The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	27282	70036	4106346	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	77634	136108	4106346	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	164892	225403	4106346	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	233335	286923	4106346	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077069018.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	390856	448365	4106346	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	589370	650560	4106346	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590796_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592703_593195_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593213_594287_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594333_595437_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595512_596133_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596153_596663_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596717_596969_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597032_598166_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598173_598560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598556_601076_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601504_601843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601839_602346_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602407_603208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603318_604260_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604353_605889_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607568_609419_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609422_610256_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610255_611197_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611448_612420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612561_614850_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615156_616065_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616119_617085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617159_618821_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618892_619603_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619751_620702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621400_621784_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621841_622444_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622461_622863_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622978_623890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623886_624468_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625262_625997_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626037_627087_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627234_627813_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628199_629177_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629270_633665_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633865_634714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634872_635685_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635740_636691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636789_637590_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637651_638035_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638046_639399_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639686_640016_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640018_640768_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640950_641871_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641917_642130_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642152_642575_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642591_643692_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643788_645306_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645381_646221_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646242_647115_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647205_648300_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648593_649544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649618_650560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	655884	702075	4106346	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655884_656910_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656950_657190_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657259_658849_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658848_659397_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659477_660050_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660068_660980_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661053_662022_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662144_663218_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663222_665043_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665119_666070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666158_666494_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666627_667278_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667299_668718_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668787_669543_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669511_670270_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670280_671162_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671178_671886_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671888_672647_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672856_674599_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674591_675116_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675155_675950_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676117_677191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677289_678240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678491_678698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678769_679381_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679935_680187_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680179_680869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681125_682076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682715_683201_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683187_684465_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684467_685886_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685914_686970_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686975_687218_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687340_687943_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688371_689322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689996_690248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690310_690793_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690806_690995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690994_691390_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691386_691785_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691781_692204_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692211_692712_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692966_693485_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693494_693824_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693841_694132_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694157_696770_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696779_697139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697206_697740_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697736_698126_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698118_702075_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	708241	762171	4106346	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708241_709972_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710024_710453_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710455_711136_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711135_711594_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711630_712605_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712621_713938_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713969_714467_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714553_715243_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715242_716292_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716288_717083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717251_717602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717577_718135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719264_720215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722352_723582_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723584_725027_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725131_726277_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726308_727106_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727130_728690_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728686_731059_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731168_732272_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732271_732964_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733107_733809_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733793_734171_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734902_735853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736012_736885_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737225_737444_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737483_738863_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738904_740302_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740341_741994_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741997_742882_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742881_743823_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743901_745521_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745687_746503_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746570_747140_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747140_748091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748745_749843_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749876_751142_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751299_752250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752493_753084_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753099_755544_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755663_756635_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756766_757291_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757250_758201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758422_760618_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760690_761098_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761220_762171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	884760	952736	4106346	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884760_885777_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885973_886957_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888555_889944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889974_890964_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891074_892307_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892588_893389_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893411_895643_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896430_896877_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896898_897645_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897788_898766_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899399_900011_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900004_901222_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901362_902313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902309_903029_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903149_905309_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905399_905669_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905757_905964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905962_906490_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906508_907288_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907455_908472_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908544_909036_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909046_910762_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911925_912876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912872_914705_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915103_915763_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916290_916971_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917252_917969_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917983_919285_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921429_924318_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924541_925894_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925922_926444_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926440_927895_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927929_928178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928283_929159_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929184_930240_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930252_931044_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931076_932447_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933623_934574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934626_934848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935007_935220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935339_936458_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936554_936770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936963_937215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937327_938278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938274_938658_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938712_940527_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940676_941504_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941549_942530_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942526_942739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942735_943917_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944080_944815_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944816_947429_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947564_949478_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950093_950504_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950601_951687_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951785_952736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	