The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	0	59497	4113747	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	70134	123122	4113747	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	165943	226454	4113747	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190580_191054_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194124_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212205_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220104_223047_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	234386	287974	4113747	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_010929591.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268762_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279158_279305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279587_279728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281475_282330_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	391907	449416	4113747	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414475_415390_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415386_416046_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416135_417059_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417064_417520_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417516_418620_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418578_418848_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418807_420427_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420423_421482_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421611_422106_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422198_423176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423371_424577_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424573_426085_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426100_427414_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427604_427784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428193_428928_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432454_432853_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433263_433734_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433822_434167_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434266_435667_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437455_437974_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438084_438840_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439035_440268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440260_441046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441112_442084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442094_443072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443197_444370_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444396_445425_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445490_446684_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448465_449416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	591470	652661	4113747	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591470_592421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592917_593787_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593783_594605_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594804_595296_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595314_596388_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596434_597538_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597613_598234_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598254_598764_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598818_599070_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599133_600267_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600274_600661_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600657_603177_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603605_603944_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603940_604447_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604508_605309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605419_606361_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606454_607990_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609669_611520_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611523_612357_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612356_613298_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613549_614521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614662_616951_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617257_618166_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618220_619186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619260_620922_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620993_621704_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621670_621835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621852_622803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623501_623885_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623942_624545_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624562_624964_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625097_625991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625987_626569_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627363_628098_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628138_629188_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629335_629914_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630300_631278_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631371_635766_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635966_636815_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636973_637786_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637841_638792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638890_639691_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639752_640136_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640147_641581_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641787_642117_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642119_642869_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643051_643972_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644018_644231_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644253_644676_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644692_645793_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645889_647407_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647482_648322_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648343_649225_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649306_650401_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650694_651645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651719_652661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	657985	704176	4113747	transposase,tail,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657985_659011_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659051_659291_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659360_660950_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660949_661498_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661578_662151_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662169_663081_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663154_664123_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664245_665319_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665323_667144_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667220_668171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668259_668595_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668728_669379_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669400_670819_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670888_671644_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671612_672371_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672381_673263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673279_673987_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673989_674748_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674957_676700_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676692_677217_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677256_678051_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678218_679292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679390_680341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680592_680799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680870_681482_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682036_682288_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682280_682970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682987_683209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683226_684177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684816_685302_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685288_686566_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686568_687987_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688015_689071_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689076_689319_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689441_690044_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690472_691423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692097_692349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692411_692894_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692895_693096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693095_693491_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693487_693886_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693882_694305_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694312_694813_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695067_695586_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695595_695925_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695942_696233_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696258_698871_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698880_699240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699307_699841_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699837_700227_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700219_704176_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	710342	764272	4113747	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710342_712073_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712125_712554_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712556_713237_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713236_713695_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713731_714706_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714722_716039_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716070_716568_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716654_717344_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717343_718393_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718389_719184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719352_719703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719678_720236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721365_722316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724453_725683_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725685_727128_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727232_728378_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728409_729207_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729231_730791_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730787_733160_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733269_734373_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734372_735065_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735208_735910_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735894_736272_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737003_737954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738113_738986_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739326_739545_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739584_740964_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741005_742403_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742442_744095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744098_744983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744982_745924_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746002_747622_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747788_748604_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748671_749241_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749241_750192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750846_751944_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751977_753243_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753400_754351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754594_755185_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755200_757645_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757764_758736_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758867_759392_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759351_760302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760523_762719_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762791_763220_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763321_764272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	855150	904414	4113747	