The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	0	59497	4109543	transposase,tRNA	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	70134	123122	4109543	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	165944	226455	4109543	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165944_166895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168338_169241_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169218_169848_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170130_171561_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171594_172224_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172272_173880_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173904_174588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174669_175146_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175352_176303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177418_177946_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178037_178853_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178913_179648_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179685_181764_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182013_182286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182387_183473_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183476_185381_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185377_189052_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189112_189676_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189683_190106_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190133_190553_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190581_191028_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191154_191652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191806_194077_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194152_195358_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195456_196407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196509_197145_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197141_198035_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198429_199530_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199611_199986_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200045_202910_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203054_203795_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203864_205076_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205104_206073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206686_207637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207793_208117_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208221_209262_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209267_210047_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210092_210389_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210414_210690_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210746_211391_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211390_212077_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212275_213058_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213108_213834_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213865_215215_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215326_216259_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216716_219512_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220105_222949_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223119_223839_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223877_224426_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224580_225480_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225504_226455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	234387	287975	4109543	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234387_235338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235424_236375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236371_237322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237420_238218_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239167_239578_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240599_241343_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241386_242430_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242600_244703_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246113_247070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247088_247580_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247576_248932_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248932_249631_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249627_250329_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250581_251631_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251736_252678_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252674_254564_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254650_255289_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255431_256817_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256747_257284_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257435_258827_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258843_259824_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259959_260943_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261007_261907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262013_263768_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263775_264900_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264913_265894_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266624_267575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268134_268680_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268805_270383_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270398_271553_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271566_271692_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271688_273440_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273436_275116_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275178_275727_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276869_277148_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278191_279142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279128_279344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279419_279581_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280247_280697_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280706_281318_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281476_282325_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282350_283733_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283797_284439_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284578_285037_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285061_285838_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285891_287028_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287024_287975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	391908	449417	4109543	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391908_392859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392995_393913_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393909_394158_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394154_395360_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395432_396428_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396450_397671_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397667_398312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400042_400852_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401156_402110_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402208_403192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403118_403820_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403868_404639_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404635_405814_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405981_407688_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407684_408581_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408621_410211_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410260_411253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411321_411921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412381_413362_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879566.1|413437_414388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414476_415391_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415387_416047_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416136_417060_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417065_417521_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417517_418621_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418579_418849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418808_420428_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420424_421483_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421612_422107_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422199_423177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423372_424578_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424574_426086_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426101_427415_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427605_427785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428194_428929_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431373_432324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432455_432854_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433264_433735_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433823_434168_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434267_435668_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437456_437975_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438085_438841_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439036_440269_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440261_441047_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441113_442085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442095_443073_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443198_444371_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444397_445426_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445491_446685_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448466_449417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	590422	651612	4109543	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590422_591373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591848_592739_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592735_593557_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593756_594248_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594266_595340_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595386_596490_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596565_597186_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597206_597716_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597770_598022_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598085_599219_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599226_599613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599609_602129_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602557_602896_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602892_603399_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603460_604261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604371_605313_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605406_606942_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608621_610472_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610475_611309_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611308_612250_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612501_613473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613614_615903_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616208_617117_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617171_618137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618211_619873_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619944_620655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620621_620786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620803_621754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622452_622836_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622893_623496_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623513_623915_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624030_624942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624938_625520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626314_627049_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627089_628139_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628286_628865_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629251_630229_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630322_634717_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634917_635766_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635924_636737_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636792_637743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637841_638642_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638703_639087_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639098_640451_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640738_641068_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641070_641820_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642002_642923_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642969_643182_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643204_643627_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643643_644744_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644840_646358_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647294_648167_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648257_649352_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649645_650596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650670_651612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	