assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001987895.1_ASM198789v1	NZ_CP011762	Bordetella pertussis strain J076 chromosome, complete genome	1	645920-646029	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	GGGGACAGATACCGTCTTGGCCGTCAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA	NA|272aa|up_9|NZ_CP011762.1_632848_633664_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|293aa|up_8|NZ_CP011762.1_633776_634655_-	PRK00030, minC, septum site-determining protein MinC	NA|588aa|up_7|NZ_CP011762.1_634766_636530_-	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|447aa|up_6|NZ_CP011762.1_636645_637986_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|475aa|up_5|NZ_CP011762.1_639055_640480_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|234aa|up_4|NZ_CP011762.1_640479_641181_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|317aa|up_3|NZ_CP011762.1_642685_643636_+	pfam00665, rve, Integrase core domain	NA|324aa|up_2|NZ_CP011762.1_643731_644703_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|227aa|up_1|NZ_CP011762.1_644707_645388_-	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|131aa|up_0|NZ_CP011762.1_645525_645918_+	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_0|NZ_CP011762.1_647281_648067_-	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI	NA|470aa|down_1|NZ_CP011762.1_648161_649571_-	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|267aa|down_2|NZ_CP011762.1_649581_650382_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|257aa|down_3|NZ_CP011762.1_650402_651173_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|156aa|down_4|NZ_CP011762.1_651215_651683_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|317aa|down_5|NZ_CP011762.1_651679_652630_-	pfam00665, rve, Integrase core domain	NA|293aa|down_6|NZ_CP011762.1_654578_655457_-	pfam00487, FA_desaturase, Fatty acid desaturase	NA|993aa|down_7|NZ_CP011762.1_656383_659362_-	pfam17936, Big_6, Bacterial Ig domain	NA|317aa|down_8|NZ_CP011762.1_659715_660666_+	pfam00665, rve, Integrase core domain	NA|363aa|down_9|NZ_CP011762.1_660662_661751_-	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs
GCF_001987895.1_ASM198789v1	NZ_CP011762	Bordetella pertussis strain J076 chromosome, complete genome	2	2928485-2928601	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA|101aa|down_9|NZ_CP011762.1_2941284_2941587_+	NA|163aa|up_9|NZ_CP011762.1_2910209_2910698_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|899aa|up_8|NZ_CP011762.1_2910823_2913520_+	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional	NA|761aa|up_7|NZ_CP011762.1_2913674_2915957_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|208aa|up_6|NZ_CP011762.1_2916130_2916754_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|317aa|up_5|NZ_CP011762.1_2916852_2917803_+	pfam00665, rve, Integrase core domain	NA|185aa|up_4|NZ_CP011762.1_2917849_2918404_-	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|282aa|up_3|NZ_CP011762.1_2918471_2919317_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|323aa|up_2|NZ_CP011762.1_2919386_2920355_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|288aa|up_1|NZ_CP011762.1_2920354_2921218_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|1309aa|up_0|NZ_CP011762.1_2924050_2927977_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|1077aa|down_0|NZ_CP011762.1_2928712_2931943_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_1|NZ_CP011762.1_2932224_2933052_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_2|NZ_CP011762.1_2933085_2933781_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_3|NZ_CP011762.1_2933773_2935054_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_4|NZ_CP011762.1_2935063_2936041_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_5|NZ_CP011762.1_2936022_2937723_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|368aa|down_6|NZ_CP011762.1_2937825_2938930_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_7|NZ_CP011762.1_2938959_2939715_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|507aa|down_8|NZ_CP011762.1_2939721_2941242_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|101aa|down_9|NZ_CP011762.1_2941284_2941587_+	NA
GCF_001987895.1_ASM198789v1	NZ_CP011762	Bordetella pertussis strain J076 chromosome, complete genome	3	3643364-3643457	3	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA	NA|391aa|up_9|NZ_CP011762.1_3632170_3633343_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_8|NZ_CP011762.1_3633468_3634446_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_7|NZ_CP011762.1_3634456_3635428_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_6|NZ_CP011762.1_3635494_3636280_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_5|NZ_CP011762.1_3636272_3637505_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_4|NZ_CP011762.1_3637700_3638456_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_3|NZ_CP011762.1_3638566_3639085_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|467aa|up_2|NZ_CP011762.1_3640873_3642274_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|NZ_CP011762.1_3642373_3642718_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|NZ_CP011762.1_3642806_3643277_+	pfam00582, Usp, Universal stress protein family	NA|133aa|down_0|NZ_CP011762.1_3643687_3644086_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|317aa|down_1|NZ_CP011762.1_3644217_3645168_-	pfam00665, rve, Integrase core domain	DEDDh|245aa|down_2|NZ_CP011762.1_3647612_3648347_+	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|60aa|down_3|NZ_CP011762.1_3648756_3648936_+	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|438aa|down_4|NZ_CP011762.1_3649126_3650440_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|504aa|down_5|NZ_CP011762.1_3650455_3651967_-	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|402aa|down_6|NZ_CP011762.1_3651963_3653169_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|326aa|down_7|NZ_CP011762.1_3653364_3654342_-	pfam00665, rve, Integrase core domain	NA|165aa|down_8|NZ_CP011762.1_3654434_3654929_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|353aa|down_9|NZ_CP011762.1_3655058_3656117_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1
GCF_001987895.1_ASM198789v1	NZ_CP011762	Bordetella pertussis strain J076 chromosome, complete genome	4	3824816-3824900	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA	NA|585aa|up_9|NZ_CP011762.1_3812773_3814528_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|300aa|up_8|NZ_CP011762.1_3814634_3815534_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|NZ_CP011762.1_3815598_3816582_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|NZ_CP011762.1_3816717_3817698_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|NZ_CP011762.1_3817714_3819106_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|NZ_CP011762.1_3819257_3819794_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|NZ_CP011762.1_3819724_3821110_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|NZ_CP011762.1_3821252_3821891_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|NZ_CP011762.1_3821977_3823867_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|NZ_CP011762.1_3823863_3824805_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|NZ_CP011762.1_3824910_3825960_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|NZ_CP011762.1_3826212_3826914_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|NZ_CP011762.1_3826910_3827609_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|NZ_CP011762.1_3827609_3828965_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|NZ_CP011762.1_3828961_3829453_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|NZ_CP011762.1_3829471_3830428_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|701aa|down_6|NZ_CP011762.1_3831838_3833941_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|348aa|down_7|NZ_CP011762.1_3834111_3835155_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_8|NZ_CP011762.1_3835198_3835942_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|137aa|down_9|NZ_CP011762.1_3836963_3837374_-	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase
