The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	27282	70036	4106401	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	77634	136108	4106401	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	164893	225404	4106401	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	233336	286924	4106401	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	555309	614609	4106401	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568428_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584034_585174_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587291_588923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	620764	674505	4106401	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657839_659378_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659374_660571_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660567_661944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665540_665948_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666807_667032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668174_668477_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668521_669139_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669155_669464_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669460_671176_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673554_674505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	723443	763393	4106401	integrase,protease,tRNA,transposase	Pseudomonas_phage(33.33%)	29	720691:720709	740579:740597
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729288_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736221_736422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751915_752863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754250_755201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755394_756210_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756342_757782_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757795_758137_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758191_759847_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759998_761009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761141_761915_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762442_763393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	773320	820938	4106401	holin,protease,tRNA,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773320_774271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774409_775162_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|775436_777125_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|777144_778404_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778418_779513_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|779509_781573_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|781648_782329_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782606_783980_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783981_785001_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785064_786036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786100_787051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787149_787992_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787991_788327_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788397_789816_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790095_791136_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791215_791467_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791577_792741_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793024_793879_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793875_794766_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794808_795720_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795746_796439_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796453_797434_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797446_799588_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799636_800605_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800595_801264_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801224_802160_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802156_803053_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803049_803772_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803762_803927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804100_804604_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804880_805996_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806138_806603_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806750_807290_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807311_808646_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808659_808965_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809389_809971_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810052_811003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811101_812052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812492_813398_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|813453_815061_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815314_816820_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816834_817299_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817588_818539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818701_819232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819231_819543_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819987_820938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	996798	1099191	4106401	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996798_997914_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998014_998833_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998930_999542_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999701_1001078_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001140_1001599_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001683_1002379_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1002440_1002722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003284_1004037_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004081_1005158_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005154_1006105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006207_1006870_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006964_1007135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007487_1008489_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008491_1009688_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009708_1010512_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010592_1010889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010919_1011483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011523_1012381_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012388_1013138_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013159_1014032_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014060_1014840_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014873_1015671_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018325_1018718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018711_1019572_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019575_1020538_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021314_1022004_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022864_1023815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024164_1025034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025104_1025800_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025789_1026299_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026295_1027516_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027463_1028366_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029252_1030539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030577_1031951_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031989_1032691_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032989_1033979_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034079_1034541_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034556_1035105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035246_1036722_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036827_1037919_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037922_1038705_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038714_1039503_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040628_1041063_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041059_1042070_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042113_1043040_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043326_1043695_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043911_1044862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044906_1047333_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047381_1048074_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048146_1049346_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049363_1050269_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050384_1051314_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051339_1052686_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052698_1053463_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053476_1054259_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054451_1055402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055463_1056573_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057085_1057922_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058048_1058957_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058953_1059904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060289_1060832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061867_1062818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063059_1063428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063473_1064598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065732_1066473_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066576_1067197_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067300_1068251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068247_1070356_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070500_1071160_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071191_1071656_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071931_1072117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072168_1072921_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072927_1074190_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074231_1075470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076547_1077675_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077685_1078513_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078499_1079366_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080732_1081137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081228_1082179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082548_1083460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083474_1084185_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084181_1085426_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085427_1085862_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085890_1086196_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086294_1087245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087301_1088450_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088530_1089481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090012_1090810_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090857_1091511_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091467_1092556_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092720_1094946_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097223_1098120_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098240_1099191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	1129576	1200547	4106401	