The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	27282	78584	4106381	transposase,tRNA	Synechococcus_phage(25.0%)	48	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60473_60887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69084_70035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	107435	175257	4106381	transposase,tRNA	Bacillus_phage(22.22%)	55	NA	NA
WP_010929626.1|107435_108386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109285_110479_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110560_111190_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111251_111935_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111944_113627_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113914_114262_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114352_114670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114952_115969_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116044_116845_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116841_117717_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117727_119020_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119062_120103_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120208_121030_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121130_122081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122179_123085_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123081_123915_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124751_125762_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125758_126148_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127041_128295_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128385_130086_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130512_131160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131158_132598_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132690_132993_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133020_133899_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135165_136116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136534_138043_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138789_142752_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142804_143587_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143674_144898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144881_145814_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145819_146632_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147943_148915_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815135.1|149033_149816_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150582_151563_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151559_152288_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152312_152744_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152845_153721_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153772_154972_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155076_155538_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155643_157041_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157037_157715_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157770_159081_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159092_159791_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159954_160731_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160896_161919_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162147_162783_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929658.1|162779_164342_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164900_165851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815889.1|168172_168802_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169084_170515_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170548_171178_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171226_172834_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172858_173542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173623_174100_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174306_175257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	178639	236276	4106381	protease,transposase,tRNA	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|178639_180718_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180967_181240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181341_182427_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182430_184335_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184331_188006_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188066_188630_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188637_189060_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189087_189507_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189535_190009_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190108_190606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190760_193031_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193079_194312_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194410_195361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195463_196099_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196095_196989_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197383_198484_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198565_198940_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198999_201864_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202008_202749_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202818_204030_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204058_205027_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205640_206591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206747_207071_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207175_208216_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208221_209001_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209046_209343_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209368_209644_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209700_210345_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210344_211031_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211160_212012_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212062_212788_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212819_214169_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214280_215213_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215670_218466_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219059_222002_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222073_222793_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222831_223380_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223534_224434_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224458_225409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225627_226323_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226339_227752_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227864_229295_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229336_231250_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231568_232135_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232225_233227_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233341_234292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234378_235329_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235325_236276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	250690	303026	4106381	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_003814337.1|250690_251632_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251628_253518_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253604_254243_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254385_255771_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255701_256238_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256389_257781_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257797_258778_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258913_259897_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259961_260861_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260967_262722_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262729_263854_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263867_264848_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265578_266529_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267088_267634_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267717_269337_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269352_270507_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270520_270646_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270642_272394_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272390_274070_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274132_274681_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275823_276102_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277145_278096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278113_278260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278373_278535_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278542_278683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279201_279651_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279660_280272_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280430_281285_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281304_282687_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282751_283393_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283532_283991_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284015_284792_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284845_285982_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285978_286929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287027_287654_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287676_288603_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288611_290198_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290194_291199_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291398_292259_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292290_293292_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293362_294172_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294249_296109_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296237_297440_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297553_298435_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299937_300498_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300557_301508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301699_301987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302075_303026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	390862	448371	4106381	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390862_391813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391949_392867_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392863_393112_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393108_394314_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394386_395382_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395404_396625_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396621_397266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398996_399806_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400110_401064_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401162_402146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402072_402774_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402822_403593_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403589_404768_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404935_406642_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406638_407535_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407575_409165_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409214_410207_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410275_410875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411335_412316_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412391_413342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413430_414345_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414341_415001_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415090_416014_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416019_416475_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416471_417575_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417533_417803_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417762_419382_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419378_420437_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420566_421061_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421153_422131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422326_423532_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423528_425040_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425055_426369_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426559_426739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427148_427883_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430327_431278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431409_431808_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432218_432689_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432777_433122_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433221_434622_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436410_436929_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437039_437795_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437990_439223_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439215_440001_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440067_441039_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441049_442027_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442152_443325_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443351_444380_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444445_445639_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447420_448371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	589376	650565	4106381	