The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	0	59497	4112724	tRNA,transposase	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	70134	123122	4112724	tRNA,transposase	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	165942	226453	4112724	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	234385	287973	4112724	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_010929591.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	391906	449415	4112724	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	591469	652659	4112724	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592895_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594802_595294_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595312_596386_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596432_597536_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597611_598232_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598252_598762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598816_599068_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599131_600265_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600272_600659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600655_603175_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603603_603942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603938_604445_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604506_605307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605417_606359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606452_607988_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609667_611518_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611521_612355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612354_613296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613547_614519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614660_616949_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617255_618164_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618218_619184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619258_620920_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620991_621702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621668_621833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621850_622801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623499_623883_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623940_624543_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624560_624962_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625077_625989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625985_626567_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627361_628096_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628136_629186_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629333_629912_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630298_631276_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631369_635764_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635964_636813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636971_637784_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637839_638790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638888_639689_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639750_640134_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640145_641498_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641785_642115_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642117_642867_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643049_643970_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644016_644229_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644251_644674_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644690_645791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645887_647405_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647480_648320_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648341_649214_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649304_650399_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	657983	704174	4112724	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657983_659009_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659049_659289_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659358_660948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660947_661496_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661576_662149_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662167_663079_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663152_664121_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664243_665317_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665321_667142_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667218_668169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668257_668593_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668726_669377_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669398_670817_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670886_671642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671610_672369_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672379_673261_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673277_673985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673987_674746_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674955_676698_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676690_677215_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677254_678049_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678216_679290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679388_680339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680590_680797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680868_681480_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682034_682286_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682278_682968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682985_683207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683224_684175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684814_685300_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685286_686564_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686566_687985_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688013_689069_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689074_689317_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689439_690042_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690470_691421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692095_692347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692409_692892_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692905_693094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693093_693489_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693485_693884_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693880_694303_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694310_694811_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695065_695584_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695593_695923_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695940_696231_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696256_698869_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698878_699238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699305_699839_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699835_700225_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700217_704174_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	710340	764270	4112724	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710340_712071_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712123_712552_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712554_713235_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713234_713693_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713729_714704_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714720_716037_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716068_716566_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716652_717342_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717341_718391_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718387_719182_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719350_719701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719676_720234_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721363_722314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724451_725681_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725683_727126_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727230_728376_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728407_729205_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729229_730789_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730785_733158_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733267_734371_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734370_735063_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735206_735908_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735892_736270_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737001_737952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738111_738984_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739324_739543_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739582_740962_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741003_742401_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742440_744093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744096_744981_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744980_745922_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746000_747620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747786_748602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748669_749239_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749239_750190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750844_751942_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751975_753241_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753398_754349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754592_755183_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755198_757643_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757762_758734_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758865_759390_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759349_760300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760521_762717_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762789_763197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763319_764270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	886859	1027433	4112724	transposase	Bacillus_phage(11.11%)	114	NA	NA
WP_023994644.1|886859_887876_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888072_889056_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890654_892043_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892073_893063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893173_894406_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894687_895488_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895510_897742_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898529_898976_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898997_899744_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899887_900865_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901498_902110_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902103_903321_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903461_904412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904408_905128_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905248_907408_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907498_907768_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907856_908063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908061_908589_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908607_909387_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909554_910571_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910643_911135_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911145_912861_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914024_914975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914971_916804_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917202_917862_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918389_919070_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919351_920068_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920082_921384_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923528_926417_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926640_927993_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928021_928543_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928539_929994_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930028_930277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930382_931258_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931283_932339_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932351_933143_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933175_934546_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935722_936673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936725_936947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937106_937319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937438_938557_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938653_938869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939062_939314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939426_940377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940373_940757_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940811_942626_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942775_943603_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943648_944629_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944625_944838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944834_946016_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946179_946914_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946915_949528_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949663_951577_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952192_952603_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952700_953786_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953884_954835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954831_955806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