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129576_1130527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130583_1131696_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134079_1135030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135620_1136397_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136514_1136778_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136878_1137883_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138083_1139685_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139710_1140469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140560_1141217_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141307_1142072_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142081_1142270_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142325_1143369_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143365_1143779_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143775_1144396_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144676_1145627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145794_1147186_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147258_1147837_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147953_1149351_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149466_1150672_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150771_1151290_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151384_1151630_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151857_1152172_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152270_1157451_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157447_1159616_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159671_1161987_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161991_1163311_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163329_1165003_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165007_1165676_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165832_1169654_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169984_1170935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170956_1172102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172250_1173180_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173176_1174265_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174261_1175065_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175061_1175793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175850_1177140_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177236_1177839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182392_1182731_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183438_1183705_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185411_1186362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186358_1187690_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188950_1190951_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190943_1191585_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191581_1191989_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191985_1192786_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192860_1193565_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193596_1194391_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194387_1195338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195436_1196387_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196485_1196920_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197002_1199339_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199530_1200547_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	1247941	1328816	4106401	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247941_1248892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248888_1249839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250099_1251128_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251207_1252506_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252502_1253084_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253396_1257443_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257683_1265345_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265341_1266292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268044_1268665_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1268800_1269601_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269655_1270747_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271983_1272400_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273191_1273566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279866_1281249_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285604_1286393_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1286518_1288684_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1292547_1293750_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1293822_1294491_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300767_1301718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306298_1307759_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312198_1313629_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318789_1319593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1321640_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322803_1323754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324375_1326103_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326214_1327573_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931070.1|1327865_1328816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	1448211	1500364	4106401	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1448211_1449162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449328_1449682_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449694_1450057_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450098_1450524_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450726_1451983_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452181_1453162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453311_1454553_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454651_1455602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455610_1456306_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459127_1459727_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459737_1461903_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461926_1463711_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463710_1463800_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464494_1464767_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464766_1466833_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466829_1467780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468944_1469277_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469273_1469960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1469946_1470906_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1470938_1473308_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473307_1473940_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474041_1475382_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475428_1476784_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1477074_1477311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477498_1477816_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478088_1478604_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1478874_1479630_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479968_1480175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480182_1480842_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481136_1483341_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483451_1484675_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484797_1485772_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485839_1487033_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487047_1487848_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487844_1489701_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489697_1490303_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490321_1491707_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492432_1493659_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1493747_1494530_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494628_1495579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495605_1496379_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496390_1497632_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499413_1500364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	1544289	1612375	4106401	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1544289_1544778_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544895_1545474_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545579_1545948_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546046_1546997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547003_1548116_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548802_1550005_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1550208_1552869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1552881_1556286_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556953_1559179_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559225_1559552_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559602_1560211_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560309_1561260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561329_1562094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1562090_1562627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562793_1563645_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563704_1564331_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564327_1565278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565376_1566489_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566478_1567480_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567585_1569097_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569093_1570398_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570509_1571070_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571337_1571892_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572347_1572563_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572817_1575415_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575411_1576599_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1577257_1577872_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1577960_1579082_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579099_1580005_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580897_1581848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582029_1582782_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582850_1583510_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583506_1584235_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584247_1586527_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586551_1586755_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586796_1587429_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587564_1588482_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588478_1589192_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589429_1590200_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590204_1590804_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591048_1592539_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592597_1592882_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1593447_1594374_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594510_1595251_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595417_1596794_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596975_1597881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599532_1601335_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1601452_1602103_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602201_1603152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603173_1604394_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604579_1605992_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606055_1607123_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607122_1608610_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608619_1609564_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609723_1610422_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610499_1611405_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611424_1612375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	1648324	1703915	4106401	