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589376_590327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590823_591693_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591689_592511_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592709_593201_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593219_594293_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594339_595443_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595518_596139_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596159_596669_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596723_596975_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597038_598172_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598179_598566_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598562_601082_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601510_601849_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601845_602352_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602413_603214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603324_604266_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604359_605895_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607574_609425_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609428_610262_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610261_611203_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611454_612426_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612567_614856_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615161_616070_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616124_617090_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617164_618826_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618897_619608_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619574_619739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619756_620707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621405_621789_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621846_622449_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622466_622868_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|623001_623895_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623891_624473_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625267_626002_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626042_627092_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627239_627818_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628204_629182_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629275_633670_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633870_634719_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634877_635690_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635745_636696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636794_637595_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637656_638040_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638051_639485_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639691_640021_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640023_640773_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640955_641876_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641922_642135_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642157_642580_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642596_643697_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643793_645311_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645386_646226_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646247_647129_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647210_648305_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648598_649549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649623_650565_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	655889	702080	4106381	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655889_656915_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656955_657195_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657264_658854_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658853_659402_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659482_660055_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660073_660985_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661058_662027_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662149_663223_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663227_665048_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665124_666075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666163_666499_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666632_667283_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667304_668723_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668792_669548_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669516_670275_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670285_671167_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671183_671891_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671893_672652_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672861_674604_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674596_675121_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675160_675955_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676122_677196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677294_678245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678496_678703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678774_679386_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679940_680192_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680184_680874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680891_681113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681130_682081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682720_683206_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683192_684470_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684472_685891_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685919_686975_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686980_687223_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687345_687948_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688376_689327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690001_690253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690315_690798_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690799_691000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690999_691395_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691391_691790_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691786_692209_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692216_692717_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692971_693490_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693499_693829_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693846_694137_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694162_696775_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696784_697144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697211_697745_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697741_698131_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698123_702080_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	708246	762176	4106381	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708246_709977_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710029_710458_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710460_711141_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711140_711599_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711635_712610_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712626_713943_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713974_714472_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714558_715248_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715247_716297_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716293_717088_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717256_717607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717582_718140_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719269_720220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722357_723587_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723589_725032_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725136_726282_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726313_727111_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727135_728695_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728691_731064_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731173_732277_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732276_732969_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733112_733814_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733798_734176_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734907_735858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736017_736890_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737230_737449_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737488_738868_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738909_740307_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740346_741999_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742002_742887_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742886_743828_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743906_745526_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745692_746508_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746575_747145_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747145_748096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748750_749848_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749881_751147_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751304_752255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752498_753089_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753104_755549_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755668_756640_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756771_757296_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757255_758206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758427_760623_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760695_761124_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761225_762176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	853054	902318	4106381	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|853054_854005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854022_854577_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854578_855013_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855009_855444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855427_856231_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856247_857063_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857059_857875_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858021_858723_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858750_860709_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860791_861742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861962_862631_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862754_863861_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863873_866987_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866983_868477_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868491_869163_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869206_869701_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869841_870489_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870592_872641_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872637_874650_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874675_876010_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876118_877111_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877177_879262_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879286_880258_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880386_881418_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881421_882573_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882743_883667_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883744_884569_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884765_885782_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885978_886962_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888560_889949_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889979_890969_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891079_892312_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892593_893394_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893416_895648_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896435_896882_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896903_897650_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897793_898771_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899404_900016_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900009_901227_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901367_902318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	911930	976870	4106381	