The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	27282	70036	4106503	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	232666	307010	4106503	transposase	uncultured_Mediterranean_phage(15.38%)	55	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268689.1|250561_250738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	489373	607268	4106503	tRNA,transposase	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490422_491373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494549_495362_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495398_495725_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495729_496290_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498552_499929_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502319_502709_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503170_504121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505166_506039_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509254_509710_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512643_513252_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514343_515558_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517509_518460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519893_521180_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|521654_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524263_525124_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526322_527207_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529120_530119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530230_531376_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536397_537264_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539089_539587_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539883_540834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542223_543174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545497_546646_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|546690_547353_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548455_549193_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|549272_550094_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553383_554418_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558081_558987_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559030_560164_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560292_561243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561341_563411_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568081_568504_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568513_569914_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569956_570862_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570960_572502_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572536_573076_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573088_573559_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574055_574937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575009_575330_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|576181_577132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579266_581039_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583519_584470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584482_585418_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586313_587483_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587479_588769_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|589291_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592580_593144_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594190_594979_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|594999_595158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|595154_596144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597900_598851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069128.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602998_603517_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603546_604179_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|604906_606127_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	611682	675515	4106503	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611682_612699_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612970_613597_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|613652_614780_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614785_620503_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626613_627531_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629891_630113_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630443_631460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631544_631796_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633717_635481_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638006_639431_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639430_640132_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641636_642587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642682_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643658_644339_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644476_644869_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644976_645993_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646232_647018_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647112_648522_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649353_650124_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650630_651581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658666_659617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659613_660702_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660737_661601_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|662740_663130_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|663133_663916_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663949_664735_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665010_666150_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666146_666938_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669550_670714_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|670739_671423_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671376_672711_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674564_675515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	694426	771735	4106503	integrase,tRNA,protease,transposase	Bacillus_phage(20.0%)	58	741563:741581	761451:761469
WP_023995489.1|694426_695377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695475_696951_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703758_705084_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706687_707185_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|708239_708677_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708800_709469_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710197_711301_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|711403_712681_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713719_715090_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719313_720468_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720464_721595_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726971_727682_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727678_729001_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729080_731042_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735209_736889_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738034_738862_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740743_741343_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741391_742291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742499_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743572_744187_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744315_744912_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|749797_752917_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752918_755870_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755885_757097_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|757280_758231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758247_758742_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759546_760458_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761607_762558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762976_765541_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765585_767439_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|767771_769343_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|770611_770767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|770784_771735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	1028122	1121110	4106503	transposase	Bacillus_virus(30.0%)	86	NA	NA
WP_005012067.1|1028122_1029073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1029175_1029838_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1029932_1030103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1030455_1031457_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1031459_1032656_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1032676_1033480_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1033560_1033857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1033887_1034451_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1034491_1035349_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1035356_1036106_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1036127_1037000_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1037028_1037808_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1037841_1038639_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1041293_1041686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1041679_1042540_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1042543_1043506_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1044282_1044972_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1045832_1046783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1047132_1048002_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1048072_1048768_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1048757_1049267_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1049263_1050484_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1050431_1051334_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1052220_1053507_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1053545_1054919_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1054957_1055659_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1055957_1056947_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1057047_1057509_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1057524_1058073_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1058214_1059690_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1059795_1060887_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1060890_1061673_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1061682_1062471_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1063596_1064031_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1064027_1065038_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1065081_1066008_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1066294_1066663_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1066715_1066862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1066879_1067830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1067874_1070301_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1070349_1071042_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1071114_1072314_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1072331_1073237_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1073352_1074282_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1074307_1075654_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1075681_1076431_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1076444_1077227_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1077419_1078370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1078431_1079541_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1080053_1080890_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1080959_1081925_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1081921_1082872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1082889_1083060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1083257_1083800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1084835_1085786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1086027_1086396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1086441_1087566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1088700_1089453_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1089544_1090165_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1090268_1091219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1091215_1093324_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1093468_1094128_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1094159_1094624_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1094899_1095085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1095136_1095889_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1095895_1097158_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1097199_1098438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1099515_1100643_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1100653_1101481_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1101467_1102334_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1103700_1104105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1104467_1105379_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1105393_1106104_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1106100_1107345_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1107346_1107781_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1107809_1108115_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1108213_1109164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1109220_1110375_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1110449_1111400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1111931_1112729_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1112776_1113430_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1113386_1114475_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1114639_1116865_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1119142_1120039_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1119992_1120142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1120159_1121110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	