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648324_1649275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649333_1650107_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650099_1651656_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651652_1652603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653929_1654532_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654771_1655473_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655466_1656249_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656433_1657384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657482_1658220_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658409_1659168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659214_1660204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660381_1661350_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662889_1663858_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663866_1664808_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665281_1666292_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666282_1667797_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667793_1669140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1669142_1670177_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670226_1671852_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672404_1673355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673459_1674407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674460_1676275_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676267_1676942_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677071_1680146_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680159_1680459_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680773_1681397_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1681640_1682510_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682487_1683432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683517_1684444_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1684556_1685336_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685326_1686523_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686553_1687504_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687725_1688415_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688479_1689235_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689286_1690279_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690288_1691242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691357_1692320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693721_1694150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694146_1695097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1695390_1696113_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696551_1697739_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1697742_1698093_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699842_1700814_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700827_1701541_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701545_1702463_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702569_1702866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1702964_1703915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	1873414	1945011	4106401	tRNA,transposase	Faecalibacterium_phage(33.33%)	60	NA	NA
WP_010931070.1|1873414_1874365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930677.1|1876245_1877958_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_010930678.1|1878414_1879233_+	membrane protein	NA	NA	NA	NA	NA
WP_003820212.1|1879330_1879507_+	Flp family type IVb pilin	NA	NA	NA	NA	NA
WP_003820213.1|1879576_1880101_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_010930679.1|1880061_1880505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930680.1|1880506_1880983_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_010930681.1|1880979_1881921_+	Flp pilus assembly protein CpaB	NA	NA	NA	NA	NA
WP_010930682.1|1881976_1883326_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_010930683.1|1883322_1884672_+	pilus assembly protein CpaE	NA	NA	NA	NA	NA
WP_010930684.1|1886030_1886951_+	membrane protein	NA	NA	NA	NA	NA
WP_014486078.1|1886959_1887946_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_010930685.1|1887945_1888788_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930686.1|1889211_1891455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820229.1|1891476_1892868_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810189.1|1892947_1893643_+	DUF2968 domain-containing protein	NA	NA	NA	NA	NA
WP_010930687.1|1893742_1894210_+	DUF1178 family protein	NA	NA	NA	NA	NA
WP_010930688.1|1894267_1894972_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930689.1|1895118_1895688_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930690.1|1895684_1896095_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_003810194.1|1896214_1896772_-	elongation factor P	NA	NA	NA	NA	NA
WP_010930691.1|1896914_1898027_-	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA	NA
WP_010930692.1|1898042_1899245_-	DUF2863 family protein	NA	NA	NA	NA	NA
WP_023853586.1|1899351_1900191_+	dioxygenase	NA	NA	NA	NA	NA
WP_003820240.1|1900299_1903005_-	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_010930694.1|1903242_1903845_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930695.1|1904121_1906326_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930696.1|1906488_1907223_+	haloacid dehalogenase type II	NA	NA	NA	NA	NA
WP_005012067.1|1907299_1908250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|1908331_1908880_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|1908882_1909221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|1909615_1912207_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_029443737.1|1912273_1913017_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_003810206.1|1913029_1913416_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|1913422_1913713_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|1913848_1914148_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|1914216_1915119_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|1915122_1915893_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|1916278_1916728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1916795_1917746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1917844_1918795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077107989.1|1918781_1919012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926318.1|1919156_1920068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1920293_1921811_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|1923042_1924005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|1924093_1924342_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|1930899_1931343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|1931407_1931680_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|1931676_1932624_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|1932805_1934200_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|1934222_1934618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|1934614_1935874_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|1935995_1937051_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|1937053_1937713_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|1937728_1940386_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940463_1941666_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941662_1942175_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942297_1942735_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943011_1943962_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944060_1945011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	1950734	2023947	4106401	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|1950734_1951685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952136_1953138_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953310_1954168_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954164_1955427_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955527_1955902_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1955974_1957162_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957246_1958017_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958130_1958895_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958845_1960147_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1960143_1960950_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1962694_1963666_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963822_1964335_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964493_1965468_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966468_1967263_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967288_1968095_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968205_1968796_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968806_1969985_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970087_1970462_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970714_1972046_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972112_1975343_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976833_1977580_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977664_1978126_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978163_1979222_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979184_1981014_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981053_1981626_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983050_1983872_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984190_1985513_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985872_1986508_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986467_1987418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988288_1989161_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989238_1990378_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990736_1991993_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991998_1992526_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992530_1993349_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993348_1994071_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994092_1994407_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994424_1995573_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995603_1996479_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996475_1997795_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997867_1999064_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999074_2000562_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003156_2004056_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004193_2005159_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005257_2006208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006429_2007380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2007376_2007679_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2007838_2008243_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2008235_2009462_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2009458_2009905_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2009974_2010757_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2010798_2012304_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2012589_2013423_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2014860_2015682_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2015700_2016555_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2016558_2017530_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2018214_2018391_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2018876_2019827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020964_2021261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021435_2022788_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022930_2023947_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	2037153	2082525	4106401	transposase	Bacillus_phage(25.0%)	45	NA	NA