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855150_856101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856118_856673_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856674_857109_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857105_857540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857523_858327_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858343_859159_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859155_859971_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860117_860819_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860846_862805_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862887_863838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864058_864727_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864850_865957_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865969_869083_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869079_870573_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870587_871259_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871302_871797_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871937_872585_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872688_874737_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874733_876746_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876771_878106_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878214_879207_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879273_881358_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881382_882354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882482_883514_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883517_884669_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884839_885763_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885840_886665_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886861_887878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888074_889058_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890656_892045_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892075_893065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893175_894408_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894689_895490_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895512_897744_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898531_898978_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898999_899746_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899889_900867_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901500_902112_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902105_903323_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903463_904414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	914026	978966	4113747	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914026_914977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914973_916806_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917204_917864_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917957_918104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918212_918380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918391_919072_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919353_920070_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920084_921386_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923530_926419_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926642_927995_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928023_928545_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928541_929996_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930030_930279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930384_931260_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931285_932341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932353_933145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933177_934548_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935724_936675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936727_936949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937108_937321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937440_938559_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939064_939316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939428_940379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940375_940759_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940813_942628_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942777_943605_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943650_944631_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944627_944840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944836_946018_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946181_946916_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946917_949530_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949665_951579_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952194_952605_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952702_953788_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953886_954837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954833_955808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955932_956844_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957120_957513_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957642_958593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958622_958805_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959577_960759_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960974_961652_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961648_962374_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962499_963081_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963451_966133_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966132_967266_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967258_968344_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968430_969330_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969326_970655_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970669_971341_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971528_973244_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973245_973605_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973796_974111_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974153_975374_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975370_976312_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976308_977298_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977332_977917_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978015_978966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	998372	1049337	4113747	transposase	Enterococcus_phage(25.0%)	42	NA	NA
WP_010929591.1|998372_999323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999427_1000477_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000614_1001631_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003139_1003712_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003771_1004503_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004554_1005472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006279_1009459_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009455_1010838_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010907_1011159_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011304_1011919_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012105_1014220_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014295_1015147_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015143_1015770_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015766_1017521_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017813_1020519_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020531_1022193_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022205_1023996_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024217_1025393_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025435_1026386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026484_1027435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027533_1028274_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028468_1030505_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030522_1031533_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031650_1032844_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032873_1033647_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033643_1034834_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034859_1035798_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035794_1038143_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038297_1038939_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1039042_1040176_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1040268_1040421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040452_1041001_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1041019_1041505_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041682_1042621_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042623_1042941_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042986_1043931_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045611_1046262_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046315_1046651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046647_1047508_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047524_1047806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047879_1048143_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048386_1049337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	1061555	1119986	4113747	transposase,protease,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1061555_1062572_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1063360_1064410_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064406_1066050_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066046_1066934_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067074_1067548_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067537_1068560_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068556_1069984_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070921_1071938_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072270_1073206_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073255_1075136_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075202_1075547_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075691_1076828_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076824_1077898_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078055_1079492_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079582_1080224_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080559_1081576_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083516_1084467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085771_1087193_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087456_1088173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088257_1088575_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088615_1089029_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089030_1089390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089432_1090977_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091060_1091891_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091925_1093080_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093122_1093995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062826528.1|1094111_1096400_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097606_1098071_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098097_1099048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099065_1099203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099415_1100192_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100236_1101094_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101115_1102132_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102266_1103307_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103501_1105583_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105818_1107312_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107542_1108337_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108557_1109916_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109912_1110755_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110773_1112660_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112601_1112853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112897_1113530_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113548_1114151_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1114302_1115253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115833_1116541_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116899_1117886_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118025_1119039_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119035_1119986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	1319006	1387493	4113747	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319006_1319957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320725_1321364_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322253_1322700_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322781_1323483_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323483_1324251_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324247_1325486_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325485_1326412_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326514_1327630_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327645_1328596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328949_1329531_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329527_1330361_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330571_1331885_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332061_1332943_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332962_1333814_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333866_1334955_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335065_1336193_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336427_1337039_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337137_1338088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338309_1338687_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338834_1339332_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339328_1339856_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339989_1340805_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340817_1341999_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342046_1342940_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343066_1343537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343662_1344490_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344518_1345295_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345291_1345567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345581_1346046_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346057_1346759_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346868_1347369_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347451_1348630_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350257_1350593_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350780_1352229_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352286_1352631_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352737_1353277_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353369_1354320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354337_1354577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355058_1355490_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1355671_1356076_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357312_1357636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357638_1358526_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358558_1358984_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359055_1359409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359648_1360155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360193_1361525_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361584_1362400_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362396_1363251_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366313_1368857_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370223_1371978_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371974_1374095_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374099_1376295_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376291_1379633_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382435_1383386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383451_1383631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383747_1384503_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384489_1385635_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386542_1387493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	