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|911930_912881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912877_914710_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915108_915768_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915861_916008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916116_916284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916295_916976_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917257_917974_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917988_919290_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921434_924323_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924546_925899_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925927_926449_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926445_927900_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927934_928183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928288_929164_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929189_930245_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930257_931049_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931081_932452_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933628_934579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934631_934853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935012_935225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935344_936463_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936968_937220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937332_938283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938279_938663_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938717_940532_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940681_941509_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941554_942535_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942531_942744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942740_943922_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944085_944820_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944821_947434_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947569_949483_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950098_950509_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950606_951692_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951790_952741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952737_953712_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953836_954748_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955024_955417_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955546_956497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956526_956709_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957481_958663_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958878_959556_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|959552_960278_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|960403_960985_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961355_964037_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|964036_965170_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965162_966248_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966334_967234_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967230_968559_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968573_969245_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|969432_971148_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971149_971509_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971700_972015_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972057_973278_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973274_974216_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974212_975202_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975236_975821_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975919_976870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	996270	1059421	4106381	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|996270_997221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997325_998375_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998512_999529_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001037_1001610_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001669_1002401_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002452_1003370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004177_1007357_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007353_1008736_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008805_1009057_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009202_1009817_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1010003_1012118_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012193_1013045_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013041_1013668_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013664_1015419_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015711_1018417_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018429_1020091_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020103_1021894_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022115_1023291_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023333_1024284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024382_1025123_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025317_1027354_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027371_1028382_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028499_1029693_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029722_1030496_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030492_1031683_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031708_1032647_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032643_1034992_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035146_1035788_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035891_1037025_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037117_1037270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037301_1037850_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037868_1038354_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038531_1039470_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039472_1039790_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039835_1040780_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042460_1043111_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043164_1043500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043496_1044357_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044373_1044655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044728_1044992_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045235_1046186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046484_1047222_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047657_1047981_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048015_1048576_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048696_1049572_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049584_1050532_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050633_1050927_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050953_1053011_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053025_1053526_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053599_1055306_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056169_1057222_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057274_1057664_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057672_1058305_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058404_1059421_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1065405	1125468	4106381	holin,protease,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1065405_1066833_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067770_1068787_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069119_1070055_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070104_1071985_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072051_1072396_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072540_1073677_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073673_1074747_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074904_1076341_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076431_1077073_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077408_1078425_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080467_1081418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082620_1084042_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084305_1085022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085106_1085424_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085464_1085878_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085879_1086239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086281_1087826_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087909_1088740_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088774_1089929_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089971_1090844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090960_1093249_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094455_1094920_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094946_1095897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095914_1096052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096264_1097041_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097085_1097943_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097964_1098981_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099115_1100156_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100350_1102432_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102667_1104161_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104391_1105186_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105406_1106765_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106761_1107604_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107622_1109509_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109450_1109702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109746_1110379_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110397_1111000_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111151_1112102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112682_1113390_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113748_1114735_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114874_1115888_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115884_1116835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116852_1116993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116947_1117406_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117442_1118756_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118773_1119145_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119141_1120605_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120745_1121474_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121455_1124305_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124517_1125468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1156534	1218705	4106381	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1156534_1157485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157583_1158207_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158380_1160663_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160817_1163514_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163639_1164128_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166538_1169409_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169454_1170669_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170898_1172326_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172423_1173515_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173527_1174286_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174373_1175276_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175272_1176223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176352_1177336_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177390_1178113_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179591_1180947_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181027_1183403_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183567_1185643_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185704_1186505_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186606_1187569_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187556_1188312_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188419_1190057_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190124_1190862_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190964_1191540_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191712_1192249_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192251_1192596_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192611_1193457_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193495_1194875_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194952_1195834_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195932_1196883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196879_1197290_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197397_1198252_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198244_1199207_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199252_1200377_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200482_1201361_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201485_1202265_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202418_1203840_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204274_1205972_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206198_1207140_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207466_1208213_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208220_1209147_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209268_1210186_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210225_1211179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211203_1211782_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213455_1214064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214141_1214495_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214578_1215568_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1215564_1215753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215770_1216721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216807_1217758_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217754_1218705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1269631	1326842	4106381	