The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	27282	70036	4107474	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	77634	123122	4107474	transposase,tRNA	Planktothrix_phage(25.0%)	43	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	165941	226452	4107474	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165941_166892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168335_169238_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170127_171558_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171591_172221_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172269_173877_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173901_174585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174666_175143_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175349_176300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177415_177943_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178034_178850_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178910_179645_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179682_181761_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182010_182283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182384_183470_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183473_185378_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185374_189049_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189109_189673_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189680_190103_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190130_190550_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190578_191025_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191151_191649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191803_194074_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194149_195355_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195453_196404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196506_197142_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197138_198032_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198426_199527_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199608_199983_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200042_202907_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203051_203792_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203861_205073_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205101_206070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206683_207634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207790_208114_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208218_209259_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209264_210044_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210089_210386_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210411_210687_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210743_211388_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211387_212074_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212272_213055_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213105_213831_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213862_215212_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215323_216256_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216713_219509_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220102_222946_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223116_223836_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223874_224423_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224577_225477_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225501_226452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	234384	287972	4107474	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234384_235335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235421_236372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236368_237319_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237417_238215_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239164_239575_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240596_241340_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241383_242427_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242597_244700_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246110_247067_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247085_247577_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247573_248929_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248929_249628_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249624_250326_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250578_251628_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251733_252675_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252671_254561_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254647_255286_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255428_256814_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256744_257281_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257432_258824_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258840_259821_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259956_260940_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261004_261904_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262010_263765_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263772_264897_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264910_265891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266621_267572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268131_268677_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268802_270380_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270395_271550_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271563_271689_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271685_273437_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273433_275113_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275175_275724_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276866_277145_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278188_279139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279125_279341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279416_279578_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280244_280694_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280703_281315_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281473_282322_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282347_283730_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283794_284436_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284575_285034_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285058_285835_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285888_287025_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287021_287972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	391905	449414	4107474	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391905_392856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392992_393910_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393906_394155_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394151_395357_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395429_396425_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396447_397668_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397664_398309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400039_400849_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401153_402107_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_077069043.1|402205_403189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403115_403817_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403865_404636_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404632_405811_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405978_407685_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407681_408578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408618_410208_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410257_411250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411318_411918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412378_413359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413434_414385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414473_415388_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415384_416044_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416133_417057_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417062_417518_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417514_418618_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|418573_418846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418805_420425_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420421_421480_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421609_422104_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422196_423174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423369_424575_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424571_426083_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426098_427412_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427602_427782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428191_428926_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431370_432321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432452_432851_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433261_433732_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433820_434165_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434264_435665_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437453_437972_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438082_438838_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439033_440266_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440258_441044_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441110_442082_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442092_443070_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443195_444368_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444394_445423_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445488_446682_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448463_449414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	591468	652659	4107474	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591468_592419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592894_593785_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593781_594603_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594802_595294_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595312_596386_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596432_597536_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597611_598232_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598252_598762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598816_599068_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599131_600265_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600272_600659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600655_603175_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603603_603942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603938_604445_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604506_605307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605417_606359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606452_607988_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609667_611518_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611521_612355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612354_613296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613547_614519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614660_616949_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617255_618164_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618218_619184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619258_620920_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620991_621702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621850_622801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623499_623883_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623940_624543_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624560_624962_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625077_625989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625985_626567_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627361_628096_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628136_629186_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629333_629912_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630298_631276_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631369_635764_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635964_636813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636971_637784_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637839_638790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638888_639689_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639750_640134_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640145_641498_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641785_642115_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642117_642867_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643049_643970_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644016_644229_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644251_644674_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644690_645791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645887_647405_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647480_648320_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648341_649214_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649304_650399_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	