656936	703127	4109543	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656936_657962_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658002_658242_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660529_661102_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661120_662032_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662105_663074_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663196_664270_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664274_666095_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666171_667122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667210_667546_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667679_668330_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669839_670595_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673908_675651_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675643_676168_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676207_677002_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678341_679292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679543_679750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679821_680433_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680987_681239_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681231_681921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681938_682160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682177_683128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683767_684253_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684239_685517_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685519_686938_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686966_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689423_690374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691858_692047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692833_693256_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693263_693764_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694018_694537_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694546_694876_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694893_695184_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698258_698792_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698788_699178_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699170_703127_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	709293	763222	4109543	transposase,tRNA	Planktothrix_phage(50.0%)	45	NA	NA
WP_003814636.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711076_711505_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712682_713657_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713673_714990_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715021_715519_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716294_717344_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717340_718135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718629_719187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720316_721267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723404_724634_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724636_726079_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726183_727329_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727360_728158_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728182_729742_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729738_732111_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732220_733324_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733323_734016_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734159_734861_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734845_735223_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735954_736905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737064_737937_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738277_738496_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738535_739915_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739956_741354_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741393_743046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743049_743934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743933_744875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744953_746573_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746739_747555_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747622_748192_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748192_749143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750928_752194_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752351_753302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754151_756596_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756715_757687_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757818_758343_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758302_759253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	885811	1026379	4109543	transposase	Bacillus_phage(11.11%)	114	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906808_907015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957572_957755_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959924_960602_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960598_961324_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961449_962031_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962401_965083_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965085_966216_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966208_967294_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967380_968280_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968276_969605_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969619_970291_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970478_972194_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972195_972555_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972746_973061_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973103_974324_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974320_975262_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975258_976248_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976282_976867_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977996_978908_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978968_980114_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980133_981048_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981119_981869_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981868_982798_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983041_984868_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984950_985592_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985781_986816_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988652_989717_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990514_991423_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992910_994185_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994338_994719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994726_995599_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995904_996285_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996495_997221_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011049_1013110_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1025428_1026379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	1047330	1097992	4109543	transposase,tRNA,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048579_1049317_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049752_1050076_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050110_1050671_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050791_1051667_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051679_1052627_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052728_1053022_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053048_1055106_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055120_1055621_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055694_1057401_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058264_1059317_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059369_1059759_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059767_1060400_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010929632.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062346_1063354_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063350_1064994_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064990_1065878_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066018_1066492_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066481_1067504_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071214_1072150_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072199_1074080_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074146_1074491_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1082460_1083411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084715_1086137_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086400_1087117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087201_1087519_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087559_1087973_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087974_1088334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088376_1089921_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090004_1090835_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090869_1092024_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092066_1092939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093055_1095344_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096550_1097015_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097041_1097992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	1113246	1178318	4109543	transposase,tRNA	Catovirus(25.0%)	46	NA	NA