1447984	1503472	4113747	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447984_1448935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450136_1450583_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450575_1452051_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452047_1452803_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452795_1453806_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453795_1455472_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455784_1456117_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456130_1456526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456535_1456862_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1456858_1457185_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457111_1458134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458130_1458481_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458528_1458957_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458964_1460338_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460478_1460856_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461118_1462426_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462486_1463317_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463313_1463802_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463843_1465364_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465407_1465884_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466687_1469285_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469314_1470136_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470862_1471612_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471795_1472674_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472771_1473488_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473502_1474063_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474229_1474994_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475013_1475871_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475867_1477067_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477106_1478441_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478493_1480830_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480955_1481519_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481527_1482619_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482690_1483146_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483146_1483941_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483937_1485119_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485105_1485711_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485707_1486481_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486492_1487320_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487481_1489845_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489912_1490632_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490755_1491181_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1491215_1492166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492283_1493210_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493275_1494433_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494413_1494881_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495028_1495979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495995_1496430_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496419_1496770_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496966_1498121_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1498117_1499290_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499337_1500231_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500276_1500714_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500773_1501463_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501472_1502423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502521_1503472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	1598169	1658082	4113747	transposase,tRNA	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1598169_1598658_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598775_1599354_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599459_1599828_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599926_1600877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600883_1601996_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602682_1603885_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603920_1604067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1604088_1606749_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1606761_1610166_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610833_1613059_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613105_1613432_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613482_1614091_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614189_1615140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615238_1616189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616258_1617023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1617019_1617619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617722_1618574_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618633_1619260_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619256_1620207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620305_1621418_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621407_1622409_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622514_1624026_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624022_1625327_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625438_1625999_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626266_1626821_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627276_1627492_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627746_1630344_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630340_1631528_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1632187_1632802_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1632890_1634018_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634029_1634935_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635827_1636778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636959_1637712_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637780_1638440_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638436_1639165_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639177_1641457_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641481_1641685_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641726_1642359_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642494_1643412_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643408_1644122_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644359_1645130_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645134_1645734_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645978_1647469_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647527_1647812_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1647949_1648105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1648377_1649304_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649440_1650181_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650347_1651724_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651905_1652811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654462_1656265_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1656391_1657033_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1657131_1658082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	1703254	1752534	4113747	transposase	Brazilian_cedratvirus(25.0%)	41	NA	NA
WP_005013747.1|1703254_1704205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704263_1705037_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705029_1706586_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706582_1707533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708859_1709462_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709701_1710403_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710396_1711179_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711363_1712314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712412_1713150_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713339_1714098_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714144_1715134_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715311_1716280_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717819_1718788_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718796_1719738_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720211_1721222_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721212_1722727_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722723_1724070_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1724072_1725107_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725156_1726782_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727334_1728285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728389_1729337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729390_1731205_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731197_1731872_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1732001_1735076_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735089_1735389_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735703_1736327_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1736570_1737440_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737417_1738362_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738447_1739374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739486_1740266_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740256_1741453_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741483_1742434_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742655_1743345_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743409_1744165_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744216_1745209_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745218_1746172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746287_1747250_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748651_1749080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749076_1750027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1750320_1751058_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005012808.1|1751583_1752534_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	1992658	2062310	4113747	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992658_1995316_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995393_1996596_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996592_1997105_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997227_1997665_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997941_1998892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998990_1999941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|2000194_2002000_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2002113_2002281_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002344_2002581_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2002949_2004149_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005664_2006615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007066_2008068_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008240_2009098_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009094_2010357_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010457_2010832_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2010904_2012092_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012176_2012947_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013060_2013825_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013775_2015077_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2015073_2015880_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2017624_2018596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018752_2019265_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019423_2020398_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021398_2022193_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022218_2023025_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023135_2023726_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023736_2024915_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025017_2025392_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025644_2026976_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027042_2030273_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031763_2032510_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032594_2033056_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033093_2034152_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034114_2035944_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035983_2036556_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037980_2038802_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039120_2040443_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040802_2041438_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041397_2042348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043218_2044091_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044168_2045308_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045666_2046923_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046928_2047456_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047460_2048279_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048278_2049001_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049022_2049337_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049354_2050503_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050533_2051409_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051405_2052725_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052797_2053994_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2054004_2055492_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058086_2058986_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059123_2060089_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060187_2061138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061359_2062310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	