955930_956842_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957118_957511_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957640_958591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958620_958803_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959575_960757_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960972_961650_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961646_962372_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962497_963079_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963449_966131_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|966133_967264_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|967256_968342_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968428_969328_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969324_970653_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970667_971339_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971526_973242_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973243_973603_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973794_974109_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974151_975372_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975368_976310_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976306_977296_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977330_977915_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978013_978964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979044_979956_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980016_981162_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981181_982096_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982167_982917_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982916_983846_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984089_985916_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985998_986640_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986829_987864_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989706_990771_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991568_992477_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993964_995239_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995392_995773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995780_996653_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996958_997339_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997549_998275_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|998370_999321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999425_1000475_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000612_1001629_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003137_1003710_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003769_1004501_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004552_1005470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006277_1009457_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009453_1010836_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010905_1011157_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011302_1011917_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012103_1014164_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014293_1015145_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015141_1015768_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015764_1017519_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017811_1020517_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020529_1022191_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022203_1023994_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024215_1025391_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025433_1026384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026482_1027433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	1048384	1099046	4112724	tRNA,holin,transposase	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1048384_1049335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049633_1050371_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050806_1051130_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051164_1051725_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051845_1052721_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052733_1053681_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053782_1054076_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054102_1056160_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056174_1056675_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056748_1058455_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059318_1060371_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060423_1060813_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060821_1061454_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061553_1062570_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063400_1064408_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064404_1066048_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066044_1066932_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067072_1067546_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067535_1068558_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068554_1069982_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070919_1071936_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072268_1073204_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073253_1075134_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075200_1075545_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075689_1076826_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076822_1077896_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078053_1079490_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079580_1080222_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080557_1081574_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083514_1084465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085769_1087191_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087454_1088171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088255_1088573_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088613_1089027_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089028_1089388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089430_1090975_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091058_1091889_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091923_1093078_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093120_1093993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062826528.1|1094109_1096398_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097604_1098069_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098095_1099046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	1114300	1179371	4112724	tRNA,transposase	Catovirus(25.0%)	46	NA	NA
WP_010929591.1|1114300_1115251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115831_1116539_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116897_1117884_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118023_1119037_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119033_1119984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1120001_1120142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120096_1120555_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120591_1121905_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121922_1122294_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122290_1123754_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123894_1124623_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124604_1127454_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127666_1128617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128784_1129609_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129608_1130487_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131391_1132507_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132535_1133330_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133326_1135192_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135270_1135903_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135899_1136202_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136244_1137765_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137771_1138527_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138556_1139661_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139763_1141464_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1141445_1142423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1142432_1143713_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143705_1144401_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1144434_1145262_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145543_1148774_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1149509_1153436_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1155335_1157132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1157131_1158100_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158169_1159015_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159082_1159637_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159683_1160634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1160732_1161365_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1161528_1163811_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163965_1166662_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166787_1167276_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169686_1172557_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172602_1173817_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174046_1175474_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1175571_1176663_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176675_1177434_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177521_1178424_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178420_1179371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	1319005	1387492	4112724	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319005_1319956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320724_1321363_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322252_1322699_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322780_1323482_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323482_1324250_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324246_1325485_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325484_1326411_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326513_1327629_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327644_1328595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328948_1329530_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329526_1330360_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330570_1331884_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332060_1332942_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332961_1333813_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333865_1334954_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335064_1336192_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336426_1337038_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337136_1338087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338308_1338686_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338833_1339331_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339327_1339855_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339988_1340804_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340816_1341998_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342045_1342939_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343065_1343536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343661_1344489_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344517_1345294_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345290_1345566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345580_1346045_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346056_1346758_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346867_1347368_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347450_1348629_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350256_1350592_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350779_1352228_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352285_1352630_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352736_1353276_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353368_1354319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354336_1354576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355057_1355489_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355670_1356075_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357311_1357635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357637_1358525_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358557_1358983_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359054_1359408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359647_1360154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360192_1361524_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361583_1362399_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362395_1363250_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366312_1368856_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370222_1371977_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371973_1374094_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374098_1376294_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376290_1379632_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382434_1383385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383450_1383630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383746_1384502_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384488_1385634_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386541_1387492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	1447983	1503471	4112724	