996265	1068782	4106346	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996265_997216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997320_998370_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998507_999524_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001032_1001605_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001664_1002396_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002447_1003365_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004172_1007352_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007348_1008731_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008800_1009052_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009197_1009812_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009998_1012059_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012188_1013040_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013036_1013663_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013659_1015414_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015706_1018412_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018424_1020086_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020098_1021889_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022110_1023286_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023328_1024279_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024377_1025118_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025312_1027349_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027366_1028377_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028494_1029688_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029717_1030491_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030487_1031678_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031703_1032642_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032638_1034987_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035141_1035783_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037112_1037265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037296_1037845_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037863_1038349_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038526_1039465_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039467_1039785_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039830_1040775_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042455_1043106_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043159_1043495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043491_1044352_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044368_1044650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044723_1044987_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045230_1046181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046479_1047217_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047652_1047976_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048010_1048571_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048691_1049567_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049579_1050527_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050628_1050922_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050948_1053006_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053020_1053521_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053594_1055301_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056164_1057217_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057269_1057659_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057667_1058300_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058399_1059416_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060246_1061254_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061250_1062894_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062890_1063778_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063918_1064392_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064381_1065404_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065400_1066828_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067765_1068782_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1072535	1134611	4106346	holin,tRNA,transposase	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1072535_1073672_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073668_1074742_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074899_1076336_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076426_1077068_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077403_1078420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080462_1081413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082615_1084037_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087904_1088735_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094450_1094915_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094941_1095892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095909_1096047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097080_1097938_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107617_1109504_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109445_1109697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109741_1110374_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110392_1110995_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111146_1112097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112677_1113385_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115879_1116830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116942_1117401_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117437_1118751_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118768_1119140_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119136_1120600_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120740_1121469_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121450_1124300_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124512_1125463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125630_1126455_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126454_1127333_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128237_1129353_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129381_1130176_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130172_1132038_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132116_1132749_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132745_1133048_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133090_1134611_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1152181	1218700	4106346	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152181_1153978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153977_1154946_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155015_1155861_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155928_1156483_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156529_1157480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157578_1158211_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158375_1160658_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160812_1163509_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163634_1164123_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166533_1169404_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169449_1170664_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170893_1172321_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172418_1173510_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173522_1174281_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174368_1175271_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175267_1176218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176347_1177331_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177385_1178108_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179586_1180942_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181022_1183398_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183562_1185638_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185699_1186494_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186601_1187564_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187551_1188307_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188414_1190052_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190119_1190857_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190959_1191535_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191707_1192244_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192276_1192591_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192606_1193452_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193490_1194870_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194947_1195829_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195927_1196878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196874_1197285_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197392_1198247_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198239_1199202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199247_1200372_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200477_1201356_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201480_1202260_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202413_1203835_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204269_1205967_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206193_1207135_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207461_1208208_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208215_1209142_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209263_1210181_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210220_1211174_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211198_1211777_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213450_1214059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214136_1214490_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214573_1215563_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215765_1216716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216802_1217753_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217749_1218700_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1269628	1326838	4106346	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269628_1270579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274325_1274937_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275159_1276620_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276716_1278309_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278662_1278920_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278921_1280262_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280357_1281047_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281059_1282490_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284214_1285036_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285046_1286618_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286646_1287624_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287650_1288454_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288450_1289245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289252_1290488_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290501_1290915_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291664_1292615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293236_1294964_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295075_1296434_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296726_1297677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297717_1298788_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298810_1299689_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299860_1300832_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300994_1301837_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301998_1302679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302672_1303842_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303838_1304870_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304937_1306155_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306189_1307722_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307802_1308426_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308456_1309068_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309103_1309574_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248146.1|1309748_1309997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1310004_1311009_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311045_1312560_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312563_1313523_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313551_1314355_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314356_1315991_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316074_1317136_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317334_1317604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317607_1318132_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318547_1319498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319494_1320529_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320637_1321276_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321570_1321798_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321920_1322634_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322878_1323829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323968_1324214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324328_1325777_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325887_1326838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1417071	1469224	4106346	