2073806	2123202	4113747	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073806_2074757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075894_2076191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076365_2077718_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077860_2078877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080856_2081870_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2081956_2082862_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083018_2083363_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2083520_2083979_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083992_2086209_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086205_2087267_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087295_2088270_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088221_2089040_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089052_2089661_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2089835_2090231_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090249_2091689_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091717_2092065_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092083_2093034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2093686_2094637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094720_2096538_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096611_2097259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097271_2098201_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098370_2098835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099082_2099763_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099811_2101503_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2101518_2102070_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102066_2102438_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2102550_2103387_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103397_2103922_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104019_2104199_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2104328_2105303_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105433_2105790_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2105779_2106655_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106753_2107638_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107659_2108955_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109903_2110554_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2110641_2112162_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112419_2114285_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115330_2116281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2116298_2116439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2117253_2117613_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2117600_2119037_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119033_2119687_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2119683_2120877_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2120980_2122255_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2122251_2123202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	2134406	2175097	4113747	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2134406_2135357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2135455_2136406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2136365_2136779_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137063_2137363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2137772_2140055_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2140520_2140715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2140740_2142771_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2142790_2143003_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2143280_2143820_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2143933_2145229_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2145305_2146463_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2146646_2147546_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2147564_2148869_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2148834_2149941_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150028_2150265_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2150403_2151474_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2151477_2152833_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2152859_2154020_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154022_2154661_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2154662_2155949_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2156007_2157303_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2157309_2157816_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2157812_2158961_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2158988_2159414_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2159736_2162619_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2162711_2163467_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2164232_2165582_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2165680_2166631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2166729_2167680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2167753_2168227_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2168252_2169461_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2169457_2170231_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2170230_2170854_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171019_2171280_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2171583_2172165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2172231_2172486_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2172472_2175097_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	2202880	2316542	4113747	transposase,protease,tRNA	Lake_Baikal_phage(11.54%)	100	NA	NA
WP_010929577.1|2202880_2203831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204031_2204841_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2204965_2205916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205912_2206806_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206930_2207125_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207124_2207466_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2207475_2209338_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2209467_2209980_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209982_2210306_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210307_2210718_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210755_2211967_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211984_2212497_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212712_2213204_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213456_2215493_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2215570_2216773_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2216901_2217552_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219109_2220060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220630_2220843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220860_2221592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221626_2222268_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222260_2222929_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225141_2225918_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225939_2227097_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227093_2227525_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2227521_2228325_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2228338_2228740_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228806_2229778_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229843_2231067_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231294_2232245_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232368_2234822_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235010_2236315_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236419_2237073_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237075_2238386_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2238582_2239143_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239254_2239455_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239800_2240367_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240450_2240654_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240960_2241281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241322_2241604_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241678_2242935_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243317_2243647_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245217_2246039_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246038_2247178_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247184_2248081_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2248077_2250003_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250362_2252975_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253027_2255328_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255324_2256533_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2256794_2257169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257165_2258116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258214_2260209_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260268_2261234_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261223_2264085_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264087_2264594_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264698_2265907_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265908_2266847_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2267008_2267482_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2267478_2268429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2268527_2269478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2269588_2270029_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2270157_2271387_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2271425_2272247_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2272300_2273452_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2273543_2274032_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2276582_2279132_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2279202_2281776_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2282041_2282242_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2282273_2282435_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2282492_2282831_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2282979_2283930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2284028_2284979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2285753_2286422_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2286403_2288419_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2288601_2289351_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2289363_2290227_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2290230_2291646_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2291779_2292508_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2292646_2292847_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2293022_2293421_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2293444_2294845_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2294963_2295716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2296004_2296604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2296708_2297488_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2297484_2298369_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2298386_2299166_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2299150_2299909_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2300034_2300682_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2300949_2301966_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2302063_2303104_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2303238_2304531_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2305890_2306274_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2306291_2306879_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2306916_2307867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2307965_2308526_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2308522_2309068_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2309263_2310292_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2310332_2311673_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2311781_2312786_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2312892_2315493_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2315591_2316542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	2355655	2419233	4113747	