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447983_1448934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450135_1450582_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450574_1452050_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452046_1452802_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452794_1453805_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453794_1455471_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455783_1456116_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456129_1456525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456534_1456861_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456857_1457184_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457110_1458133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458129_1458480_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458527_1458956_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458963_1460337_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460477_1460855_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461117_1462425_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462485_1463316_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463312_1463801_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463842_1465363_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465406_1465883_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466686_1469284_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469313_1470135_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470861_1471611_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471794_1472673_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472770_1473487_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473501_1474062_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474228_1474993_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475012_1475870_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475866_1477066_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477105_1478440_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478492_1480829_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480954_1481518_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481526_1482618_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482689_1483145_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483145_1483940_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483936_1485118_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485104_1485710_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485706_1486480_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486491_1487319_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487480_1489844_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489911_1490631_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490754_1491180_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491214_1492165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492282_1493209_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493274_1494432_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494412_1494880_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495027_1495978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495994_1496429_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496418_1496769_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496965_1498120_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498116_1499289_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499336_1500230_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500275_1500713_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500772_1501462_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501471_1502422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502520_1503471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	1598168	1658081	4112724	tRNA,transposase	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1598168_1598657_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598774_1599353_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599458_1599827_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599925_1600876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600882_1601995_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602681_1603884_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604087_1606748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606760_1610165_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610832_1613058_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613104_1613431_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613481_1614090_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614188_1615139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615237_1616188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616257_1617022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617018_1617555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617721_1618573_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618632_1619259_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619255_1620206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620304_1621417_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621406_1622408_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622513_1624025_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624021_1625326_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625437_1625998_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626265_1626820_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627275_1627491_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627745_1630343_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630339_1631527_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632186_1632801_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632889_1634011_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634028_1634934_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635826_1636777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636958_1637711_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637779_1638439_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638435_1639164_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639176_1641456_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641480_1641684_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641725_1642358_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642493_1643411_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643407_1644121_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644358_1645129_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645133_1645733_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645977_1647468_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647526_1647811_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648376_1649303_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649439_1650180_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650346_1651723_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651904_1652810_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654461_1656264_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656381_1657032_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1657130_1658081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	1703253	1752533	4112724	transposase	Brazilian_cedratvirus(25.0%)	41	NA	NA
WP_005013747.1|1703253_1704204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704262_1705036_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705028_1706585_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706581_1707532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708858_1709461_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709700_1710402_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710395_1711178_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711362_1712313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712411_1713149_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713338_1714097_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714143_1715133_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715310_1716279_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717818_1718787_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718795_1719737_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720210_1721221_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721211_1722726_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722722_1724069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724071_1725106_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725155_1726781_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727333_1728284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728388_1729336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729389_1731204_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731196_1731871_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1732000_1735075_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735088_1735388_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735702_1736326_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736569_1737439_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737416_1738361_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738446_1739373_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739485_1740265_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740255_1741452_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741482_1742433_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742654_1743344_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743408_1744164_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744215_1745208_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745217_1746171_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746286_1747249_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748650_1749079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749075_1750026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750319_1751042_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005012808.1|1751582_1752533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	1992656	2062308	4112724	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992656_1995314_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995391_1996594_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996590_1997103_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997225_1997663_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997939_1998890_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998988_1999939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2000102_2001998_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2002111_2002279_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002342_2002579_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2002947_2004099_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005662_2006613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007064_2008066_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008238_2009096_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009092_2010355_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010455_2010830_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2010902_2012090_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012174_2012945_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013058_2013823_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013773_2015075_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2015071_2015878_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2017622_2018594_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018750_2019263_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019421_2020396_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021396_2022191_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022216_2023023_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023133_2023724_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023734_2024913_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025015_2025390_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025642_2026974_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027040_2030271_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031761_2032508_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032592_2033054_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033091_2034150_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034112_2035942_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035981_2036554_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037978_2038800_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039118_2040441_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040800_2041436_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041395_2042346_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043216_2044089_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044166_2045306_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045664_2046921_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046926_2047454_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047458_2048277_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048276_2048999_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049020_2049335_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049352_2050501_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050531_2051407_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051403_2052723_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052795_2053992_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2054002_2055490_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058084_2058984_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059121_2060087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060185_2061136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061357_2062308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2073804	2123200	4112724	