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1417071_1418022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418188_1418542_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418554_1418917_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418958_1419384_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419586_1420843_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421041_1422022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422171_1423413_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423511_1424462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424470_1425166_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427987_1428587_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428597_1430763_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430786_1432571_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432570_1432660_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433354_1433627_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433626_1435693_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435689_1436640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436738_1437689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437804_1438137_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438133_1438820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438806_1439766_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439798_1442168_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442167_1442800_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442901_1444242_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444288_1445644_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445934_1446171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446358_1446676_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446948_1447464_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447734_1448490_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448828_1449035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449042_1449702_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449996_1452201_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452311_1453535_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453657_1454632_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454699_1455893_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455907_1456708_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456704_1458561_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458557_1459163_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459181_1460567_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461292_1462519_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462607_1463390_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463488_1464439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464465_1465239_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465250_1466492_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468273_1469224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1514198	1582284	4106346	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514198_1514687_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514804_1515383_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515488_1515857_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515955_1516906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516912_1518025_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518711_1519914_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520117_1522778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522790_1526195_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526862_1529088_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529134_1529461_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529511_1530120_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530218_1531169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531238_1532003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1531999_1532536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532702_1533554_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533613_1534240_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534236_1535187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535285_1536398_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536387_1537389_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537494_1539006_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539002_1540307_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540418_1540979_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541246_1541801_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542256_1542472_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542726_1545324_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545320_1546508_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547166_1547781_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547869_1548991_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549008_1549914_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550806_1551757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551938_1552691_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552759_1553419_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553415_1554144_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554156_1556436_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556460_1556664_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556705_1557338_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557473_1558391_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558387_1559101_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559338_1560109_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560113_1560713_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560957_1562448_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562506_1562791_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563356_1564283_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564419_1565160_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565326_1566703_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566884_1567790_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569441_1571244_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571361_1572012_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572110_1573061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573082_1574303_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574488_1575901_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575964_1577032_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577031_1578519_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578528_1579473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579632_1580331_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580408_1581314_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581333_1582284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1618233	1673824	4106346	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618233_1619184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619242_1620016_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620008_1621565_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621561_1622512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623838_1624441_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624680_1625382_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625375_1626158_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626342_1627293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627391_1628129_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628318_1629077_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629123_1630113_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630290_1631259_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632798_1633767_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633775_1634717_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635190_1636201_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636191_1637706_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637702_1639049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639051_1640086_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640135_1641761_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642313_1643264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643368_1644316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644369_1646184_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646176_1646851_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646980_1650055_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650068_1650368_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650682_1651306_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651549_1652419_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652396_1653341_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653426_1654353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654465_1655245_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655235_1656432_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656462_1657413_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657634_1658324_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658388_1659144_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659195_1660188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660197_1661151_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661266_1662229_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663630_1664059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664055_1665006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665299_1666022_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666460_1667648_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667651_1668002_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669751_1670723_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670736_1671450_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671454_1672372_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672478_1672775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672873_1673824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1831590	1890860	4106346	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831590_1832541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832665_1833475_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833675_1834626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835899_1837117_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838173_1839076_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839152_1840025_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840155_1840524_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840581_1841628_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841823_1843080_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843084_1844422_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844571_1845528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845630_1846563_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846678_1846999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846991_1847351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847398_1848973_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849025_1849970_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849987_1850818_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850810_1852445_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852441_1853797_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854703_1856281_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856284_1857559_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857656_1858031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859746_1860880_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860917_1861523_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861519_1862338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862409_1865034_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865020_1865275_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865341_1865923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866226_1866487_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866652_1867276_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867275_1868049_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868045_1869254_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869279_1869753_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869826_1870777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870875_1871826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871924_1873274_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874039_1874795_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874887_1877770_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878092_1878518_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878545_1879694_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879690_1880197_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880212_1881499_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881548_1882844_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882845_1883484_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883489_1884647_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884673_1886029_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886032_1887103_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887241_1887478_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887565_1888672_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888637_1889942_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889960_1890860_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1901100	1945423	4106346	