571_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3157592_3158039_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3158826_3161058_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3161080_3161881_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3162162_3163395_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3163505_3164495_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3164525_3165914_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3167512_3168496_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3168692_3169709_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	3234167	3307329	4106366	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3234167_3235118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3235114_3236134_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3236143_3238852_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3238999_3239656_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3239754_3240705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240852_3241746_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241945_3243640_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3243674_3244601_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3244669_3245767_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3245785_3246649_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3246660_3247443_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3247439_3248558_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3248554_3250087_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3250127_3251135_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3251279_3252002_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3252017_3253040_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3253356_3254091_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3254175_3255921_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255917_3256670_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3256714_3257671_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3257759_3258326_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3258333_3259194_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3259223_3259952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3259983_3260667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3261504_3262419_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3262483_3263392_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3263482_3264907_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264908_3266231_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3266227_3268366_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3268443_3273564_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3273664_3273973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3274042_3274600_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3274615_3276097_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3278267_3279605_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3279639_3281637_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3281654_3283703_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3283833_3284700_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284968_3285934_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3286048_3287197_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3287621_3287933_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287966_3288227_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3288376_3289510_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3289580_3290717_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290882_3291677_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3291739_3292183_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3292298_3293249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3293350_3293779_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3293851_3296047_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3296268_3297219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297178_3297703_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297834_3298806_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298925_3301370_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301385_3301976_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3302219_3303170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3303327_3304593_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3304626_3305724_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3306378_3307329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	3318616	3418729	4106366	transposase,tRNA,tail,protease,terminase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3318616_3319567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320298_3320676_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3320660_3321362_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321505_3322198_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322197_3323301_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323410_3325783_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3325779_3327339_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327363_3328161_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328192_3329338_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329442_3330885_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330887_3332117_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3334254_3335205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336334_3336892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336867_3337218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337386_3338181_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338177_3339227_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339226_3339916_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3340002_3340500_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340531_3341848_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341864_3342839_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342875_3343334_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343333_3344014_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3344016_3344445_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344497_3346228_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346293_3346866_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3346846_3347533_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347888_3348560_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348888_3349110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3349109_3349391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349387_3349903_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349902_3350454_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350432_3350675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3350679_3351492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351491_3351755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3351795_3351993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351973_3352390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352394_3356351_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356343_3356733_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3356729_3357263_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357330_3357690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3357699_3360312_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360337_3360628_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3360645_3360975_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3360984_3361503_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3361757_3362258_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362265_3362688_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3362684_3363083_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3363079_3363475_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3363474_3363675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3363676_3364159_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364221_3364473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365147_3366098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366526_3367129_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367251_3367494_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367499_3368555_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3368583_3370002_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3370004_3371282_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371268_3371754_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372393_3373344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3373361_3373583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3373600_3374290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374282_3374534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3375088_3375700_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3375771_3375978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376229_3377180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3377278_3378352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3378519_3379314_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3379353_3379878_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3379870_3381613_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3381822_3382581_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3382583_3383291_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3383307_3384189_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3384199_3384958_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384926_3385682_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3385751_3387170_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3387191_3387842_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3387975_3388311_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3388399_3389350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3389426_3391247_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3391251_3392325_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3392447_3393416_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3393489_3394401_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3394419_3394992_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3395072_3395621_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3395620_3397210_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3397279_3397519_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3397559_3398585_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3398650_3399832_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3399928_3400381_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3400390_3401731_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3402047_3403085_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3403466_3403826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3403909_3404851_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404925_3405876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3406169_3407264_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3407345_3408227_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3408248_3409088_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3409163_3410681_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3410777_3411878_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3411894_3412317_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3412339_3412552_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3412598_3413519_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3413701_3414451_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3414453_3414783_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3414989_3416423_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3416434_3416818_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3416879_3417680_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3417778_3418729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4106366	4028537	4081969	4106366	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028537_4029488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029657_4030884_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031083_4031950_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031942_4032905_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033005_4033956_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034054_4035005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035103_4036054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036050_4037544_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037540_4040648_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040644_4043713_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043709_4044960_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045140_4045902_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045934_4046585_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046587_4047427_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047667_4048411_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048493_4048841_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048938_4049781_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049825_4050713_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050739_4050928_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051025_4052483_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052469_4053996_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054014_4054482_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054481_4055504_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055624_4056344_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056419_4057520_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057521_4058712_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058831_4059848_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060166_4060838_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060834_4061743_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061954_4062602_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066453_4067530_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067540_4068350_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068439_4069213_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069213_4069378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069395_4070346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070234_4071257_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071246_4072401_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072440_4073853_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073977_4074844_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074845_4075670_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075666_4076428_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076508_4077195_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077368_4078376_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078372_4079152_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079209_4080472_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081018_4081969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