WP_010929591.1|1113246_1114197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114777_1115485_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115843_1116830_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116969_1117983_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117979_1118930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118947_1119088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119042_1119501_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119537_1120851_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120868_1121240_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121236_1122700_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122840_1123569_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123550_1126400_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126612_1127563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127730_1128555_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128554_1129433_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130337_1131453_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131481_1132276_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132272_1134138_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134216_1134849_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134845_1135148_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135190_1136711_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1136717_1137473_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1137502_1138607_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1138709_1140410_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1140391_1141369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141378_1142659_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1142651_1143347_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143380_1144208_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1144489_1147720_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1148455_1152382_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1154281_1156078_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156077_1157046_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157115_1157961_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158028_1158583_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158629_1159580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159678_1160311_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160475_1162758_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162912_1165609_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165734_1166223_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168633_1171504_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171549_1172764_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172993_1174421_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174518_1175610_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175622_1176381_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176468_1177371_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177367_1178318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	1317952	1386439	4109543	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317952_1318903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319671_1320310_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321199_1321646_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321727_1322429_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322429_1323197_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323193_1324432_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324431_1325358_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325460_1326576_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326591_1327542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327895_1328477_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328473_1329307_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329517_1330831_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331007_1331889_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331908_1332760_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332812_1333901_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334011_1335139_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335373_1335985_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336083_1337034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337255_1337633_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337780_1338278_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338274_1338802_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338935_1339751_+	exported protein	NA	NA	NA	NA	NA
WP_077123296.1|1339763_1340945_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340992_1341886_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342012_1342483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342608_1343436_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343464_1344241_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344237_1344513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344527_1344992_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345003_1345705_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345814_1346315_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346397_1347576_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349203_1349539_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349726_1351175_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351232_1351577_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351683_1352223_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352315_1353266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1353283_1353523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354004_1354436_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354617_1355022_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356258_1356582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356584_1357472_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357504_1357930_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358001_1358355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358594_1359101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359139_1360471_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360530_1361346_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361342_1362197_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365259_1367803_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_077123297.1|1369169_1370924_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370920_1373041_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373045_1375241_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375237_1378579_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381381_1382332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382397_1382577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382693_1383449_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383435_1384581_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385488_1386439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	1446927	1502415	4109543	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446927_1447878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449079_1449526_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449518_1450994_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450990_1451746_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451738_1452749_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452738_1454415_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454727_1455060_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455073_1455469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455478_1455805_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455801_1456128_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456054_1457077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457073_1457424_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457471_1457900_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457907_1459281_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459421_1459799_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460061_1461369_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461429_1462260_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462256_1462745_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462786_1464307_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464350_1464827_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465630_1468228_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468257_1469079_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469805_1470555_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470738_1471617_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471714_1472431_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472445_1473006_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473172_1473937_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473956_1474814_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474810_1476010_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476049_1477384_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477436_1479773_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479898_1480462_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480470_1481562_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481633_1482089_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482089_1482884_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482880_1484062_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484048_1484654_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484650_1485424_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485435_1486263_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486424_1488788_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488855_1489575_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489698_1490124_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490158_1491109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491226_1492153_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492218_1493376_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493356_1493824_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1493971_1494922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494938_1495373_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495362_1495713_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495909_1497064_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497060_1498233_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498280_1499174_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499219_1499657_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499716_1500406_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500415_1501366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1501464_1502415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	1597112	1657024	4109543	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1597112_1597601_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1597718_1598297_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598402_1598771_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598869_1599820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599826_1600939_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601625_1602828_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1603031_1605692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1605704_1609109_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609776_1612002_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612048_1612375_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612425_1613034_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613132_1614083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1614181_1615132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615201_1615966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1615962_1616499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1616665_1617517_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1617576_1618203_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618199_1619150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619248_1620361_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620350_1621352_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621457_1622969_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622965_1624270_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624381_1624942_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625209_1625764_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626219_1626435_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1626689_1629287_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629283_1630471_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1631129_1631744_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1631832_1632954_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632971_1633877_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634769_1635720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635901_1636654_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1636722_1637382_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637378_1638107_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638119_1640399_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640423_1640627_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1640668_1641301_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641436_1642354_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642350_1643064_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643301_1644072_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644076_1644676_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644920_1646411_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646469_1646754_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1647319_1648246_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648382_1649123_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649289_1650666_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650847_1651753_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653404_1655207_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1655324_1655975_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656073_1657024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	1702196	1757787	4109543	