657983	704174	4107474	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657983_659009_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659049_659289_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659358_660948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660947_661496_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661576_662149_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662167_663079_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663152_664121_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664243_665317_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665321_667142_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667218_668169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668257_668593_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668726_669377_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669398_670817_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670886_671642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671610_672369_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672379_673261_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673277_673985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673987_674746_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674955_676698_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676690_677215_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677254_678049_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678216_679290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679388_680339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680590_680797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680868_681480_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682034_682286_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682278_682968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683224_684175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684814_685300_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685286_686564_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686566_687985_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688013_689069_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689074_689317_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689439_690042_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690470_691421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692095_692347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692409_692892_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692905_693094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693093_693489_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693485_693884_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693880_694303_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694310_694811_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695065_695584_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695593_695923_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695940_696231_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696256_698869_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698878_699238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699305_699839_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699835_700225_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700217_704174_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	710340	764270	4107474	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710340_712071_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712123_712552_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712554_713235_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713234_713693_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713729_714704_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714720_716037_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716068_716566_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716652_717342_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717341_718391_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718387_719182_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719350_719701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719676_720234_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721363_722314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724451_725681_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725683_727126_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727230_728376_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728407_729205_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729229_730789_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730785_733158_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733267_734371_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734370_735063_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735206_735908_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735892_736270_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737001_737952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738111_738984_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739324_739543_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739582_740962_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741003_742401_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742440_744093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744096_744981_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744980_745922_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746000_747620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747786_748602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748669_749239_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749239_750190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750844_751942_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751975_753241_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753398_754349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754592_755183_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755198_757643_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757762_758734_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758865_759390_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759349_760300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760521_762717_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762789_763197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763319_764270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	887908	955884	4107474	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887908_888925_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889121_890105_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891703_893092_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893122_894112_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894222_895455_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895736_896537_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896559_898791_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899578_900025_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900046_900793_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900936_901914_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902547_903159_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903152_904370_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904510_905461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905457_906177_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906297_908457_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908547_908817_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908905_909112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909110_909638_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909656_910436_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910603_911620_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911692_912184_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912194_913910_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915073_916024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916020_917853_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918251_918911_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919438_920119_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920400_921117_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921131_922433_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924577_927466_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927689_929042_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929070_929592_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929588_931043_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931077_931326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931431_932307_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932332_933388_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933400_934192_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934224_935595_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936771_937722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937774_937996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938155_938368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938487_939606_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939702_939918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940111_940363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940475_941426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941422_941806_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941860_943675_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943824_944652_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944697_945678_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945674_945887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945883_947065_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947228_947963_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947964_950577_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950712_952626_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953241_953652_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953749_954835_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010929591.1|954933_955884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	999413	1071931	4107474	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|999413_1000364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000468_1001518_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001655_1002672_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004180_1004753_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004812_1005544_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005595_1006513_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007320_1010500_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010496_1011879_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011948_1012200_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012345_1012960_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013146_1015207_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015336_1016188_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016184_1016811_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016807_1018562_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018854_1021560_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021572_1023234_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023246_1025037_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025258_1026434_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1026476_1027427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027525_1028266_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028460_1030497_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030514_1031525_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031642_1032836_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032865_1033639_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033635_1034826_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034851_1035790_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035786_1038135_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038289_1038931_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040260_1040413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040444_1040993_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041011_1041497_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041674_1042613_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042615_1042933_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042978_1043923_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045603_1046254_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046307_1046643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046639_1047500_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047516_1047798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047871_1048135_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048378_1049329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049627_1050365_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050800_1051124_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051158_1051719_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051839_1052715_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052727_1053675_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053776_1054070_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054096_1056154_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056168_1056669_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056742_1058449_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059312_1060365_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060417_1060807_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060815_1061448_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061547_1062564_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063395_1064403_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064399_1066043_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066039_1066927_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067067_1067541_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067530_1068553_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068549_1069977_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070914_1071931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	