WP_010929577.1|2037153_2038104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038756_2039707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039790_2041608_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041681_2042329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042341_2043271_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043440_2043905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044152_2044833_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044881_2046573_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046588_2047140_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047136_2047508_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047620_2048457_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048467_2048992_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049089_2049269_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049398_2050373_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050503_2050860_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050849_2051725_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051823_2052708_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052729_2054025_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054973_2055624_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2055711_2057232_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057489_2059355_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060400_2061351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2061368_2061509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2062323_2062683_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062670_2064107_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064103_2064757_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2064753_2065947_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066050_2067325_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067321_2068272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2068370_2069321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2069487_2070462_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2070458_2070602_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2072223_2072886_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2072888_2073065_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2073061_2074000_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2074091_2075582_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2075667_2075820_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2075833_2076073_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2076168_2076912_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2076920_2077445_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2077543_2078467_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2078463_2079225_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2079240_2080326_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2080525_2081476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2081574_2082525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	2092765	2152035	4106401	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_010930787.1|2092765_2093665_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2093683_2094988_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2094953_2096060_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2096147_2096384_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2096522_2097593_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2097596_2098952_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2098978_2100136_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2100141_2100780_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2100781_2102077_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2102126_2103413_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2103428_2103935_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2103931_2105080_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2105107_2105533_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2105855_2108738_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2108830_2109586_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2110351_2111701_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2111799_2112750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2112848_2113799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2113872_2114346_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2114371_2115580_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2115576_2116350_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2116349_2116973_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2117138_2117399_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2117702_2118284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2118350_2118605_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2118591_2121216_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2121287_2122106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2122102_2122708_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2122745_2123879_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2125594_2125969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2126066_2127341_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2127344_2128922_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2129828_2131184_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2131180_2132815_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2132807_2133638_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2133655_2134600_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2134652_2136227_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2136274_2136634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2136626_2136947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2137062_2137995_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2138097_2139054_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2139203_2140541_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2140545_2141802_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2141997_2143044_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2143101_2143470_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2143600_2144473_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2144549_2145452_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2146508_2147726_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2148999_2149950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2150150_2150960_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2151084_2152035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	2165228	2230049	4106401	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2165228_2166179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2166749_2166962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2166979_2167711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2167745_2168387_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2168379_2169048_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2171260_2172037_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2172058_2173216_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2173212_2173644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2173640_2174438_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2174457_2174859_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2174925_2175897_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2175962_2177186_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2177413_2178364_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2178487_2180941_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2181129_2182434_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2182538_2183192_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2183194_2184505_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2184683_2185262_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2185373_2185574_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2185919_2186486_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2186569_2186773_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2187079_2187400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2187441_2187723_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2187797_2189054_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2189436_2189766_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2191336_2192158_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2192157_2193297_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2193303_2194200_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2194214_2196122_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2196481_2199094_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2199146_2201447_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2201443_2202652_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2202913_2203288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2203284_2204235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2204333_2206328_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2206387_2207353_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2207342_2210204_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2210206_2210713_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2210817_2212026_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2212027_2212966_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2213127_2213601_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2213597_2214548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2214658_2215099_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2215227_2216457_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2216495_2217317_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2217370_2218522_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2218613_2219102_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2221652_2224202_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2224272_2226846_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2227111_2227312_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2227343_2227505_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2227562_2227901_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2228049_2229000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2229098_2230049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	2508200	2566444	4106401	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2508200_2509151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509630_2510287_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510301_2511969_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511971_2512601_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512812_2513907_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514051_2514864_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2514867_2516451_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2516621_2517752_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517938_2519015_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519096_2519747_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519761_2521165_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521448_2522267_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2522263_2522968_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523867_2524983_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2525016_2525391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525413_2526571_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526583_2526817_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527451_2530421_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530435_2530645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530796_2531426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2531422_2533480_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533536_2534217_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534213_2534774_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534780_2535878_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536030_2536624_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536620_2537913_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537926_2538469_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538478_2539315_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539348_2540410_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540451_2541504_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541519_2541822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541963_2542914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2543092_2544787_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544783_2545869_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545916_2546816_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546826_2547471_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548492_2551735_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551745_2552900_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553126_2554089_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554187_2555138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555236_2556187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2556196_2556886_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2556945_2557383_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2557428_2558322_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2558369_2559542_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2559538_2560693_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2560889_2561240_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2561229_2561664_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_005015810.1|2561680_2562631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2562778_2563246_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2563226_2564384_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2564449_2565376_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2565493_2566444_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	