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901100_1902051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902149_1903100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903299_1904385_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904400_1905162_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905158_1906082_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906180_1906705_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906713_1907457_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907552_1907792_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907805_1907958_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908043_1909534_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909625_1910564_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910560_1910737_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910739_1911402_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913023_1913167_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913163_1914138_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914304_1915255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915251_1916526_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916629_1917823_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917819_1918473_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918469_1919906_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919893_1920253_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921067_1921208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921225_1922176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923221_1925087_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925344_1926865_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926952_1927603_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928551_1929847_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929868_1930753_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930851_1931727_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931716_1932073_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932203_1933178_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933307_1933487_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933584_1934109_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934119_1934956_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935068_1935440_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935436_1935988_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936003_1937695_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937743_1938424_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938671_1939136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939305_1940235_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940247_1940895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940968_1942786_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942869_1943820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944472_1945423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	1975196	2039565	4106346	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975196_1976147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976368_1977319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977417_1978383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978520_1979420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982014_1983502_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983512_1984709_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984781_1986101_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986097_1986973_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987003_1988152_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988169_1988484_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988505_1989228_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989227_1990046_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990050_1990578_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990583_1991840_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992198_1993338_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993415_1994288_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995158_1996109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996068_1996704_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997063_1998386_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998704_1999526_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000950_2001523_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001562_2003392_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003354_2004413_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004450_2004912_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004996_2005743_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007233_2010464_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010530_2011862_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012114_2012489_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012591_2013770_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013780_2014371_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014481_2015288_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015313_2016108_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017108_2018083_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018241_2018754_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018910_2019882_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021626_2022433_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022429_2023731_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023681_2024446_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024559_2025330_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025414_2026602_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026674_2027049_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027149_2028412_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028408_2029266_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029438_2030440_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030891_2031842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033405_2034557_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034925_2035162_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035225_2035393_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035506_2037402_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037565_2038516_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038614_2039565_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	2171093	2220746	4106346	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171093_2172044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172142_2174137_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174196_2175162_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175151_2178013_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178015_2178522_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178626_2179835_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179836_2180775_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180936_2181410_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181406_2182357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182467_2182908_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183036_2184266_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184304_2185126_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185179_2186331_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186422_2186911_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189461_2192011_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192081_2194655_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194920_2195121_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195152_2195314_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195371_2195710_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195858_2196809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197583_2198252_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198233_2200189_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200431_2201181_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201193_2202057_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202060_2203476_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203609_2204338_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204476_2204677_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204852_2205251_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205274_2206675_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206793_2207546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207834_2208512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208538_2209318_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209314_2210199_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210216_2210996_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210980_2211739_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211876_2212512_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212779_2213796_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213893_2214934_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215068_2216361_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217720_2218104_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218121_2218709_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218746_2219697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219795_2220746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	2477053	2535297	4106346	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2477053_2478004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478483_2479140_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479154_2480822_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480824_2481454_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481665_2482760_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482904_2483717_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483720_2485304_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485474_2486605_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486791_2487868_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487949_2488600_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488614_2490018_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490301_2491120_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2491116_2491821_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492720_2493836_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493869_2494244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494266_2495424_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495436_2495670_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496304_2499274_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499288_2499498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499649_2500279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500275_2502333_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502389_2503070_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503066_2503627_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503633_2504731_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504883_2505477_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505473_2506766_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506779_2507322_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507331_2508168_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508201_2509263_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509304_2510357_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510372_2510675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510816_2511767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2511945_2513640_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513636_2514722_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514769_2515669_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515679_2516324_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517345_2520588_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520598_2521753_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521979_2522942_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523040_2523991_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524089_2525040_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525049_2525739_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525798_2526236_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526281_2527175_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527222_2528395_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528391_2529546_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2529742_2530093_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530082_2530517_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530533_2531484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531631_2532099_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532079_2533237_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533302_2534229_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534346_2535297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	2577575	2644075	4106346	