1075684	1137760	4107474	transposase,holin,tRNA	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1075684_1076821_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076817_1077891_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078048_1079485_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079575_1080217_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080552_1081569_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1081901_1084649_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1084715_1086137_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086400_1087117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087201_1087519_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087559_1087973_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087974_1088334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088376_1089921_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090004_1090835_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090869_1092024_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092066_1092939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093055_1095344_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096550_1097015_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097041_1097992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098359_1099136_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099180_1100038_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100059_1101076_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101210_1102251_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102445_1104527_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104762_1106256_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106486_1107281_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107501_1108860_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108856_1109699_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109717_1111604_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111545_1111797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111841_1112474_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112492_1113095_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113246_1114197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114777_1115485_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115843_1116830_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116969_1117983_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117979_1118930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1119028_1119979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1120091_1120550_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120586_1121900_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121917_1122289_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122285_1123749_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123889_1124618_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124599_1127449_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127661_1128612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128779_1129604_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129603_1130482_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131386_1132502_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132530_1133325_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133321_1135187_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135265_1135898_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135894_1136197_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136239_1137760_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	1155330	1220913	4107474	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1155330_1157127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1157126_1158095_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158164_1159010_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159077_1159632_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159678_1160629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1160727_1161360_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1161523_1163806_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163960_1166657_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166782_1167271_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169681_1172552_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172597_1173812_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174041_1175469_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1175566_1176658_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176670_1177429_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177516_1178419_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178415_1179366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1179495_1180479_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1180533_1181256_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1182734_1184090_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1184170_1186546_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1186710_1188786_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1188847_1189642_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1189749_1190712_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1190699_1191455_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1191562_1193200_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1193267_1194005_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1194107_1194683_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1194855_1195392_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1195424_1195739_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1195754_1196600_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1196638_1198018_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1198095_1198977_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1199075_1200026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1200022_1200433_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1200540_1201395_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1201387_1202350_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1202395_1203520_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1203625_1204504_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1204628_1205408_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1205561_1206983_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1207417_1209115_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1209341_1210283_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1210609_1211356_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1211363_1212290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1212411_1213329_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1213368_1214322_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1214346_1214925_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1216598_1217207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1217284_1217638_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1217721_1218711_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1218913_1219864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1219962_1220913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	1320049	1385478	4107474	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1320049_1321000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321768_1322407_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1323296_1323743_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1323824_1324526_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1324526_1325294_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1325290_1326529_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1326528_1327455_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1327557_1328673_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1328688_1329639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329992_1330574_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1330570_1331404_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1331614_1332928_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1333104_1333986_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1334005_1334857_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334909_1335998_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1336108_1337236_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1337470_1338082_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1338180_1339131_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1339352_1339730_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339877_1340375_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1340371_1340899_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1341032_1341848_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1341860_1343042_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1343089_1343983_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1344109_1344580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1344705_1345533_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1345561_1346338_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1346334_1346610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1346624_1347089_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1347100_1347802_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1347911_1348412_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1348494_1349673_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1351300_1351636_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351823_1353272_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1353329_1353674_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353780_1354320_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1354412_1355363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1355461_1356412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1356510_1356918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1357150_1357582_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1357763_1358168_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1359404_1359728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1359730_1360618_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1360650_1361076_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1361147_1361501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1361740_1362247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1362285_1363617_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1363676_1364492_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1364488_1365343_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1368405_1370949_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1372315_1374070_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1374066_1376187_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1376191_1378387_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1378383_1381725_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1384527_1385478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	1450076	1505564	4107474	