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1702196_1703147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1703205_1703979_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1703971_1705528_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1705524_1706475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1707801_1708404_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1708643_1709345_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1709338_1710121_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1710305_1711256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1711354_1712092_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1712281_1713040_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1713086_1714076_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1714253_1715222_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1716761_1717730_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1717738_1718680_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1719153_1720164_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1720154_1721669_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1721665_1723012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1723014_1724049_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1724098_1725724_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1726276_1727227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1727331_1728279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1728332_1730147_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1730139_1730814_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1730943_1734018_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1734031_1734331_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1734645_1735269_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1735512_1736382_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1736359_1737304_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1737389_1738316_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1738428_1739208_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1739198_1740395_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1740425_1741376_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1741597_1742287_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1742351_1743107_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1743158_1744151_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1744160_1745114_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1745229_1746192_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1747593_1748022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1748018_1748969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1749262_1749985_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1750423_1751611_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1751614_1751965_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1753714_1754686_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1754699_1755413_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1755417_1756335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1756441_1756738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1756836_1757787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	1990551	2060203	4109543	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1990551_1993209_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1993286_1994489_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1994485_1994998_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1995120_1995558_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1995834_1996785_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1996883_1997834_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1997997_1999893_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2000006_2000174_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2000237_2000474_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2000842_2001994_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2003557_2004508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2004959_2005961_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2006133_2006991_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2006987_2008250_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2008350_2008725_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2008797_2009985_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2010069_2010840_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2010953_2011718_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2011668_2012970_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2012966_2013773_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2015517_2016489_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2016645_2017158_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2017316_2018291_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2019291_2020086_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2020111_2020918_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2021028_2021619_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2021629_2022808_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2022910_2023285_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2023537_2024869_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2024935_2028166_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2029656_2030403_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2030487_2030949_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2030986_2032045_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2032007_2033837_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2033876_2034449_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2035873_2036695_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2037013_2038336_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2038695_2039331_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2039290_2040241_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2041111_2041984_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2042061_2043201_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2043559_2044816_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2044821_2045349_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2045353_2046172_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2046171_2046894_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2046915_2047230_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2047247_2048396_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2048426_2049302_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2049298_2050618_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2050690_2051887_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2051897_2053385_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2055979_2056879_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2057016_2057982_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2058080_2059031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2059252_2060203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2071699	2121095	4109543	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2071699_2072650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2073787_2074084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2074258_2075611_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2075753_2076770_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2078749_2079763_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2079849_2080755_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2080911_2081256_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2081413_2081872_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2081885_2084102_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2084098_2085160_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2085188_2086163_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2086114_2086933_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2086945_2087554_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2087728_2088124_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2088142_2089582_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2089610_2089958_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2089976_2090927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2091579_2092530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2092613_2094431_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2094504_2095152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2095164_2096094_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2096263_2096728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2096975_2097656_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2097704_2099396_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2099411_2099963_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2099959_2100331_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2100443_2101280_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2101290_2101815_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2101912_2102092_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2102221_2103196_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2103326_2103683_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2103672_2104548_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2104646_2105531_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2105552_2106848_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2107796_2108447_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2108534_2110055_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2110312_2112178_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2113223_2114174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2114191_2114332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2115146_2115506_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2115493_2116930_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2116926_2117580_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2117576_2118770_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2118873_2120148_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2120144_2121095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2132299	2172990	4109543	protease,transposase,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2132299_2133250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2133348_2134299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2134258_2134672_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2134956_2135256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2135665_2137948_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2138633_2140664_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2140683_2140896_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2141173_2141713_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2141826_2143122_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2143198_2144356_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2144539_2145439_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2145457_2146762_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2146727_2147834_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2147921_2148158_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2148296_2149367_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2149370_2150726_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2150752_2151910_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2151915_2152554_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2152555_2153851_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2153900_2155187_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2155202_2155709_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2155705_2156854_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2156881_2157307_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2157629_2160512_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2160604_2161360_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2162125_2163475_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2163573_2164524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2164622_2165573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2165646_2166120_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2166145_2167354_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2167350_2168124_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2168123_2168747_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2168912_2169173_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2169476_2170058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2170124_2170379_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2170365_2172990_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2200773	2266322	4109543	