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577575_2578526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578895_2579468_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579470_2580481_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580473_2580974_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580984_2581326_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581394_2582129_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582145_2582415_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582437_2583226_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583272_2584289_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584505_2585948_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586126_2587746_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587866_2589687_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589765_2591298_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591331_2592978_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593047_2594070_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594087_2595221_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595223_2595913_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595912_2596698_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596741_2597506_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597544_2598966_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599031_2599736_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599783_2600203_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600215_2600623_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600806_2601517_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601643_2601934_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601951_2602434_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606939_2608094_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608399_2609416_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609662_2610451_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610517_2611198_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611194_2611965_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612063_2613014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613069_2613987_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2613997_2615176_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615195_2616191_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617779_2618388_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618375_2619416_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619433_2620396_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620392_2621586_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621582_2622380_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622405_2623392_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623410_2625450_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625651_2626332_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626345_2627257_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627253_2627832_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627970_2628876_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628883_2632303_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632290_2634891_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635846_2636479_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636872_2637631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637627_2638830_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639017_2639968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640875_2642021_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642007_2642763_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642879_2643059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643124_2644075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	2672190	2709602	4106346	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672190_2673141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673239_2674190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674282_2674822_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674928_2675273_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675330_2676779_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676966_2677302_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678929_2680108_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680190_2680691_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680800_2681502_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2681513_2681978_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2681992_2682268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682264_2683041_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683069_2683897_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684022_2684493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684619_2685513_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685560_2686742_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686754_2687570_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687703_2688231_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688227_2688725_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688872_2689250_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689471_2690422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690520_2691132_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691366_2692494_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692604_2693693_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693745_2694597_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694616_2695498_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695674_2696988_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697198_2698032_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698028_2698610_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698963_2699914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699929_2701045_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701147_2702074_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702073_2703312_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703308_2704076_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704076_2704778_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704859_2705306_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2706195_2706834_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707602_2708553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708651_2709602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	2808695	2863212	4106346	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808695_2809646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2809974_2810580_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810633_2811947_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812021_2812492_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812491_2813280_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813290_2814943_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815030_2815981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817142_2817649_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817645_2818410_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818425_2818710_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818774_2819764_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819935_2820865_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820836_2821523_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821556_2822102_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822146_2823412_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823408_2824311_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825492_2826437_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826531_2828049_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828090_2829719_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829826_2830708_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833820_2834195_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834219_2834558_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834601_2836236_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836274_2837621_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837728_2839150_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839219_2839804_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839906_2840857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840991_2842098_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842108_2843206_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843350_2844556_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844562_2845084_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845080_2845563_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845568_2845820_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845800_2846286_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846421_2849883_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849900_2850785_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850794_2851226_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851472_2851976_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852053_2853454_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853528_2854404_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854400_2855408_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855875_2856181_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856271_2856862_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857052_2858069_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858260_2860597_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860679_2861114_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861212_2862163_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862261_2863212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	2871237	2928023	4106346	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2871237_2872188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873894_2874161_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874868_2875207_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879760_2880363_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880459_2881749_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881806_2882538_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882534_2883338_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883334_2884423_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884419_2885349_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885497_2886643_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886664_2887615_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2887945_2891767_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891923_2892592_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892596_2894270_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894288_2895608_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895612_2897928_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2897983_2900152_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900148_2905329_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905427_2905742_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905969_2906215_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906309_2906828_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906927_2908133_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908248_2909646_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909762_2910341_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910413_2911805_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911972_2912923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913203_2913824_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913820_2914234_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914230_2915274_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915329_2915518_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915527_2916292_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916382_2917039_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917130_2917889_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917914_2919516_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919716_2920721_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920821_2921085_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921202_2921979_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922569_2923520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925903_2927016_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927072_2928023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	2958409	3002100	4106346	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2958409_2959360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959480_2960377_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962654_2964880_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965044_2966133_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966089_2966743_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966790_2967588_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968119_2969070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969150_2970299_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970355_2971306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971404_2971710_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971738_2972173_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972174_2973419_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973415_2974126_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974140_2975052_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975414_2975819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975815_2976274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976280_2977189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977185_2978052_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978038_2978866_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978876_2980004_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981081_2982320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982361_2983624_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983630_2984383_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984434_2984620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984895_2985360_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985391_2986051_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986195_2988304_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988300_2989251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989354_2989975_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990078_2990819_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991953_2993078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993123_2993492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993733_2994684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995719_2996262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996459_2996630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996647_2997598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997594_2998503_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998629_2999466_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2999978_3001088_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001149_3002100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	