2608724	2675224	4106401	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608724_2609675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610044_2610617_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610619_2611630_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611622_2612123_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612133_2612475_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2612543_2613278_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613294_2613564_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613586_2614375_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614421_2615438_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615654_2617097_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617275_2618895_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2619015_2620836_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620914_2622447_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2622480_2624127_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624196_2625219_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625236_2626370_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626372_2627062_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627061_2627847_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627890_2628655_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628693_2630115_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630180_2630885_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630932_2631352_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631364_2631772_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631955_2632666_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632792_2633083_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633100_2633583_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638088_2639243_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639548_2640565_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640811_2641600_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641666_2642347_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642343_2643114_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643212_2644163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644218_2645136_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645146_2646325_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646344_2647340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648928_2649537_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649524_2650565_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650582_2651545_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651541_2652735_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652731_2653529_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653554_2654541_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654559_2656599_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2656800_2657481_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657494_2658406_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658402_2658981_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659119_2660025_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660032_2663452_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663439_2666040_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666995_2667628_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2668021_2668780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2668776_2669979_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670166_2671117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2672024_2673170_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673156_2673912_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674028_2674208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2674273_2675224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	2837789	2903374	4106401	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2837789_2838740_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2838838_2839789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2839991_2840981_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2841064_2841418_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2841495_2842104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2843777_2844356_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2844380_2845334_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2845373_2846291_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2846412_2847339_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2847346_2848093_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2848419_2849361_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2849587_2851285_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2851719_2853141_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2853294_2854074_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2854198_2855077_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2855182_2856307_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2856352_2857315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2857307_2858162_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2858269_2858680_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2858676_2859627_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2859725_2860607_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2860684_2862064_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2862102_2862948_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2862963_2863278_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2863310_2863847_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2864019_2864595_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2864697_2865435_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2865502_2867140_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2867247_2868003_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2867990_2868953_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2869060_2869855_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2869916_2871992_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2872156_2874532_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2874612_2875968_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2877446_2878169_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2878223_2879207_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2879336_2880287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2880283_2881186_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2881273_2882032_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2882044_2883136_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2883233_2884661_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2884890_2886105_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2886150_2889021_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2891431_2891920_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2892045_2894742_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2894896_2897179_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2897344_2897977_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2898075_2899026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2899072_2899627_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2899694_2900540_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2900609_2901578_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2901577_2903374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	2920944	2981971	4106401	holin,tRNA,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2920944_2922465_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2922507_2922810_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2922806_2923439_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2923517_2925383_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2925379_2926174_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2926202_2927318_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2928222_2929101_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2929100_2929925_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2930092_2931043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2931255_2934105_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2934086_2934815_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934955_2936419_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2936415_2936787_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2936804_2938118_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2938154_2938613_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2938725_2939676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2939672_2940686_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2940825_2941812_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2942170_2942878_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2943458_2944409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2944560_2945163_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945181_2945814_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2945858_2946110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2946051_2947938_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2947956_2948799_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2948795_2950154_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2950374_2951169_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2951399_2952893_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2953128_2955210_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2955404_2956445_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2956579_2957596_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2957617_2958475_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2958519_2959296_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2959663_2960614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960640_2961105_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962311_2964600_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964716_2965589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965631_2966786_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966820_2967651_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967734_2969279_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969321_2969681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969682_2970096_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970136_2970454_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970538_2971255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971518_2972940_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2973006_2975754_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2976086_2977103_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2977438_2978080_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2978170_2979607_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2979764_2980838_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2980834_2981971_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 25