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269631_1270582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274328_1274940_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275162_1276623_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276719_1278312_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278665_1278923_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278924_1280265_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280360_1281050_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281062_1282493_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284217_1285039_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285049_1286621_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286649_1287627_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287653_1288457_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288453_1289248_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289255_1290491_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290483_1290918_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291667_1292618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293239_1294967_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295078_1296437_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296493_1296712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296729_1297680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297720_1298791_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298813_1299692_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299863_1300835_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300997_1301840_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302001_1302682_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302675_1303845_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303841_1304873_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304916_1306158_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306192_1307725_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307805_1308429_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308459_1309071_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309106_1309577_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310008_1311013_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311049_1312564_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312567_1313527_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313555_1314359_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314360_1315995_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316078_1317140_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317338_1317608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317611_1318136_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318551_1319502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319498_1320533_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320641_1321280_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321574_1321802_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321924_1322638_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322882_1323833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323936_1324218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324332_1325781_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325891_1326842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1417075	1469228	4106381	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1417075_1418026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418043_1418196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418192_1418546_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418558_1418921_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418962_1419388_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419590_1420847_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421045_1422026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422175_1423417_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423515_1424466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424474_1425170_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427991_1428591_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428601_1430767_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430790_1432575_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432574_1432664_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433358_1433631_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433630_1435697_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435693_1436644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436742_1437693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437808_1438141_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438137_1438824_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1438810_1439770_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1439811_1442172_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442171_1442804_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442905_1444246_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444292_1445648_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1445773_1446418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446362_1446680_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446952_1447468_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447561_1447723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447738_1448494_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448832_1449039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449046_1449706_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450000_1452205_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452315_1453539_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453661_1454636_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454703_1455897_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455911_1456712_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456708_1458565_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458561_1459167_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459185_1460571_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461296_1462523_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1462611_1463394_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463492_1464443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464469_1465243_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465254_1466496_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468277_1469228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1514202	1582287	4106381	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1514202_1514691_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514808_1515387_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515492_1515861_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515959_1516910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516916_1518029_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518715_1519918_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519953_1520100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520121_1522782_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522794_1526199_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526866_1529092_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529138_1529465_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529515_1530124_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530222_1531173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531242_1532007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532003_1532603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532706_1533558_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533617_1534244_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534240_1535191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535289_1536402_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536391_1537393_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537498_1539010_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539006_1540311_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540422_1540983_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541250_1541805_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542260_1542476_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542730_1545328_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545324_1546512_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1547169_1547784_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547872_1549000_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549011_1549917_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550809_1551760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551941_1552694_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552762_1553422_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553418_1554147_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554159_1556439_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556463_1556667_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556708_1557341_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557476_1558394_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558390_1559104_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559341_1560112_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560116_1560716_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560960_1562451_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562509_1562794_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1562931_1563087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563359_1564286_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564422_1565163_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565329_1566706_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566887_1567793_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569444_1571247_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1571373_1572015_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572113_1573064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573085_1574306_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574491_1575904_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575967_1577035_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577034_1578522_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578531_1579476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579635_1580334_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580411_1581317_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581336_1582287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1618236	1673827	4106381	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618236_1619187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619245_1620019_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620011_1621568_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621564_1622515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623841_1624444_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624683_1625385_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625378_1626161_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626345_1627296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627394_1628132_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628321_1629080_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629126_1630116_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630293_1631262_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632801_1633770_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633778_1634720_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635193_1636204_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636194_1637709_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637705_1639052_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1639054_1640089_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640138_1641764_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642316_1643267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643371_1644319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644372_1646187_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646179_1646854_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646983_1650058_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650071_1650371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650685_1651309_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1651552_1652422_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652399_1653344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653429_1654356_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654468_1655248_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655238_1656435_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656465_1657416_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657637_1658327_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658391_1659147_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659198_1660191_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660200_1661154_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661269_1662232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663633_1664062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664058_1665009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1665302_1666040_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666463_1667651_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667654_1668035_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669754_1670726_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670739_1671453_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671457_1672375_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672481_1672778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672876_1673827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1831594	1890864	4106381	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831594_1832545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832669_1833479_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1833679_1834630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835903_1837121_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838177_1839080_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839156_1840029_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840159_1840528_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840585_1841632_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841827_1843084_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843088_1844426_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844575_1845532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845634_1846567_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846682_1847003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846995_1847355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847402_1848977_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849029_1849974_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849991_1850822_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850814_1852449_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852445_1853801_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854707_1856285_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856288_1857563_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857660_1858035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859750_1860884_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860921_1861527_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861523_1862342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862413_1865038_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865024_1865279_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865345_1865927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866230_1866491_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866656_1867280_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867279_1868053_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868049_1869258_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869283_1869757_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869830_1870781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870879_1871830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871928_1873278_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874043_1874799_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874891_1877774_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878096_1878522_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878549_1879698_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879694_1880201_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880207_1881503_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1881561_1882848_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882849_1883488_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883490_1884651_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884677_1886033_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886036_1887107_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887245_1887482_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887569_1888676_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888641_1889946_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889964_1890864_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1901104	