3382046	3435787	4106346	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382046_3382997_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383401_3384046_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384070_3384655_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384755_3385373_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385375_3387091_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387087_3387396_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387412_3388030_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388074_3388377_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388477_3389332_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389519_3389744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389913_3390186_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390603_3391011_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391380_3392175_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392275_3393511_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393579_3394596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394607_3395984_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3395980_3397177_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397173_3398712_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398708_3399968_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401908_3402859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403625_3404720_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404712_3406047_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406000_3406684_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406709_3407873_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407869_3408871_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408870_3409743_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409739_3410489_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410485_3411277_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411273_3412413_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412688_3413474_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413507_3414290_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414293_3414683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415822_3416686_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416721_3417810_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417806_3418757_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419110_3422089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423015_3423894_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425842_3426793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426789_3427257_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427299_3428070_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428090_3428891_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428901_3430311_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430405_3431191_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431430_3432447_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432554_3432947_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433084_3433765_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433769_3434741_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434836_3435787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	3441942	3501240	4106346	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3441942_3443706_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443817_3444696_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444808_3445624_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445627_3445879_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3445963_3446980_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447310_3447532_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449892_3450810_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451307_3452516_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452595_3454167_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454284_3455220_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455408_3456353_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456920_3462638_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462643_3463771_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463826_3464453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3464724_3465741_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465836_3466547_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466543_3467533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467628_3469260_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469262_3470000_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470155_3471028_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471377_3472517_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472513_3473173_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473244_3473877_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473906_3474425_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474435_3475545_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475591_3476446_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476447_3477350_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478572_3479523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481277_3482267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482442_3483231_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483227_3484259_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484277_3484841_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484896_3486417_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486680_3487385_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487392_3488121_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488235_3488610_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488652_3489942_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489938_3491108_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491104_3491944_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492003_3492939_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492951_3493902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494000_3494963_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3494994_3495354_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495478_3496381_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496382_3498155_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498189_3498966_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500289_3501240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	3516178	3574251	4106346	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516178_3517129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517257_3518391_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518434_3519340_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519342_3521043_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521039_3521960_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3521967_3522945_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523003_3524038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526012_3526249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526375_3527239_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527327_3528149_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528228_3528966_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3528962_3529955_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530107_3530731_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530775_3531924_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3534247_3535198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535538_3536489_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536587_3537538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537834_3538332_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538374_3540150_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540157_3541024_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541030_3541765_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542934_3543729_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544018_3544609_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544642_3545971_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546045_3547191_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547302_3548301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548263_3548698_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550214_3551099_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551095_3552301_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552297_3553158_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553270_3555061_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555101_3555746_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3555767_3556076_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556241_3557528_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3558961_3559912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561863_3563078_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563183_3564173_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564169_3564778_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564790_3565420_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565416_3566037_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566068_3566860_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567711_3568167_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568185_3569112_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569165_3570452_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571382_3572255_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572251_3573202_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573300_3574251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011763	Bordetella pertussis strain J090 chromosome, complete genome	4106346	4005414	4070326	4106346	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005414_4005900_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005988_4006126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006118_4007099_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007365_4008175_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008214_4008895_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008888_4009347_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009358_4009721_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009803_4010487_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010542_4010851_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010869_4011184_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011180_4013655_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013662_4015054_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015050_4015236_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015214_4015916_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015912_4016734_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016714_4017839_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017831_4018851_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019056_4019947_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020191_4020983_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021065_4021440_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021417_4022827_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022819_4024202_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024536_4026141_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026218_4027190_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027200_4028127_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028517_4029468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029637_4030864_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031063_4031930_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031922_4032885_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032985_4033936_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034034_4034985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035083_4036034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036030_4037524_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037520_4040628_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040624_4043693_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043689_4044940_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045120_4045873_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045914_4046559_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046567_4047548_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047647_4048391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048473_4048821_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048918_4049761_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049805_4050693_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050719_4050908_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051005_4052463_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052449_4053976_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053994_4054462_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054461_4055484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055604_4056345_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056399_4057500_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057501_4058692_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058811_4059828_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060146_4060818_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060814_4061723_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061934_4062582_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066442_4067510_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067520_4068330_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068419_4069193_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069375_4070326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