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073804_2074755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075892_2076189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076363_2077716_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077858_2078875_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080854_2081868_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2081954_2082860_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083016_2083361_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2083518_2083977_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083990_2086207_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086203_2087265_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087293_2088268_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088219_2089038_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089050_2089659_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2089833_2090229_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090247_2091687_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091715_2092063_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092081_2093032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2093684_2094635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094718_2096536_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096609_2097257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097269_2098199_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098368_2098833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099080_2099761_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099809_2101501_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2101516_2102068_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102064_2102436_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2102548_2103385_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103395_2103920_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104017_2104197_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2104326_2105301_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105431_2105788_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2105777_2106653_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106751_2107636_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107657_2108953_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109901_2110552_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2110639_2112160_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112417_2114283_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115328_2116279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2116296_2116437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2117251_2117611_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2117598_2119035_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119031_2119685_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2119681_2120875_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2120978_2122253_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2122249_2123200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2134404	2175095	4112724	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2134404_2135355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2135453_2136404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2136363_2136777_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137061_2137361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2137770_2140053_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2140738_2142769_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2142788_2143001_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2143278_2143818_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2143931_2145227_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2145303_2146461_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2146644_2147544_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2147562_2148867_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2148832_2149939_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150026_2150263_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2150401_2151472_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2151475_2152831_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2152857_2154015_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154020_2154659_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2154660_2155956_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2156005_2157292_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2157307_2157814_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2157810_2158959_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2158986_2159412_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2159734_2162617_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2162709_2163465_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2164230_2165580_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2165678_2166629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2166727_2167678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2167751_2168225_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2168250_2169459_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2169455_2170229_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2170228_2170852_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171017_2171278_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2171581_2172163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2172229_2172484_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2172470_2175095_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2202878	2268427	4112724	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2202878_2203829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204029_2204839_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2204963_2205914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205910_2206804_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206928_2207123_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207122_2207464_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2207473_2209336_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2209465_2209978_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209980_2210304_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210305_2210716_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210753_2211965_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211982_2212495_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212710_2213202_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213454_2215491_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2215568_2216771_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2216899_2217550_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219107_2220058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220628_2220841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220858_2221590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221624_2222266_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222258_2222927_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225139_2225916_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225937_2227095_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227091_2227523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2227519_2228317_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2228336_2228738_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228804_2229776_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229841_2231065_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231292_2232243_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232366_2234820_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235008_2236313_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236417_2237071_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237073_2238384_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2238562_2239141_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239252_2239453_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239798_2240365_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240448_2240652_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240958_2241279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241320_2241602_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241676_2242933_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243315_2243645_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245215_2246037_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246036_2247176_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247182_2248079_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2248093_2250001_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250360_2252973_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253025_2255326_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255322_2256531_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2256792_2257167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257163_2258114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258212_2260207_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260266_2261232_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261221_2264083_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264085_2264592_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264696_2265905_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265906_2266845_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2267006_2267480_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2267476_2268427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2354604	2418182	4112724	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2354604_2355555_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2355856_2356333_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2356956_2358594_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2358624_2359938_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2360071_2360389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2360489_2361812_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2361808_2362759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2362857_2363808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2364337_2365360_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2365388_2366219_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2366235_2367933_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2367997_2369074_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2369233_2370097_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2370127_2370697_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2370713_2371565_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2372622_2373504_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2373578_2374568_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2374630_2375581_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2375643_2376501_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2376560_2377049_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2378621_2379812_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2379808_2381395_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2381413_2382481_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2382585_2384130_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2384549_2386124_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2386240_2387248_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2387244_2388084_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2388088_2389726_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2389722_2390673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2390690_2390834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2390815_2392090_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2392119_2392410_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2392482_2393496_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2393515_2394778_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2394780_2395704_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2395700_2397194_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2397204_2398137_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2398318_2399644_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2399678_2401034_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2401094_2402615_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2402769_2403501_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2403598_2404909_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2404924_2405836_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2405826_2406420_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2406481_2406868_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2406879_2407350_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2407361_2407985_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2408005_2410753_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2417231_2418182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2538330	2604051	4112724	tRNA,protease,transposase	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2538330_2540274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2540270_2541191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2541210_2541798_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2541790_2542681_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2542677_2543439_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2543444_2544329_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2544351_2546145_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2546275_2547763_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2547800_2548859_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2548858_2549359_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2549371_2549971_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2549967_2550468_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2550469_2551699_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2551888_2552128_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2552310_2553063_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2553064_2554000_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2554081_2555068_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2555067_2556126_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2556182_2556365_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2556416_2557010_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2557118_2557718_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2557714_2558425_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2558426_2559254_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2561070_2562312_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562323_2563097_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563123_2564074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564172_2564955_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565043_2566270_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2566995_2568381_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568399_2569005_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2569001_2570858_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570854_2571655_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571669_2572863_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572930_2573905_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574027_2575251_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575361_2577566_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577860_2578520_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578527_2578734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579072_2579828_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2580098_2580614_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580886_2581204_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581391_2581628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581918_2583274_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583320_2584661_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584762_2585395_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585394_2587764_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587796_2588756_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588742_2589429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589425_2589758_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589873_2590824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590922_2591873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2591869_2593936_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2593935_2594208_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2594902_2594992_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2594991_2596776_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2596799_2598965_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2598975_2599575_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2602396_2603092_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2603100_2604051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2690168	