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2200773_2201724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2201924_2202734_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2202858_2203809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2203805_2204699_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2204823_2205018_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2205017_2205359_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2205368_2207231_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2207360_2207873_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2207875_2208199_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2208200_2208611_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2208648_2209860_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2209877_2210390_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2210605_2211097_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2211349_2213386_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2213463_2214666_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2214794_2215445_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2217002_2217953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2218523_2218736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2218753_2219485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2219519_2220161_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2220153_2220822_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2223034_2223811_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2223832_2224990_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2224986_2225418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2225414_2226212_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2226231_2226633_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2226699_2227671_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2227736_2228960_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2229187_2230138_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2230261_2232715_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2232903_2234208_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2234312_2234966_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2234968_2236279_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2236457_2237036_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2237147_2237348_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2237693_2238260_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2238343_2238547_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2238853_2239174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2239215_2239497_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2239571_2240828_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2241210_2241540_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2243110_2243932_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2243931_2245071_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2245077_2245974_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2245988_2247896_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2248255_2250868_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2250920_2253221_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2253217_2254426_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2254687_2255062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2255058_2256009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2256107_2258102_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2258161_2259127_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2259116_2261978_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2261980_2262487_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2262591_2263800_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2263801_2264740_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2264901_2265375_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2265371_2266322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2352499	2416077	4109543	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2352499_2353450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2353751_2354228_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2354851_2356489_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2356519_2357833_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2357966_2358284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2358384_2359707_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2359703_2360654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2360752_2361703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2362232_2363255_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2363283_2364114_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2364130_2365828_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2365892_2366969_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2367128_2367992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2368022_2368592_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2368608_2369460_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2370517_2371399_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2371473_2372463_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2372525_2373476_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2373538_2374396_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2374455_2374944_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2376516_2377707_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2377703_2379290_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2379308_2380376_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2380480_2382025_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2382444_2384019_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2384135_2385143_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2385139_2385979_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2385983_2387621_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2387617_2388568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2388585_2388729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2388710_2389985_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2390014_2390305_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2390377_2391391_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2391410_2392673_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2392675_2393599_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2393595_2395089_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2395099_2396032_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2396213_2397539_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2397573_2398929_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2398989_2400510_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2400664_2401396_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2401493_2402804_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2402819_2403731_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2403721_2404315_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2404376_2404763_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2404774_2405245_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2405256_2405880_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2405900_2408648_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2415126_2416077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2536225	2601945	4109543	protease,transposase,tRNA	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2536225_2538169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2538165_2539086_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539105_2539693_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2539685_2540576_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2540572_2541334_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2541339_2542224_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2542246_2544040_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2544170_2545658_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2545695_2546754_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2546753_2547254_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547266_2547866_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2547862_2548363_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548364_2549594_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2549783_2550023_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550205_2550958_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2550959_2551895_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2551976_2552963_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2552962_2554021_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554077_2554260_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554311_2554905_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555013_2555613_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2555609_2556320_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556321_2557149_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2558965_2560207_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560218_2560992_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561018_2561969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562067_2562850_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2562938_2564165_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2564890_2566276_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566294_2566900_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2566896_2568753_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2568749_2569550_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569564_2570758_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2570825_2571800_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2571922_2573146_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573256_2575461_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2575755_2576415_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576422_2576629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2576967_2577723_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2577993_2578509_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2578781_2579099_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579286_2579523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2579813_2581169_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581215_2582556_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582657_2583290_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583289_2585659_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585691_2586651_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586637_2587324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587320_2587653_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2587768_2588719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2588817_2589768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2589764_2591831_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2591830_2592103_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2592797_2592887_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2592886_2594671_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2594694_2596860_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2596870_2597470_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600290_2600986_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2600994_2601945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2688062	2728731	4109543	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688062_2689013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689123_2689306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689405_2690002_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690185_2691277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691776_2692187_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2692245_2692575_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2692592_2695010_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695022_2696045_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696119_2696479_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696494_2696692_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697027_2697978_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698172_2698622_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698618_2699569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2699679_2701128_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2701242_2701488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701627_2702578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702822_2703536_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703658_2703886_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704180_2704819_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704927_2705962_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705958_2706909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707324_2707849_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707852_2708122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708320_2709382_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709465_2711100_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711101_2711905_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711933_2712893_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712896_2714411_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714447_2715452_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2715883_2716354_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716389_2717001_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717031_2717655_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717735_2719268_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2719302_2720520_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720587_2721619_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721615_2722785_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2722778_2723459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2723620_2724463_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724625_2725597_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725768_2726647_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726669_2727740_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727780_2728731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2784196	