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1450076_1451027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1452228_1452675_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1452667_1454143_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1454139_1454895_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1454887_1455898_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1455887_1457564_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1457876_1458209_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1458222_1458618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1458627_1458954_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1458950_1459277_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1459203_1460226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1460222_1460573_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1460620_1461049_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1461056_1462430_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1462570_1462948_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1463210_1464518_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1464578_1465409_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1465405_1465894_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1465935_1467456_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1467499_1467976_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1468779_1471377_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1471406_1472228_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1472954_1473704_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1473887_1474766_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1474863_1475580_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1475594_1476155_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1476321_1477086_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1477105_1477963_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1477959_1479159_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1479198_1480533_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1480585_1482922_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1483047_1483611_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1483619_1484711_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1484782_1485238_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1485238_1486033_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1486029_1487211_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1487197_1487803_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1487799_1488573_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1488584_1489412_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1489573_1491937_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1492004_1492724_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1492847_1493273_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1493307_1494258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1494375_1495302_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1495367_1496525_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1496505_1496973_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1497120_1498071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1498087_1498522_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1498511_1498862_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1499058_1500213_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1500209_1501382_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1501429_1502323_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1502368_1502806_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1502865_1503555_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1503564_1504515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1504613_1505564_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	1792425	1832755	4107474	transposase,tRNA	Moraxella_phage(18.18%)	36	NA	NA
WP_005012067.1|1792425_1793376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820087.1|1793494_1793845_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_010930806.1|1793841_1795299_-	cardiolipin synthetase	NA	NA	NA	NA	NA
WP_010930805.1|1795953_1798665_+	autotransporter BapA	NA	NA	NA	NA	NA
WP_003809939.1|1798923_1799196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930522.1|1799192_1800143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1800241_1802842_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1802948_1803953_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1804061_1805402_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1805442_1806471_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1806666_1807212_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1807208_1807769_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1807867_1808818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1808855_1809443_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1809460_1809844_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1811203_1812496_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1812630_1813671_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1813768_1814785_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1815052_1815688_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1815825_1816584_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1816568_1817348_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1817365_1818250_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1818246_1819026_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1819052_1819730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1820018_1820771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1820889_1822290_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1822313_1822712_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1822887_1823088_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1823226_1823955_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1824088_1825504_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1825507_1826371_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1826383_1827133_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1827375_1829331_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1829312_1829981_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1830755_1831706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1831804_1832755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	1846256	1911805	4107474	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_005012808.1|1846256_1847207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1847203_1847677_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1847838_1848777_+	membrane protein	NA	NA	NA	NA	NA
WP_077107911.1|1848778_1849987_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	2.9e-36
WP_010930541.1|1850091_1850598_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1850600_1853462_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1853451_1854417_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1854476_1856471_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1856569_1857520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1857516_1857891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1858152_1859361_+	aminotransferase	NA	NA	NA	NA	NA
WP_003812546.1|1859357_1861658_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1861710_1864323_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_033446179.1|1864682_1866590_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|1866604_1867501_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1867507_1868647_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1868646_1869468_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1871038_1871368_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1871750_1873007_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1873081_1873363_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1873404_1873725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1874031_1874235_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|1874318_1874885_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1875230_1875431_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_076879561.1|1875542_1876121_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1876299_1877610_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1877612_1878266_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1878370_1879675_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1879863_1882317_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1882440_1883391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1883618_1884842_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1884907_1885879_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1885945_1886347_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930562.1|1886366_1887164_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1887160_1887592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930563.1|1887588_1888746_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1888767_1889544_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1891756_1892425_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1892417_1893059_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|1893093_1893825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1893842_1894055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1894625_1895576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1897133_1897784_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1897912_1899115_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1899192_1901229_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1901481_1901973_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1902188_1902701_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1902718_1903930_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1903967_1904378_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1904379_1904703_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1904705_1905218_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1905347_1907210_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1907219_1907561_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1907560_1907755_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1907879_1908773_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1908769_1909720_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1909844_1910654_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1910854_1911805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	1939588	1980279	4107474	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_010930590.1|1939588_1942213_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1942199_1942454_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1942520_1943102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1943405_1943666_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1943831_1944455_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1944454_1945228_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1945224_1946433_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1946458_1946932_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1947005_1947956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1948054_1949005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1949103_1950453_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1951218_1951974_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1952066_1954949_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1955271_1955697_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1955724_1956873_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1956869_1957376_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1957391_1958678_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1958727_1960023_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1960024_1960663_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1960668_1961826_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1961852_1963208_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1963211_1964282_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1964420_1964657_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1964744_1965851_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1965816_1967121_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1967139_1968039_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1968222_1969380_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1969456_1970752_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1970865_1971405_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1971682_1971895_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1971914_1973945_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1973970_1974165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1974630_1976913_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1977322_1977622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1977906_1978320_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1978279_1979230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1979328_1980279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	1991483	2039840	4107474	