1151495	1222466	4106503	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1151495_1152446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1152502_1153615_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1155998_1156949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1157539_1158316_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1158433_1158697_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1158797_1159802_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1160002_1161604_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1161629_1162388_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1162479_1163136_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1163226_1163991_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1164000_1164189_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1164244_1165288_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1165284_1165698_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1165694_1166315_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1166595_1167546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1167713_1169105_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1169177_1169756_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1169872_1171270_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1171385_1172591_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1172690_1173209_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1173303_1173549_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1173776_1174091_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1174180_1179370_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1179366_1181535_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1181590_1183906_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1183910_1185230_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1185248_1186922_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1186926_1187595_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1187751_1191573_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1191727_1191886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|1191903_1192854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1192875_1194021_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1194169_1195099_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1195095_1196184_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1196180_1196984_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1196980_1197712_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1197769_1199059_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1199155_1199758_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1204311_1204650_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1205357_1205624_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1207330_1208281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1208277_1209609_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1210869_1212870_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1212862_1213504_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1213500_1213908_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1213904_1214705_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1214779_1215484_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1215515_1216310_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1216306_1217257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1217355_1218306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1218404_1218839_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1218921_1221258_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1221449_1222466_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	1269860	1350735	4106503	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1269860_1270811_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1270807_1271758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1272018_1273047_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1273126_1274425_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1274421_1275003_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1275315_1279362_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1279602_1287264_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1287260_1288211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1289350_1289824_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1289963_1290584_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1290719_1291520_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1291574_1292666_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1292687_1293131_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1293159_1293792_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1293902_1294319_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1294311_1295004_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1295110_1295485_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1295561_1296371_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1296466_1297411_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1297449_1298421_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1298511_1298949_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1299007_1299889_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1300892_1301753_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1301785_1303168_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1303164_1304184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1304556_1305051_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1305058_1305799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1305879_1307484_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1307523_1308312_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1309514_1310603_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1311483_1312296_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1312308_1312617_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1312734_1314465_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1314466_1315612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1315741_1316410_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1316531_1316999_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1317134_1318517_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1318513_1319638_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1319634_1322271_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1322686_1323637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1327383_1327995_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1328217_1329678_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1329774_1331367_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1331720_1331978_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1331979_1333320_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1333415_1334105_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1334117_1335548_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1337272_1338094_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1338104_1339676_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1339704_1340682_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1340708_1341512_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1341508_1342303_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1342310_1343546_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1343538_1343973_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1344722_1345673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1346294_1348022_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1348133_1349492_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1349548_1349767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1349784_1350735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	1470126	1522279	4106503	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1470126_1471077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1471094_1471247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1471243_1471597_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1471609_1471972_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1472013_1472439_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1472641_1473898_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1474096_1475077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1475226_1476468_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1476566_1477517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1477525_1478221_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1481042_1481642_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1481652_1483818_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1483841_1485626_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1485625_1485715_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1486409_1486682_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1486681_1488748_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1488744_1489695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1489793_1490744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1490859_1491192_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1491188_1491875_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1491861_1492821_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1492862_1495223_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1495222_1495855_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1495956_1497297_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1497343_1498699_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1498824_1499469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1499413_1499731_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1500003_1500519_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1500612_1500774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1500789_1501545_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1501883_1502090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1502097_1502757_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1503051_1505256_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1505366_1506590_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1506712_1507687_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1507754_1508948_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1508962_1509763_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1509759_1511616_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1511612_1512218_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1512236_1513622_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1514347_1515574_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1515662_1516445_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1516543_1517494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1517520_1518294_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1518305_1519547_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1521328_1522279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	1566204	1634290	4106503	