1945427	4106381	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901104_1902055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902153_1903104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903303_1904389_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904404_1905166_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1905162_1906122_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1906184_1906685_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906717_1907461_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907556_1907796_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907809_1907962_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908047_1909538_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909629_1910568_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910564_1910741_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910743_1911406_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913027_1913171_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913167_1914142_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914036_1914291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914308_1915259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915255_1916530_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916633_1917827_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917823_1918477_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918473_1919910_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919897_1920257_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921071_1921212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921229_1922180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923225_1925091_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925348_1926869_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926956_1927607_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1928555_1929851_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929872_1930757_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930855_1931731_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931720_1932077_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932207_1933182_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933311_1933491_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933588_1934113_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934123_1934960_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935072_1935444_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935440_1935992_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936007_1937699_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937747_1938428_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938675_1939140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939309_1940239_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940251_1940899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940972_1942790_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942873_1943824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944476_1945427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	1975200	2039569	4106381	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975200_1976151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976372_1977323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977421_1978387_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978524_1979424_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982018_1983506_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983516_1984713_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984785_1986105_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986101_1986977_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987007_1988156_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988173_1988488_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988509_1989232_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989231_1990050_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990054_1990582_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990587_1991844_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992202_1993342_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993419_1994292_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995162_1996113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996072_1996708_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997067_1998390_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998708_1999530_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000954_2001527_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001566_2003396_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003358_2004417_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004454_2004916_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005000_2005747_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007237_2010468_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010534_2011866_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012118_2012493_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012595_2013774_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013784_2014375_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014485_2015292_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015317_2016112_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017112_2018087_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018245_2018758_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018914_2019886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021630_2022437_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2022433_2023735_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2023685_2024450_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024563_2025334_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025418_2026606_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026678_2027053_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2027153_2028416_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028412_2029270_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029442_2030444_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030895_2031846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033361_2034561_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034929_2035166_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035229_2035397_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2035510_2037316_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2037569_2038520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038618_2039569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	2171098	2220751	4106381	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171098_2172049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172147_2174142_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174201_2175167_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175156_2178018_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178020_2178527_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178631_2179840_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179841_2180780_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180941_2181415_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181411_2182362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182472_2182913_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183041_2184271_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184309_2185131_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185184_2186336_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186427_2186916_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189466_2192016_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192086_2194660_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194925_2195126_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195157_2195319_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195376_2195715_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195863_2196814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197588_2198257_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198238_2200254_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2200436_2201186_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201198_2202062_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202065_2203481_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203614_2204343_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204481_2204682_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204857_2205256_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205279_2206680_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206798_2207551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2207839_2208439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208543_2209323_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209319_2210204_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210221_2211001_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210985_2211744_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211869_2212517_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212784_2213801_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213898_2214939_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215073_2216366_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217725_2218109_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218126_2218714_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218751_2219702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219800_2220751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	2477058	2535301	4106381	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2477058_2478009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478488_2479145_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930386.1|2480828_2481458_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481669_2482764_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482908_2483721_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2483724_2485428_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2485478_2486609_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486795_2487872_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487953_2488604_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488618_2490022_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490305_2491124_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2491120_2491825_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492724_2493840_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493873_2494248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494270_2495428_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495440_2495674_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496308_2499278_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499292_2499502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499653_2500283_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2500279_2502370_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502393_2503074_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503070_2503631_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503637_2504735_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504887_2505481_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505477_2506770_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506783_2507326_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507335_2508172_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508205_2509267_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509308_2510361_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510376_2510679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510820_2511771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511788_2511953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511949_2513644_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513640_2514726_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514773_2515673_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515683_2516328_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517349_2520592_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520602_2521757_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521983_2522946_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523044_2523995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524093_2525044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525053_2525743_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525802_2526240_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526285_2527179_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527226_2528399_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528395_2529550_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2529746_2530097_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530086_2530521_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530537_2531488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531635_2532103_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532083_2533241_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533306_2534233_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534350_2535301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	