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1991483_1992434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1992430_1993705_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1993808_1995002_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1994998_1995652_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1995648_1997085_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1997072_1997432_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1998246_1998387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1998404_1999355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2000400_2002266_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2002523_2004044_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2004131_2004782_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2005730_2007026_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2007047_2007932_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2008030_2008906_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2008895_2009252_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2009382_2010357_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2010486_2010666_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2010763_2011288_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2011298_2012135_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2012247_2012619_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2012615_2013167_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2013182_2014874_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2014922_2015603_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2015850_2016315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2016484_2017414_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2017426_2018074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2018147_2019965_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2020048_2020999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2021651_2022602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2022620_2022968_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2022996_2024436_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2024454_2024850_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2025024_2025633_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2025645_2026464_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2026415_2027390_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2027418_2028480_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2028476_2030693_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2030706_2031165_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2031322_2031667_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2031823_2032729_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2032815_2033829_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2035808_2036825_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2036967_2038320_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2038494_2038791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2038889_2039840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	2051336	2115705	4107474	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2051336_2052287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2052508_2053459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2053557_2054523_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2054660_2055560_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2058154_2059642_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2059652_2060849_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2060921_2062241_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2062237_2063113_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2063143_2064292_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2064309_2064624_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2064645_2065368_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2065367_2066186_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2066190_2066718_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2066723_2067980_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2068338_2069478_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2069555_2070428_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2071298_2072249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2072208_2072844_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2073203_2074526_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2074844_2075666_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2077090_2077663_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2077702_2079532_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2079494_2080553_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2080590_2081052_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2081136_2081883_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2083373_2086604_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2086670_2088002_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2088254_2088629_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2088731_2089910_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2089920_2090511_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2090621_2091428_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2091453_2092248_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2093248_2094223_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2094381_2094894_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2095050_2096022_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2097766_2098573_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2098569_2099871_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2099821_2100586_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2100699_2101470_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2101554_2102742_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2102814_2103189_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2103289_2104552_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2104548_2105406_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2105578_2106580_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2107031_2107982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2109545_2110697_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2111065_2111302_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2111365_2111533_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2111646_2113542_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2113705_2114656_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2114754_2115705_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	2302173	2363521	4107474	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2302173_2303124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2303240_2303960_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2304132_2305119_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2305119_2305602_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2305605_2306889_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2306885_2307824_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2307820_2309530_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2309539_2310787_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2312397_2313687_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2314824_2315598_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2316259_2317003_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2317077_2317818_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2318013_2318850_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2318900_2319671_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2319720_2320773_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2320769_2321396_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2321392_2322427_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2322605_2323622_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2323720_2324671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2327411_2328701_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2328819_2329257_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2329300_2330509_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2330655_2331120_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2331143_2332094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2333078_2333852_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2333848_2334847_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2334931_2335708_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2335863_2337468_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2337848_2338973_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2339099_2339723_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2339719_2341621_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2341669_2342464_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2342476_2343478_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2343474_2343924_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2343973_2344822_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2344919_2345462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2345505_2346456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2346611_2346938_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2346934_2347216_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2347215_2347695_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2347691_2349320_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2349316_2349661_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2349660_2352594_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2353752_2354703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2354801_2355098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2355204_2356122_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2356126_2356840_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2356853_2357825_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2359574_2359925_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2359928_2361116_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2361554_2362277_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2362570_2363521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	2384312	2455466	4107474	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2384312_2385263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2385815_2387441_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2387490_2388525_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2388527_2389874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2389870_2391385_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2391375_2392386_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2392859_2393801_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2393809_2394778_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2396317_2397286_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2397463_2398453_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2398499_2399258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2399447_2400185_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2400283_2401234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2401418_2402201_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2402194_2402896_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2403135_2403738_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2405064_2406015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2406011_2407568_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2407560_2408334_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2408392_2409343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2409424_2410600_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2410613_2412671_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2412667_2413693_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2413704_2414994_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2415016_2416114_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2416110_2417001_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2416997_2419082_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2419113_2420283_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2420324_2421065_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2421064_2421835_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2422690_2423476_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2423502_2425587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2425754_2427710_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2428033_2428534_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2428632_2430159_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2430296_2431184_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2431198_2432152_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2432203_2434294_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2434309_2434696_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2437389_2438193_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2439486_2440389_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2440453_2441230_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2441551_2442601_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2442724_2444395_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2444399_2445194_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2445292_2446243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2446262_2447168_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2447245_2447944_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2448103_2449048_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2449057_2450545_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2450544_2451612_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2451675_2453088_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2453273_2454494_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2454515_2455466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	