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1566204_1566693_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1566810_1567389_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1567494_1567863_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1567961_1568912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1568918_1570031_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1570717_1571920_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1571955_1572102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1572123_1574784_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1574796_1578201_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1578868_1581094_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1581140_1581467_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1581517_1582126_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1582224_1583175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1583244_1584009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1584005_1584605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1584708_1585560_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1585619_1586246_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1586242_1587193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1587291_1588404_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1588393_1589395_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1589500_1591012_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1591008_1592313_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1592424_1592985_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1593252_1593807_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1594262_1594478_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1594732_1597330_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1597326_1598514_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1599172_1599787_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1599875_1601003_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1601014_1601920_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1602812_1603763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1603944_1604697_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1604765_1605425_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1605421_1606150_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1606162_1608442_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1608466_1608670_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1608711_1609344_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1609479_1610397_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1610393_1611107_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1611344_1612115_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1612119_1612719_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1612963_1614454_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1614512_1614797_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1614934_1615090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1615362_1616289_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1616425_1617166_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1617332_1618709_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1618890_1619796_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1621447_1623250_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1623376_1624018_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1624116_1625067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1625088_1626309_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1626494_1627907_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1627970_1629038_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1629037_1630525_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1630534_1631479_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1631638_1632337_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1632414_1633320_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1633339_1634290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	1670239	1725830	4106503	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1670239_1671190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1671248_1672022_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1672014_1673571_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1673567_1674518_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1675844_1676447_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1676686_1677388_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1677381_1678164_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1678348_1679299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1679397_1680135_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1680324_1681083_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1681129_1682119_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1682296_1683265_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1684804_1685773_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1685781_1686723_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1687196_1688207_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1688197_1689712_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1689708_1691055_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1691057_1692092_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1692141_1693767_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1694319_1695270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1695374_1696322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1696375_1698190_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1698182_1698857_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1698986_1702061_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1702074_1702374_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1702688_1703312_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1703555_1704425_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1704402_1705347_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1705432_1706359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1706471_1707251_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1707241_1708438_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1708468_1709419_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1709640_1710330_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1710394_1711150_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1711201_1712194_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1712203_1713157_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1713272_1714235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1715636_1716065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1716061_1717012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1717305_1718043_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1718466_1719654_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1719657_1720038_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1721757_1722729_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1722742_1723456_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1723460_1724378_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1724484_1724781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1724879_1725830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	1959644	2029296	4106503	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1959644_1962302_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1962379_1963582_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1963578_1964091_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1964213_1964651_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1964927_1965878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1965976_1966927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1967180_1968986_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1969099_1969267_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1969330_1969567_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1969935_1971135_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1972650_1973601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1974052_1975054_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1975226_1976084_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1976080_1977343_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1977443_1977818_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1977890_1979078_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1979162_1979933_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1980046_1980811_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1980761_1982063_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1982059_1982866_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1984610_1985582_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1985738_1986251_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1986409_1987384_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1988384_1989179_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1989204_1990011_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1990121_1990712_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1990722_1991901_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1992003_1992378_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1992630_1993962_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1994028_1997259_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1998749_1999496_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1999580_2000042_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2000079_2001138_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2001100_2002930_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2002969_2003542_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2004966_2005788_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2006106_2007429_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2007788_2008424_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2008383_2009334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2010204_2011077_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2011154_2012294_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2012652_2013909_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2013914_2014442_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2014446_2015265_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2015264_2015987_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2016008_2016323_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2016340_2017489_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2017519_2018395_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2018391_2019711_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2019783_2020980_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2020990_2022478_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2025072_2025972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2026109_2027075_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2027173_2028124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2028345_2029296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	2040792	2090188	4106503	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2040792_2041743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2042880_2043177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2043351_2044704_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2044846_2045863_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2047842_2048856_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2048942_2049848_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2050004_2050349_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2050506_2050965_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2050978_2053195_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2053191_2054253_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2054281_2055256_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2055207_2056026_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2056038_2056647_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2056821_2057217_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2057235_2058675_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2058703_2059051_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2059069_2060020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2060672_2061623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2061706_2063524_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2063597_2064245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2064257_2065187_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2065356_2065821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2066068_2066749_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2066797_2068489_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2068504_2069056_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2069052_2069424_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2069536_2070373_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2070383_2070908_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2071005_2071185_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2071314_2072289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2072419_2072776_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2072765_2073641_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2073739_2074624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2074645_2075941_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2076889_2077540_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2077627_2079148_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2079405_2081271_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2082316_2083267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2083284_2083425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2084239_2084599_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2084586_2086023_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2086019_2086673_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2086669_2087863_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2087966_2089241_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2089237_2090188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	