2577579	2644079	4106381	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577579_2578530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578899_2579472_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579474_2580485_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580477_2580978_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580988_2581330_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581341_2582133_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582149_2582419_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582441_2583230_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583276_2584293_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584509_2585952_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586130_2587750_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587870_2589691_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589769_2591302_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591335_2592982_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593051_2594074_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594091_2595225_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595227_2595917_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595916_2596702_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596745_2597510_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597548_2598970_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599035_2599740_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599787_2600207_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600219_2600627_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600810_2601521_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601647_2601938_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601955_2602438_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606943_2608098_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608403_2609420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609666_2610455_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610521_2611202_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611198_2611969_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612067_2613018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613073_2613991_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614001_2615180_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615199_2616195_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617783_2618392_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618379_2619420_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619437_2620400_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620396_2621590_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621586_2622384_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622409_2623396_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623414_2625454_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625655_2626336_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626349_2627261_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627257_2627836_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627974_2628880_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628887_2632307_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632294_2634895_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635850_2636483_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636876_2637635_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637631_2638834_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639021_2639972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640879_2642025_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642011_2642767_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642883_2643063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643128_2644079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	2672194	2709606	4106381	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672194_2673145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673243_2674194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674286_2674826_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674932_2675277_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675334_2676783_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676970_2677306_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678933_2680112_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680194_2680695_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680804_2681506_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2681517_2681982_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2681996_2682272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682268_2683045_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683073_2683901_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684026_2684497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684623_2685517_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685564_2686746_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686758_2687574_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2687707_2688235_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688231_2688729_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688876_2689254_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689475_2690426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690524_2691136_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691370_2692498_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692608_2693697_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693749_2694601_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694620_2695502_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695678_2696992_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697202_2698036_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698032_2698614_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698967_2699918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699933_2701049_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701151_2702078_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702077_2703316_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703312_2704080_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704080_2704782_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704863_2705310_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2706199_2706838_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707606_2708557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708655_2709606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	2808733	2863250	4106381	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808733_2809684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810012_2810618_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810671_2811985_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812059_2812530_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812529_2813318_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813328_2814981_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815068_2816019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817180_2817687_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817683_2818448_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818463_2818748_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818812_2819802_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819973_2820903_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820874_2821561_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821594_2822140_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822184_2823450_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823446_2824349_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825530_2826475_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826569_2828087_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828128_2829757_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829864_2830746_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833858_2834233_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834257_2834596_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834639_2836274_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836312_2837659_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837766_2839188_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839257_2839842_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839944_2840895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841029_2842136_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842146_2843244_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843388_2844594_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844600_2845122_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845118_2845610_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845606_2845858_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845838_2846324_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846459_2849921_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849938_2850823_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850832_2851264_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851510_2852014_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852091_2853492_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853566_2854442_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854438_2855446_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855913_2856219_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856309_2856900_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857090_2858107_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858298_2860635_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860717_2861152_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861250_2862201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862299_2863250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	2871275	2928060	4106381	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871275_2872226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873932_2874199_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874906_2875245_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879797_2880400_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880496_2881786_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881843_2882575_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882571_2883375_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883371_2884460_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884456_2885386_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885534_2886680_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886701_2887652_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887669_2887828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887982_2891804_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891960_2892629_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892633_2894307_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894325_2895645_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895649_2897965_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898020_2900189_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900185_2905375_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905464_2905779_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906006_2906252_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906346_2906865_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906964_2908170_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908285_2909683_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909799_2910378_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910450_2911842_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912009_2912960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913240_2913861_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913857_2914271_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914267_2915311_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915366_2915555_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915564_2916329_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916419_2917076_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917167_2917926_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917951_2919553_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919753_2920758_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920858_2921122_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921239_2922016_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922606_2923557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925940_2927053_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927109_2928060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	2958446	3002137	4106381	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958446_2959397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959414_2959564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959517_2960414_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962691_2964917_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965081_2966170_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966126_2966780_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966827_2967625_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968156_2969107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969181_2970336_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970392_2971343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971441_2971747_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971775_2972210_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972211_2973456_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973452_2974163_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974177_2975089_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975451_2975856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975852_2976311_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976317_2977226_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977222_2978089_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978075_2978903_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978913_2980041_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981118_2982357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982398_2983661_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983667_2984420_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984471_2984657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984932_2985397_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985428_2986088_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986232_2988341_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988337_2989288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989391_2990012_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990103_2990856_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991990_2993115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993160_2993529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993770_2994721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995756_2996299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996496_2996667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996684_2997635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997631_2998597_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998666_2999503_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000015_3001125_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001186_3002137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	