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2355655_2356606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2356907_2357384_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2358007_2359645_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2359675_2360989_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2361122_2361440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2361540_2362863_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2362859_2363810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2363908_2364859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2365388_2366411_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2366439_2367270_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2367286_2368984_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2369048_2370125_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2370284_2371148_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2371178_2371748_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2371764_2372616_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2373673_2374555_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2374629_2375619_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2375681_2376632_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2376694_2377552_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2377611_2378100_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2379672_2380863_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2380859_2382446_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2382464_2383532_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2383636_2385181_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2385600_2387175_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2387282_2388299_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2388295_2389135_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2389139_2390777_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2390773_2391724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2391741_2391885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2391866_2393141_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2393170_2393461_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2393533_2394547_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2394566_2395829_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2395831_2396755_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2396751_2398245_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2398255_2399188_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2399369_2400695_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2400729_2402073_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2402145_2403666_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2403820_2404552_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2404619_2405960_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2405975_2406887_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2406877_2407471_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2407532_2407919_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2407930_2408401_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2408412_2409036_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2409056_2411804_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2418282_2419233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	2691219	2731888	4113747	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2691219_2692170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2692280_2692463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2692562_2693159_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2693342_2694434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2694933_2695344_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2695402_2695744_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2695749_2698167_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2698179_2699202_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2699276_2699636_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2699651_2699849_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2700184_2701135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2701329_2701779_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2701775_2702726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2702836_2704285_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2704399_2704681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2704784_2705735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2705979_2706693_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2706815_2707043_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2707337_2707976_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2708084_2709119_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2709115_2710066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2710481_2711006_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2711009_2711279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2711477_2712539_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2712622_2714257_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2714258_2715062_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2715090_2716050_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2716053_2717568_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2717604_2718609_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2719040_2719511_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2719546_2720158_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2720188_2720812_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2720892_2722425_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2722459_2723701_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2723744_2724776_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2724772_2725942_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2725935_2726616_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2726777_2727620_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2727782_2728754_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2728925_2729804_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2729826_2730897_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2730937_2731888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	2787353	2860223	4113747	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2787353_2787770_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2787880_2788513_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2788541_2788985_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2789006_2790098_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2790152_2790953_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2791088_2791709_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2791848_2792322_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2793461_2794412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2794408_2802070_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2802310_2806357_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2806669_2807251_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2807247_2808546_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2808625_2809654_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2809914_2810865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2810861_2811812_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2812128_2812734_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2812787_2814101_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2814175_2814646_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2814645_2815434_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2815444_2817097_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2817184_2818135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2819296_2819803_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2819799_2820564_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2820579_2820864_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820928_2821918_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2822089_2823019_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822990_2823677_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2823710_2824256_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2824300_2825566_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2825562_2826465_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2827646_2828591_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2828685_2830203_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2830244_2831873_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831980_2832862_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835974_2836349_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2836373_2836712_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2836755_2838390_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2838428_2839775_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2839882_2841304_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2841373_2841958_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2842060_2843011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843145_2844252_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844262_2845360_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845504_2846710_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846716_2847238_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2847234_2847726_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847722_2847974_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847954_2848440_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848575_2852037_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2852054_2852939_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852948_2853380_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853626_2854130_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2854207_2855608_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855682_2856558_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856554_2857562_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858029_2858335_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858425_2859016_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859206_2860223_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	2863366	2930177	4113747	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2863366_2864317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864415_2865366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2865362_2866157_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2866188_2866893_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2866967_2867768_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2867764_2868172_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2868168_2868810_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2868802_2870803_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2872063_2873395_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2873391_2874342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2876048_2876315_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2877022_2877361_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881914_2882517_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2882613_2883903_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883960_2884692_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2884688_2885492_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2885488_2886577_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2886573_2887503_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2887651_2888797_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2888818_2889769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2889786_2889945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2890099_2893921_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894077_2894746_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2894750_2896424_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896442_2897762_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2897766_2900082_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900137_2902306_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2902302_2907492_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907581_2907896_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908123_2908369_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908463_2908982_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909081_2910287_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910402_2911800_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911916_2912495_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912567_2913959_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914126_2915077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915357_2915978_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915974_2916388_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916384_2917428_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917483_2917672_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917681_2918446_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918536_2919193_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919284_2920043_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920068_2921670_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921870_2922875_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922975_2923239_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923356_2924133_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924723_2925674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928057_2929170_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929226_2930177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	2960562	2999751	4113747	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2960562_2961513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2961530_2961680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2961633_2962530_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964807_2967033_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967197_2968286_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968242_2968896_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968943_2969741_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970272_2971223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2971297_2972452_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972508_2973459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973557_2973863_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973891_2974326_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974327_2975572_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975568_2976279_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976293_2977205_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977567_2977972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977968_2978427_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2978433_2979342_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2979338_2980205_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980191_2981019_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981029_2982157_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983234_2984473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984514_2985777_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985783_2986536_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986587_2986773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987048_2987513_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987544_2988204_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988348_2990457_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990453_2991404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991507_2992128_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2992219_2992972_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994106_2995231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995276_2995645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995886_2996837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997872_2998415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998612_2998783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998800_2999751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	3386298	3506543	4113747	transposase,tRNA	Acinetobacter_phage(20.0%)	100	NA	NA