2730837	4112724	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2690168_2691119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691229_2691412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691511_2692108_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692291_2693383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693882_2694293_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2694351_2694681_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2694698_2697116_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697128_2698151_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698225_2698585_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698600_2698798_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699133_2700084_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700278_2700728_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700724_2701675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701785_2703234_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703348_2703594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703733_2704684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704928_2705642_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705764_2705992_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706286_2706925_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707033_2708068_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708064_2709015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709430_2709955_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709958_2710228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710426_2711488_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711571_2713206_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713207_2714011_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714039_2714999_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2715002_2716517_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716553_2717558_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2717989_2718460_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718495_2719107_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719137_2719761_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719841_2721374_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721408_2722626_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722693_2723725_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723721_2724891_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724884_2725565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725726_2726569_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726731_2727703_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727874_2728753_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728775_2729846_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729886_2730837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2786302	2859172	4112724	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2786302_2786719_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786829_2787462_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787490_2787934_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787955_2789047_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2789101_2789902_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790037_2790658_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790797_2791271_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792410_2793361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793357_2801019_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801259_2805306_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805618_2806200_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806196_2807495_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807574_2808603_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808863_2809814_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2809810_2810761_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811077_2811683_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811736_2813050_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813124_2813595_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813594_2814383_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814393_2816046_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816133_2817084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818245_2818752_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818748_2819513_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819528_2819813_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819877_2820867_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821038_2821968_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821939_2822626_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822659_2823205_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823249_2824515_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824511_2825414_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826595_2827540_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827634_2829152_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829193_2830822_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830929_2831811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834923_2835298_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835322_2835661_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835704_2837339_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837377_2838724_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838831_2840253_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840322_2840907_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2841009_2841960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842094_2843201_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843211_2844309_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844453_2845659_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845665_2846187_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846183_2846666_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846671_2846923_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846903_2847389_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847524_2850986_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851003_2851888_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851897_2852329_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852575_2853079_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853156_2854557_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854631_2855507_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855503_2856511_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856978_2857284_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857374_2857965_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858155_2859172_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2862315	2929126	4112724	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2862315_2863266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863364_2864315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2864311_2865106_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2865137_2865842_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2865916_2866717_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2866713_2867121_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2867117_2867759_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2867751_2869752_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2871012_2872344_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2872340_2873291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874997_2875264_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875971_2876310_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880863_2881466_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881562_2882852_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882909_2883641_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883637_2884441_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884437_2885526_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885522_2886452_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886600_2887746_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887767_2888718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2888735_2888894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889048_2892870_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893026_2893695_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893699_2895373_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895391_2896711_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896715_2899031_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899086_2901255_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901251_2906432_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906530_2906845_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907072_2907318_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907412_2907931_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908030_2909236_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909351_2910749_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910865_2911444_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911516_2912908_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913075_2914026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914306_2914927_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914923_2915337_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915333_2916377_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916432_2916621_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916630_2917395_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917485_2918142_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918233_2918992_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919017_2920619_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920819_2921824_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921924_2922188_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922305_2923082_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923672_2924623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927006_2928119_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928175_2929126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	2959512	2998701	4112724	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2959512_2960463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960480_2960630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960583_2961480_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963757_2965983_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966147_2967236_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967192_2967846_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967893_2968691_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969222_2970173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970253_2971402_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971458_2972409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972507_2972813_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972841_2973276_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973277_2974522_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974518_2975229_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975243_2976155_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976517_2976922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976918_2977377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977383_2978292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978288_2979155_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979141_2979969_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979979_2981107_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982184_2983423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983464_2984727_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984733_2985486_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985537_2985723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985998_2986463_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986494_2987154_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987298_2989407_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989403_2990354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990457_2991078_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991181_2991922_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993056_2994181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994226_2994595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994836_2995787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996822_2997365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997562_2997733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997750_2998701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	