2539666	2590847	4107474	transposase,tRNA	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2539666_2540617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2540715_2541486_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2541482_2542154_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2542150_2542792_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2542804_2543725_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2543885_2545046_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2545087_2546038_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2546636_2546861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2547025_2548720_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2548841_2549111_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2549226_2549625_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2549635_2550592_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2550728_2551274_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2551294_2553244_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2553631_2554408_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2554413_2554806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2555227_2556178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2556174_2557272_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2557303_2558254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077107909.1|2560035_2561286_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561297_2562071_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562097_2563048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563146_2563929_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2564017_2565244_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565969_2567355_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567373_2567979_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567975_2569832_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569828_2570629_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570643_2571837_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571904_2572879_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2573001_2574225_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574335_2576540_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576834_2577494_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577501_2577708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578046_2578802_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2579072_2579588_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579860_2580178_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2580365_2580602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580892_2582248_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582294_2583635_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583736_2584369_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2584368_2586738_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586770_2587730_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587716_2588403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2588399_2588732_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588847_2589798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589896_2590847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	2689142	2729811	4107474	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689142_2690093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690203_2690386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690485_2691082_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691265_2692357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692856_2693267_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2693325_2693655_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693672_2696090_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696102_2697125_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697199_2697559_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697574_2697772_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698107_2699058_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699252_2699702_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699698_2700649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700759_2702208_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2702322_2702568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702707_2703658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703902_2704616_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704738_2704966_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705260_2705899_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2706007_2707042_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707038_2707989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708404_2708929_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708932_2709202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709400_2710462_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710545_2712180_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712181_2712985_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2713013_2713973_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713976_2715491_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715527_2716532_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716963_2717434_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717469_2718081_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718111_2718735_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718815_2720348_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2720382_2721600_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721667_2722699_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722695_2723865_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723858_2724539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724700_2725543_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725705_2726677_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726848_2727727_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727749_2728820_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728860_2729811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	2785276	2858146	4107474	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785276_2785693_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785803_2786436_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786464_2786908_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786929_2788021_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2788075_2788876_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2789011_2789632_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789771_2790245_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791384_2792335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792331_2799993_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800233_2804280_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804592_2805174_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805170_2806469_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806548_2807577_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807837_2808788_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808784_2809735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810051_2810657_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810710_2812024_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812098_2812569_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812568_2813357_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813367_2815020_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_005012067.1|2815107_2816058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817219_2817726_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817722_2818487_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818502_2818787_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818851_2819841_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2820012_2820942_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820913_2821600_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821633_2822179_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822223_2823489_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823485_2824388_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825569_2826514_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826608_2828126_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828167_2829796_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829903_2830785_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833897_2834272_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834296_2834635_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834678_2836313_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836351_2837698_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837805_2839227_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839296_2839881_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839983_2840934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841068_2842175_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842185_2843283_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843427_2844633_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844639_2845161_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845157_2845640_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845645_2845897_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845877_2846363_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846498_2849960_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849977_2850862_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850871_2851303_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851549_2852053_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852130_2853531_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853605_2854481_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854477_2855485_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855952_2856258_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856348_2856939_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857129_2858146_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	2861289	2928100	4107474	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2861289_2862240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862338_2863289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863285_2864080_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864111_2864816_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864890_2865691_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865687_2866095_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866091_2866733_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866725_2868726_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869986_2871318_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871314_2872265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873971_2874238_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874945_2875284_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879837_2880440_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880536_2881826_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881883_2882615_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882611_2883415_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883411_2884500_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884496_2885426_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885574_2886720_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886741_2887692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2888022_2891844_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2892000_2892669_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892673_2894347_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894365_2895685_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895689_2898005_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898060_2900229_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900225_2905406_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905504_2905819_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906046_2906292_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906386_2906905_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2907004_2908210_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908325_2909723_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909839_2910418_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910490_2911882_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912049_2913000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913280_2913901_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913897_2914311_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914307_2915351_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915406_2915595_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915604_2916369_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916459_2917116_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917207_2917966_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917991_2919593_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919793_2920798_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920898_2921162_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921279_2922056_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922646_2923597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925980_2927093_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927149_2928100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	