WP_023995489.1|3386298_3387249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3387653_3388298_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3388322_3388907_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3389007_3389625_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3389627_3391343_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3391339_3391648_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3391664_3392282_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3392326_3392629_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3392729_3393584_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3393771_3393996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3394165_3394438_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3394855_3395263_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3395632_3396427_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3396527_3397763_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3397831_3398848_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3398859_3400236_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3400232_3401429_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3401425_3402964_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3402960_3404220_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3406160_3407111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3407877_3408972_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3408964_3410299_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3410252_3410936_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3410961_3412125_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3412121_3413123_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3413122_3413995_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3413991_3414741_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3414737_3415529_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3415525_3416665_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3416940_3417726_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3417759_3418542_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3418545_3418935_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3420074_3420938_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3420973_3422062_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3422058_3423009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3423362_3426341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3427267_3428146_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3429110_3430061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3431143_3432094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3432090_3432558_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3432600_3433371_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3433391_3434192_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3434202_3435612_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3435706_3436492_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3436731_3437748_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3437855_3438248_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3438385_3439066_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3439070_3440042_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3440137_3441088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3442592_3443294_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3443293_3444718_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3445787_3447128_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3447243_3449007_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3449118_3449997_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3450109_3450925_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3450928_3451180_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3451264_3452281_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3452611_3452833_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3455193_3456111_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3456608_3457817_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3457896_3459468_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3459585_3460521_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3460709_3461654_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3462221_3467939_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3467944_3469072_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3469127_3469754_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3470025_3471042_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3471137_3471848_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3471844_3472834_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3472929_3474561_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3474563_3475301_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3475456_3476329_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3476597_3477818_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3477814_3478474_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3478545_3479178_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3479207_3479726_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3479736_3480846_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3480892_3481747_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3481748_3482651_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3483873_3484824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3486580_3487570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3487566_3487725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3487745_3488534_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3488530_3489562_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3489580_3490144_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3490199_3491720_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3491983_3492688_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3492695_3493433_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3493538_3493913_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3493955_3495245_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3495241_3496411_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3496407_3497247_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3497306_3498242_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3498254_3499205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3499303_3500266_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3500297_3500657_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3500781_3501684_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3501685_3503458_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3503492_3504269_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3505592_3506543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	3521481	3579554	4113747	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3521481_3522432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3522560_3523694_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3523737_3524643_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3524645_3526346_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3526342_3527263_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3527270_3528248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3528306_3529341_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3531315_3531552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3531678_3532542_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3532630_3533452_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3533531_3534269_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3534265_3535258_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3535371_3536034_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3536078_3537227_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3539550_3540501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3540841_3541792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3541890_3542841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3543137_3543635_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3543677_3545453_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3545460_3546327_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3546333_3547068_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3548237_3549032_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3549321_3549912_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3549945_3551274_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3551348_3552494_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3552605_3553604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3553566_3554001_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3555517_3556402_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3556398_3557604_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3557600_3558461_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3558573_3560364_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3560404_3561070_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3561070_3561379_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3561544_3562831_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3564264_3565215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3567166_3568381_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3568486_3569476_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3569472_3570081_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3570093_3570723_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3570719_3571340_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3571371_3572163_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3573014_3573470_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3573488_3574415_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3574468_3575755_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3576685_3577558_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3577554_3578505_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3578603_3579554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011760	Bordetella pertussis strain J072 chromosome, complete genome	4113747	4035918	4089350	4113747	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4035918_4036869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4037038_4038265_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4038464_4039331_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4039323_4040286_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4040386_4041337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4041435_4042386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4042484_4043435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4043431_4044925_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4044921_4048029_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4048025_4051094_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4051090_4052341_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4052521_4053283_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4053315_4053966_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4053968_4054808_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4055048_4055792_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4055874_4056222_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4056319_4057162_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4057206_4058094_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4058120_4058309_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4058406_4059864_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4059850_4061377_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4061395_4061863_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4061862_4062885_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4063005_4063725_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4063800_4064901_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4064902_4066093_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4066212_4067229_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4067547_4068219_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4068215_4069124_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4069335_4069983_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4073834_4074911_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4074921_4075731_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4075820_4076594_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4076594_4076759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4076776_4077727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4077615_4078638_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4078627_4079782_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4079821_4081234_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4081358_4082225_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4082226_4083051_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4083047_4083809_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4083889_4084576_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4084749_4085757_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4085753_4086533_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4086590_4087853_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|4088399_4089350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