2857066	4109543	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2784196_2784613_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784723_2785356_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785384_2785828_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785849_2786941_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2786995_2787796_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787931_2788552_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2788691_2789165_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790304_2791255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791251_2798913_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799153_2803200_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803512_2804094_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804090_2805389_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805468_2806497_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2806757_2807708_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807704_2808655_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808971_2809577_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809630_2810944_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811018_2811489_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811488_2812277_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812287_2813940_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814027_2814978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816139_2816646_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816642_2817407_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817422_2817707_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817771_2818761_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818932_2819862_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819833_2820520_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820553_2821099_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821143_2822409_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822405_2823308_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824489_2825434_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825528_2827046_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827087_2828716_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828823_2829705_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832817_2833192_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833216_2833555_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833598_2835233_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835271_2836618_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836725_2838147_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838216_2838801_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838903_2839854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839988_2841095_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841105_2842203_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842347_2843553_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843559_2844081_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844077_2844560_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844565_2844817_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844797_2845283_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845418_2848880_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848897_2849782_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849791_2850223_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850469_2850973_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851050_2852451_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852525_2853401_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853397_2854405_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854872_2855178_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855268_2855859_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856049_2857066_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2860209	2927021	4109543	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_010929956.1|2860209_2861160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861258_2862209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862205_2863000_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863031_2863736_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863810_2864611_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864607_2865015_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865011_2865653_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865645_2867646_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868906_2870238_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870234_2871185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872891_2873158_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873865_2874204_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878758_2879361_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879457_2880747_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880804_2881536_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881532_2882336_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882332_2883421_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883417_2884347_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884495_2885641_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885662_2886613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886630_2886789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886943_2890765_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890921_2891590_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891594_2893268_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893286_2894606_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894610_2896926_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896981_2899150_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899146_2904327_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904425_2904740_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904967_2905213_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905307_2905826_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905925_2907131_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907246_2908644_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908760_2909339_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909411_2910803_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910970_2911921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912201_2912822_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912818_2913232_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913228_2914272_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914327_2914516_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914525_2915290_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915380_2916037_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916128_2916887_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916912_2918514_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918714_2919719_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919819_2920083_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920200_2920977_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921567_2922518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924901_2926014_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926070_2927021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	2957406	2996595	4109543	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2957406_2958357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2958374_2958524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958477_2959374_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961651_2963877_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964041_2965130_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965086_2965740_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965787_2966585_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967116_2968067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968147_2969296_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969352_2970303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970401_2970707_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970735_2971170_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971171_2972416_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972412_2973123_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973137_2974049_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974411_2974816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974812_2975271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975277_2976186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976182_2977049_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977035_2977863_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977873_2979001_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980078_2981317_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981358_2982621_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982627_2983380_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983431_2983617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983892_2984357_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984388_2985048_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985192_2987301_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987297_2988248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988351_2988972_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989075_2989816_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990950_2992075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992120_2992489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992730_2993681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994716_2995259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995456_2995627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995644_2996595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	3382093	3502338	4109543	transposase,tRNA	