2958486	3002177	4107474	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2958486_2959437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959557_2960454_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962731_2964957_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965121_2966210_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966166_2966820_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966867_2967665_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968196_2969147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969227_2970376_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970432_2971383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971481_2971787_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971815_2972250_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972251_2973496_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973492_2974203_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974217_2975129_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975491_2975896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975892_2976351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976357_2977266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977262_2978129_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978115_2978943_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978953_2980081_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981158_2982397_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982438_2983701_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983707_2984460_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984511_2984697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984972_2985437_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985468_2986128_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986272_2988381_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988377_2989328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989431_2990052_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990155_2990896_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992030_2993155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993200_2993569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993810_2994761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995796_2996339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996724_2997675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997671_2998580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998706_2999543_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000055_3001165_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3001226_3002177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	3383172	3436913	4107474	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3383172_3384123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384527_3385172_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385196_3385781_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385881_3386499_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386501_3388217_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388213_3388522_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388538_3389156_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389200_3389503_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389603_3390458_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390645_3390870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391039_3391312_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391729_3392137_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392506_3393301_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393401_3394637_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394705_3395722_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395733_3397110_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397106_3398303_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398299_3399838_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399834_3401094_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403034_3403985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404751_3405846_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405838_3407173_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407126_3407810_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407835_3408999_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3408995_3409997_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409996_3410869_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410865_3411615_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411611_3412403_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412399_3413539_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413814_3414600_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414633_3415416_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415419_3415809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416948_3417812_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417847_3418936_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418932_3419883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420236_3423215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424141_3425020_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426968_3427919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427915_3428383_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428425_3429196_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429216_3430017_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430027_3431437_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431531_3432317_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432556_3433573_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433680_3434073_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434210_3434891_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434895_3435867_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435962_3436913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	3443068	3502368	4107474	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3443068_3444832_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444943_3445822_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445934_3446750_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446753_3447005_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447089_3448106_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448436_3448658_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3451018_3451936_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452433_3453642_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453721_3455293_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455410_3456346_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456534_3457479_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458046_3463764_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463769_3464897_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464952_3465579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465850_3466867_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466962_3467673_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467669_3468659_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468754_3470386_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470388_3471126_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471281_3472154_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472503_3473643_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473639_3474299_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474370_3475003_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475032_3475551_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475561_3476671_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476717_3477572_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477573_3478476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479698_3480649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482405_3483395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483570_3484359_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484355_3485387_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485405_3485969_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3486024_3487545_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487808_3488513_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488520_3489249_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489363_3489738_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489780_3491070_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491066_3492236_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492232_3493072_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493131_3494067_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494079_3495030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495128_3496091_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496122_3496482_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496606_3497509_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497510_3499283_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499317_3500094_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501417_3502368_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011765	Bordetella pertussis strain J098 chromosome, complete genome	4107474	3517306	3575379	4107474	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517306_3518257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518385_3519519_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519562_3520468_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520470_3522171_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522167_3523088_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523095_3524073_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524131_3525166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3527140_3527377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527503_3528367_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528455_3529277_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529356_3530094_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530090_3531083_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3531235_3531859_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531903_3533052_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535375_3536326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536666_3537617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537715_3538666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538962_3539460_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539502_3541278_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541285_3542152_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542158_3542893_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544062_3544857_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545146_3545737_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545770_3547099_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547173_3548319_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548430_3549429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549391_3549826_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551342_3552227_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552223_3553429_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553425_3554286_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554398_3556189_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3556229_3556874_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556895_3557204_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557369_3558656_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560089_3561040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562991_3564206_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564311_3565301_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565297_3565906_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565918_3566548_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566544_3567165_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567196_3567988_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568839_3569295_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569313_3570240_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570293_3571580_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572510_3573383_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573379_3574330_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574428_3575379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