2101392	2142083	4106503	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2101392_2102343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2102441_2103392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2103351_2103765_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2104049_2104349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2104758_2107041_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2107726_2109757_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2109776_2109989_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2110266_2110806_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2110919_2112215_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2112291_2113449_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2113632_2114532_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2114550_2115855_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2115820_2116927_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2117014_2117251_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2117389_2118460_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2118463_2119819_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2119845_2121006_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2121008_2121647_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2121648_2122935_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2122993_2124289_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2124295_2124802_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2124798_2125947_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2125974_2126400_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2126722_2129605_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2129697_2130453_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2131218_2132568_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2132666_2133617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2133715_2134666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2134739_2135213_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2135238_2136447_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2136443_2137217_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2137216_2137840_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2138005_2138266_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2138569_2139151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2139217_2139472_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2139458_2142083_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	2169866	2235415	4106503	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2169866_2170817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2171017_2171827_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2171951_2172902_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2172898_2173792_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2173916_2174111_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2174110_2174452_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2174461_2176324_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2176453_2176966_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2176968_2177292_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2177293_2177704_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2177741_2178953_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2178970_2179483_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2179698_2180190_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2180442_2182479_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2182556_2183759_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2183887_2184538_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2186095_2187046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2187616_2187829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2187846_2188578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2188612_2189254_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2189246_2189915_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2192127_2192904_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2192925_2194083_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2194079_2194511_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2194507_2195311_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2195324_2195726_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2195792_2196764_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2196829_2198053_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2198280_2199231_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2199354_2201808_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2201996_2203301_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2203405_2204059_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2204061_2205372_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2205568_2206129_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2206240_2206441_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2206786_2207353_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2207436_2207640_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2207946_2208267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2208308_2208590_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2208664_2209921_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2210303_2210633_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2212203_2213025_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2213024_2214164_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2214170_2215067_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2215063_2216989_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2217348_2219961_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2220013_2222314_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2222310_2223519_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2223780_2224155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2224151_2225102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2225200_2227195_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2227254_2228220_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2228209_2231071_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2231073_2231580_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2231684_2232893_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2232894_2233833_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2233994_2234468_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2234464_2235415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	2320543	2384121	4106503	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2320543_2321494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2321795_2322272_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2322895_2324533_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2324563_2325877_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2326010_2326328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2326428_2327751_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2327747_2328698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2328796_2329747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2330276_2331299_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2331327_2332158_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2332174_2333872_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2333936_2335013_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2335172_2336036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2336066_2336636_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2336652_2337504_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2338561_2339443_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2339517_2340507_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2340569_2341520_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2341582_2342440_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2342499_2342988_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2344560_2345751_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2345747_2347334_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2347352_2348420_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2348524_2350069_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2350488_2352063_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2352170_2353187_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2353183_2354023_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2354027_2355665_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2355661_2356612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2356629_2356773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2356754_2358029_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2358058_2358349_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2358421_2359435_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2359454_2360717_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2360719_2361643_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2361639_2363133_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2363143_2364076_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2364257_2365583_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2365617_2366961_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2367033_2368554_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2368708_2369440_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2369507_2370848_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2370863_2371775_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2371765_2372359_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2372420_2372807_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2372818_2373289_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2373300_2373924_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2373944_2376692_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2383170_2384121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	2529062	2587306	4106503	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2529062_2530013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2530492_2531149_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2531163_2532831_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2532833_2533463_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2533674_2534769_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2534913_2535726_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2535729_2537433_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2537483_2538614_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2538800_2539877_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2539958_2540609_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2540623_2542027_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2542310_2543129_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2543125_2543830_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2544729_2545845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2545878_2546253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2546275_2547433_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2547445_2547679_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2548313_2551283_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2551297_2551507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2551658_2552288_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2552284_2554375_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2554398_2555079_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2555075_2555636_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2555642_2556740_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2556892_2557486_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2557482_2558775_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2558788_2559331_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2559340_2560177_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2560210_2561272_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2561313_2562366_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2562381_2562684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2562825_2563776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2563793_2563958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2563954_2565649_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2565645_2566731_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2566778_2567678_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2567688_2568333_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2569354_2572597_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2572607_2573762_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2573988_2574951_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2575049_2576000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2576098_2577049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2577058_2577748_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2577807_2578245_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2578290_2579184_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2579231_2580404_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2580400_2581555_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2581751_2582102_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2582091_2582526_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2582542_2583493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2583640_2584108_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2584088_2585246_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2585311_2586238_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2586355_2587306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	