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	2985724	3058240	4106401	tRNA,transposase	Pseudomonas_phage(14.29%)	59	NA	NA
WP_010930158.1|2985724_2986741_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2987678_2989106_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2989102_2990125_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2990114_2990588_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2990728_2991616_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2991612_2993256_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2993252_2994260_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2995090_2996107_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996206_2996839_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996847_2997237_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997289_2998342_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999205_3000912_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000985_3001486_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001500_3003558_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003584_3003878_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003979_3004927_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004939_3005815_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005935_3006496_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006530_3006854_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007289_3008027_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008325_3009276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3009519_3009783_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3009856_3010138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3010154_3011015_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3011011_3011347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3011400_3012051_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3013731_3014676_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3014721_3015039_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3015041_3015980_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3016157_3016643_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3016661_3017210_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3017241_3017394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3018723_3019365_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3019519_3021868_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3021864_3022803_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3022828_3024019_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3024015_3024789_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3024818_3026012_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3026129_3027140_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3027157_3029194_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3029388_3030129_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3030227_3031178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031220_3032396_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032617_3034408_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3034420_3036082_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3036094_3038800_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3039092_3040847_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040843_3041470_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041466_3042318_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3042447_3044508_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3044694_3045309_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045454_3045706_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045775_3047158_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_029443805.1|3051140_3052058_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3052109_3052841_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052900_3053473_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054981_3055998_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3056135_3057185_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057289_3058240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	3077640	3142580	4106401	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3077640_3078591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3078689_3079274_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3079308_3080298_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3080294_3081236_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3081232_3082453_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3082495_3082810_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3083001_3083361_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3083362_3085078_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3085265_3085937_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085951_3087280_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3087276_3088176_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3088262_3089348_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3089340_3090471_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3090473_3093155_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3093525_3094107_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3094232_3094958_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094954_3095632_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3095847_3097029_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3097801_3097984_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3098013_3098964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3099093_3099486_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099762_3100674_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100798_3101773_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101769_3102720_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3102818_3103904_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3104001_3104412_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3105027_3106941_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3107076_3109689_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3109690_3110425_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3110588_3111770_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3111766_3111979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3111975_3112956_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3113001_3113829_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3113978_3115793_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3115847_3116231_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3116227_3117178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117290_3117542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3117735_3117951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118047_3119166_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119285_3119498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119657_3119879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119931_3120882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122058_3123429_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123461_3124253_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124265_3125321_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125346_3126222_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126327_3126576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126610_3128065_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128061_3128583_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128611_3129964_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130187_3133076_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135220_3136522_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3136536_3137253_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137534_3138215_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3138742_3139402_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139800_3141633_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141629_3142580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	3234203	3303206	4106401	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3234203_3235154_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3235150_3236170_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3236179_3238888_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3239035_3239692_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3239790_3240741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240888_3241782_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241981_3243676_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3243710_3244637_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3244705_3245803_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3245821_3246685_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3246696_3247479_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3247475_3248594_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3248590_3250123_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3250163_3251171_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3251315_3252038_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3252053_3253076_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3253392_3254127_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3254211_3255957_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255953_3256706_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3256750_3257707_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3257795_3258362_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3258369_3259230_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3259259_3259988_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3260019_3260703_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3261540_3262455_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3262519_3263428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3263518_3264943_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264944_3266267_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3266263_3268402_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3268479_3273600_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3273700_3274009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3274078_3274636_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3274651_3276133_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3276187_3278041_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3278303_3279641_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3279675_3281673_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3281690_3283739_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3283869_3284736_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3285004_3285970_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3286084_3287233_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3287657_3287969_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3288002_3288263_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3288412_3289546_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3289616_3290753_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290918_3291713_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3291775_3292219_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3292334_3293285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3293407_3293815_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3293887_3296083_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3296304_3297255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297214_3297739_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297870_3298842_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298961_3301406_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301421_3302012_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3302255_3303206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	