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3382093_3383044_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383448_3384093_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384117_3384702_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384802_3385420_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385422_3387138_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387134_3387443_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387459_3388077_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388121_3388424_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388524_3389379_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389566_3389791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389960_3390233_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390650_3391058_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391427_3392222_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392322_3393558_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393626_3394643_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394654_3396031_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396027_3397224_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397220_3398759_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398755_3400015_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401955_3402906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403672_3404767_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404759_3406094_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406047_3406731_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3406756_3407920_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3407916_3408918_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408917_3409790_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409786_3410536_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410532_3411324_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411320_3412460_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412735_3413521_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413554_3414337_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414340_3414730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415869_3416733_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416768_3417857_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417853_3418804_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419157_3422136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423062_3423941_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3424905_3425856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3426938_3427889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427885_3428353_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428395_3429166_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429186_3429987_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429997_3431407_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431501_3432287_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432526_3433543_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433650_3434043_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434180_3434861_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434865_3435837_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435932_3436883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3438387_3439089_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3439088_3440513_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3441582_3442923_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3443038_3444802_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444913_3445792_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445904_3446720_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446723_3446975_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447059_3448076_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448406_3448628_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450988_3451906_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452403_3453612_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453691_3455263_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455380_3456316_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456504_3457449_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458016_3463734_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463739_3464867_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464922_3465549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465820_3466837_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466932_3467643_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467639_3468629_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468724_3470356_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470358_3471096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471251_3472124_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472473_3473613_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473609_3474269_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474340_3474973_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475002_3475521_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475531_3476641_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476687_3477542_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477543_3478446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479668_3480619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482375_3483365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483540_3484329_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484325_3485357_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485375_3485939_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485994_3487515_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487778_3488483_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488490_3489219_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489333_3489708_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489750_3491040_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491036_3492206_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492202_3493042_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493101_3494037_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494049_3495000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495098_3496061_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496092_3496452_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496576_3497479_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497480_3499253_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499287_3500064_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501387_3502338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	3517276	3575349	4109543	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517276_3518227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518355_3519489_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519532_3520438_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520440_3522141_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522137_3523058_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523065_3524043_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524101_3525136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3527110_3527347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3527473_3528337_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528425_3529247_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529326_3530064_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530060_3531053_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3531205_3531829_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531873_3533022_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535345_3536296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536636_3537587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537685_3538636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538932_3539430_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539472_3541248_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541255_3542122_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542128_3542863_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544032_3544827_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545116_3545707_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545740_3547069_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547143_3548289_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548400_3549399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549361_3549796_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551312_3552197_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552193_3553399_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553395_3554256_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554368_3556159_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3556199_3556844_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556865_3557174_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557339_3558626_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560059_3561010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562961_3564176_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564281_3565271_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565267_3565876_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565888_3566518_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566514_3567135_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567166_3567958_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568809_3569265_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569283_3570210_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570263_3571550_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572480_3573353_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573349_3574300_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574398_3575349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011756	Bordetella pertussis strain J027 chromosome, complete genome	4109543	4008611	4073523	4109543	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4008611_4009097_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009185_4009323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009315_4010296_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4010562_4011372_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011411_4012092_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012085_4012544_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4012555_4012918_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013000_4013684_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4013739_4014048_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014066_4014381_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014377_4016852_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4016859_4018251_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018247_4018433_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018411_4019113_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019109_4019931_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019911_4021036_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021028_4022048_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4022253_4023144_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023388_4024180_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024262_4024637_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4024614_4026024_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026016_4027399_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4027733_4029338_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4029415_4030387_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030397_4031324_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4031714_4032665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032834_4034061_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034260_4035127_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035119_4036082_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036182_4037133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037231_4038182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038280_4039231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039227_4040721_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040717_4043825_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043821_4046890_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046886_4048137_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4048317_4049070_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4049111_4049756_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4049764_4050745_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050844_4051588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4051670_4052018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052115_4052958_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053002_4053890_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053916_4054105_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054202_4055660_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055646_4057173_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057191_4057659_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4057658_4058681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058801_4059542_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4059596_4060697_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060698_4061889_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062008_4063025_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063343_4064015_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064011_4064920_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065131_4065779_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4069639_4070707_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070717_4071527_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4071616_4072390_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4072390_4072555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4072572_4073523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