3385247	3505492	4112724	tRNA,transposase	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3385247_3386198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386602_3387247_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387271_3387856_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387956_3388574_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388576_3390292_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390288_3390597_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390613_3391231_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391275_3391578_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391678_3392533_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392720_3392945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393114_3393387_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393804_3394212_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394581_3395376_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395476_3396712_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396780_3397797_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397808_3399185_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399181_3400378_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400374_3401913_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401909_3403169_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405109_3406060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406826_3407921_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407913_3409248_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409201_3409885_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409910_3411074_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3411070_3412072_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3412071_3412944_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412940_3413690_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413686_3414478_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414474_3415614_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415889_3416675_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416708_3417491_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417494_3417884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3419023_3419887_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3419922_3421011_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3421007_3421958_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422311_3425290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426216_3427095_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3428059_3429010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3430092_3431043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3431039_3431507_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3431549_3432320_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3432340_3433141_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3433151_3434561_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3434655_3435441_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3435680_3436697_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3436804_3437197_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3437334_3438015_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3438019_3438991_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3439086_3440037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3441541_3442243_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3442242_3443667_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3444736_3446077_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3446192_3447956_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3448067_3448946_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3449058_3449874_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3449877_3450129_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3450213_3451230_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3451560_3451782_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3454142_3455060_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3455557_3456766_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3456845_3458417_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3458534_3459470_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3459658_3460603_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3461170_3466888_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3466893_3468021_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3468076_3468703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3468974_3469991_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3470086_3470797_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3470793_3471783_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3471878_3473510_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3473512_3474250_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3474405_3475278_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3475627_3476767_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3476763_3477423_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3477494_3478127_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3478156_3478675_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3478685_3479795_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3479841_3480696_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3480697_3481600_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3482822_3483773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3485529_3486519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3486694_3487483_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3487479_3488511_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3488529_3489093_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3489148_3490669_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3490932_3491637_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3491644_3492373_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3492487_3492862_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3492904_3494194_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3494190_3495360_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3495356_3496196_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3496255_3497191_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3497203_3498154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3498252_3499215_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3499246_3499606_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3499730_3500633_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3500634_3502407_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3502441_3503218_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3504541_3505492_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	3520430	3578503	4112724	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3520430_3521381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3521509_3522643_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3522686_3523592_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3523594_3525295_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3525291_3526212_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3526219_3527197_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3527255_3528290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3530264_3530501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3530627_3531491_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3531579_3532401_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3532480_3533218_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3533214_3534207_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3534359_3534983_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3535027_3536176_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3538499_3539450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3539790_3540741_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3540839_3541790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3542086_3542584_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3542626_3544402_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3544409_3545276_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3545282_3546017_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3547186_3547981_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3548270_3548861_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3548894_3550223_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3550297_3551443_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3551554_3552553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3552515_3552950_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3554466_3555351_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3555347_3556553_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3556549_3557410_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3557522_3559313_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3559353_3559998_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3560019_3560328_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3560493_3561780_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3563213_3564164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3566115_3567330_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3567435_3568425_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3568421_3569030_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3569042_3569672_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3569668_3570289_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3570320_3571112_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3571963_3572419_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3572437_3573364_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3573417_3574704_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3575634_3576507_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3576503_3577454_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3577552_3578503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011761	Bordetella pertussis strain J073 chromosome, complete genome	4112724	4011792	4076704	4112724	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4011792_4012278_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4012366_4012504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4012496_4013477_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4013743_4014553_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4014592_4015273_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4015266_4015725_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4015736_4016099_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4016181_4016865_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4016920_4017229_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4017247_4017562_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4017558_4020033_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4020040_4021432_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4021428_4021614_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4021592_4022294_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4022290_4023112_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4023092_4024217_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4024209_4025229_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4025434_4026325_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4026569_4027361_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4027443_4027818_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4027795_4029205_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4029197_4030580_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4030914_4032519_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4032596_4033568_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4033578_4034505_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4034895_4035846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4036015_4037242_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4037441_4038308_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4038300_4039263_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4039363_4040314_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4040412_4041363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4041461_4042412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4042408_4043902_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4043898_4047006_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4047002_4050071_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4050067_4051318_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4051498_4052251_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4052292_4052937_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4052945_4053926_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4054025_4054769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4054851_4055199_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4055296_4056139_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4056183_4057071_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4057097_4057286_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4057383_4058841_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4058827_4060354_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4060372_4060840_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4060839_4061862_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4061982_4062723_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4062777_4063878_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4063879_4065070_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4065189_4066206_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4066524_4067196_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4067192_4068101_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4068312_4068960_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4072820_4073888_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4073898_4074708_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4074797_4075571_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4075571_4075736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4075753_4076704_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