3318652	3418765	4106401	tRNA,terminase,transposase,tail,protease	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3318652_3319603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320334_3320712_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3320696_3321398_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321541_3322234_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322233_3323337_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323446_3325819_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3325815_3327375_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327399_3328197_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328228_3329374_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329478_3330921_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330923_3332153_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3334290_3335241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336370_3336928_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336903_3337254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337422_3338217_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338213_3339263_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339262_3339952_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3340038_3340536_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340567_3341884_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341900_3342875_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342911_3343370_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343369_3344050_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3344052_3344481_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344533_3346264_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346329_3346902_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3346882_3347569_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347924_3348596_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348924_3349146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3349145_3349427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349423_3349939_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349938_3350490_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350468_3350711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3350715_3351528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351527_3351791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3351831_3352029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3352009_3352426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352430_3356387_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356379_3356769_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3356765_3357299_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357366_3357726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3357735_3360348_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360373_3360664_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3360681_3361011_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3361020_3361539_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3361793_3362294_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362301_3362724_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3362720_3363119_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3363115_3363511_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3363510_3363699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3363712_3364195_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364257_3364509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365183_3366134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366562_3367165_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367287_3367530_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367535_3368591_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3368619_3370038_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3370040_3371318_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371304_3371790_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372429_3373380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3373636_3374326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374318_3374570_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3375124_3375736_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3375807_3376014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376265_3377216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3377314_3378388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3378555_3379350_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3379389_3379914_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3379906_3381649_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3381858_3382617_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3382619_3383327_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3383343_3384225_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3384235_3384994_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384962_3385718_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3385787_3387206_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3387227_3387878_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3388011_3388347_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3388435_3389386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3389462_3391283_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3391287_3392361_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3392483_3393452_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3393525_3394437_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3394455_3395028_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3395108_3395657_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3395656_3397246_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3397315_3397555_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3397595_3398621_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3398686_3399868_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3399964_3400417_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3400426_3401767_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3402083_3403121_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3403502_3403862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3403945_3404887_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404961_3405912_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3406205_3407300_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3407390_3408263_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3408284_3409124_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3409199_3410717_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3410813_3411914_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3411930_3412353_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3412375_3412588_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3412634_3413555_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3413737_3414487_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3414489_3414819_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3415106_3416459_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3416470_3416854_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3416915_3417716_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3417814_3418765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013077	Bordetella pertussis strain C549 chromosome, complete genome	4106401	4005469	4070381	4106401	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005469_4005955_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006043_4006181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006173_4007154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007420_4008230_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008269_4008950_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008943_4009402_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009413_4009776_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009858_4010542_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010597_4010906_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010924_4011239_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011235_4013710_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013717_4015109_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015105_4015291_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015269_4015971_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015967_4016789_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016769_4017894_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017886_4018906_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019111_4020002_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020246_4021038_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021120_4021495_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021472_4022882_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022874_4024257_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024591_4026196_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026273_4027245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027255_4028182_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028572_4029523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029692_4030919_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031118_4031985_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031977_4032940_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033040_4033991_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034089_4035040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035138_4036089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036085_4037579_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037575_4040683_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040679_4043748_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043744_4044995_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045175_4045928_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045969_4046614_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046622_4047603_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047702_4048446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048528_4048876_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048973_4049816_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049860_4050748_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050774_4050963_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051060_4052518_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052504_4054031_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054049_4054517_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054516_4055539_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055659_4056400_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056454_4057555_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057556_4058747_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058866_4059883_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060201_4060873_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060869_4061778_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061989_4062637_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066497_4067565_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067575_4068385_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068474_4069248_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069430_4070381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