3382081	3435822	4106381	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382081_3383032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383436_3384081_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384105_3384690_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384790_3385408_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385410_3387126_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387122_3387431_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387447_3388065_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388109_3388412_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388512_3389367_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389554_3389779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389948_3390221_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390638_3391046_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391415_3392210_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392310_3393546_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393614_3394631_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394642_3396019_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396015_3397212_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397208_3398747_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398743_3400003_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401943_3402894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403660_3404755_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404747_3406082_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406035_3406719_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406744_3407908_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407904_3408906_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408905_3409778_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409774_3410524_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410520_3411312_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411308_3412448_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412723_3413509_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413542_3414325_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414328_3414718_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415857_3416721_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416756_3417845_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417841_3418792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419145_3422124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423050_3423929_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425877_3426828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426824_3427292_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427334_3428105_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428125_3428926_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428936_3430346_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430440_3431226_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431465_3432482_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432589_3432982_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433119_3433800_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433804_3434776_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434871_3435822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	3441977	3501275	4106381	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3441977_3443741_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443852_3444731_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444843_3445659_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445662_3445914_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3445998_3447015_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447345_3447567_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449927_3450845_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451342_3452551_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452630_3454202_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454319_3455255_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455443_3456388_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456955_3462673_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462678_3463806_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463861_3464488_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3464759_3465776_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465871_3466582_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466578_3467568_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467663_3469295_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469297_3470035_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470190_3471063_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471331_3472552_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472548_3473208_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473279_3473912_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473941_3474460_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474470_3475580_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475626_3476481_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476482_3477385_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478607_3479558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481312_3482302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482298_3482457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482477_3483266_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483262_3484294_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484312_3484876_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484931_3486452_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486715_3487420_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487427_3488165_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488270_3488645_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488687_3489977_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489973_3491143_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491139_3491979_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492038_3492974_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492986_3493937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494035_3494998_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495029_3495389_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495513_3496416_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496417_3498190_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498224_3499001_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500324_3501275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	3516213	3574286	4106381	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516213_3517164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517292_3518426_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518469_3519375_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519377_3521078_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521074_3521995_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522002_3522980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523038_3524073_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526047_3526284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526410_3527274_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527362_3528184_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528263_3529001_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3528997_3529990_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530103_3530766_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530810_3531959_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534282_3535233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535573_3536524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536622_3537573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537869_3538367_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538409_3540185_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540192_3541059_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541065_3541800_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542969_3543764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544053_3544644_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544677_3546006_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546080_3547226_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547337_3548336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548298_3548733_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550249_3551134_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551130_3552336_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552332_3553193_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553305_3555096_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555136_3555802_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555802_3556111_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556276_3557563_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3558996_3559947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561898_3563113_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563218_3564208_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564204_3564813_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564825_3565455_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565451_3566072_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566103_3566895_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567746_3568202_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568220_3569147_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569200_3570487_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571417_3572290_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572286_3573237_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573335_3574286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011764	Bordetella pertussis strain J091 chromosome, complete genome	4106381	4028552	4081984	4106381	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028552_4029503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029672_4030899_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031098_4031965_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031957_4032920_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033020_4033971_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034069_4035020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035118_4036069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036065_4037559_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037555_4040663_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040659_4043728_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043724_4044975_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045155_4045917_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045949_4046600_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046602_4047442_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047682_4048426_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048508_4048856_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048953_4049796_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049840_4050728_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050754_4050943_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051040_4052498_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052484_4054011_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054029_4054497_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054496_4055519_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055639_4056359_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056434_4057535_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057536_4058727_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058846_4059863_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060181_4060853_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060849_4061758_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061969_4062617_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066468_4067545_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067555_4068365_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068454_4069228_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069228_4069393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069410_4070361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070249_4071272_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071261_4072416_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072455_4073868_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073992_4074859_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074860_4075685_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075681_4076443_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076523_4077210_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077383_4078391_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078387_4079167_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079224_4080487_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081033_4081984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