2629586	2696086	4106503	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2629586_2630537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2630906_2631479_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2631481_2632492_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2632484_2632985_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2632995_2633337_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2633348_2634140_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2634156_2634426_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2634448_2635237_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010930525.1|2635283_2636300_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2636516_2637959_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2638137_2639757_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2639877_2641698_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2641776_2643309_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2643342_2644989_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2645058_2646081_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2646098_2647232_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2647234_2647924_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2647923_2648709_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2648752_2649517_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2649555_2650977_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2651042_2651747_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2651794_2652214_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2652226_2652634_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2652817_2653528_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2653654_2653945_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2653962_2654445_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2658950_2660105_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2660410_2661427_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2661673_2662462_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2662528_2663209_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2663205_2663976_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2664074_2665025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2665080_2665998_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2666008_2667187_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2667206_2668202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2669790_2670399_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2670386_2671427_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2671444_2672407_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2672403_2673597_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2673593_2674391_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2674416_2675403_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2675421_2677461_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2677662_2678343_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2678356_2679268_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2679264_2679843_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2679981_2680887_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2680894_2684314_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2684301_2686902_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2687857_2688490_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2688883_2689642_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2689638_2690841_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2691028_2691979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2692886_2694032_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2694018_2694774_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2694890_2695070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2695135_2696086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	2894425	2967753	4106503	tRNA,protease,transposase	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2894425_2895781_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2897259_2897982_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2898036_2899020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2899149_2900100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2900096_2900999_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2901086_2901845_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2901857_2902949_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2903046_2904474_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2904703_2905918_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2905963_2908834_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2911244_2911733_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2911858_2914555_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2914709_2916992_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2917168_2917792_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2917890_2918841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2918887_2919442_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2919509_2920355_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2920424_2921393_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2921392_2922256_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2925088_2929015_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2929750_2932981_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2933262_2934090_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2934123_2934819_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2934811_2936092_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2936101_2937079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2937060_2938761_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2938863_2939967_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2939997_2940753_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2940759_2942280_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2942322_2942625_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2942621_2943254_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2943332_2945198_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2945194_2945989_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2946017_2947133_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2948037_2948916_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2948915_2949740_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2949907_2950858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2951070_2953920_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2953901_2954630_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2954770_2956234_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2956230_2956602_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2956619_2957933_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2957969_2958428_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2958382_2958523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2958540_2959491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2959487_2960501_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2960640_2961627_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2961985_2962693_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2963273_2964224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2964375_2964978_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2964996_2965629_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2965673_2965925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2965866_2967753_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	2979478	3029198	4106503	holin,tRNA,transposase	uncultured_Mediterranean_phage(60.0%)	43	NA	NA
WP_005013747.1|2979478_2980429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2980455_2980920_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2982126_2984415_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2984531_2985404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2985446_2986601_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2986635_2987466_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2987549_2989094_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2989136_2989496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2989497_2989911_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2989951_2990269_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2990353_2991070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2991333_2992755_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2995427_2996378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2996357_2996612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2996950_2997967_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2998302_2998944_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2999034_3000471_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3000628_3001702_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3001698_3002835_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3002979_3003324_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3003390_3005271_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3005320_3006256_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3006588_3007605_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3008542_3009970_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3009966_3010989_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3010978_3011452_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3011592_3012480_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3012476_3014120_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3014116_3015166_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3015954_3016971_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3017070_3017703_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3017711_3018101_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3018153_3019206_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3020069_3020834_-	Tar ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_003811919.1|3020907_3021408_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3021422_3023480_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3023506_3023800_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3023901_3024849_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3024861_3025737_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3025857_3026418_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3026452_3026776_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3027211_3027949_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3028247_3029198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	3037408	3099563	4106503	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3037408_3038542_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3038645_3039287_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3039441_3041790_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3041786_3042725_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3042750_3043941_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3043937_3044711_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3044740_3045934_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3046051_3047062_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3047079_3049116_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3049310_3050051_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|3050149_3051100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3051198_3052149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3052191_3053367_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3053588_3055379_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3055391_3057053_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3057065_3059771_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3060063_3061818_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3061814_3062441_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3062437_3063289_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3063364_3065479_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3065665_3066280_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3066425_3066677_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3066746_3068129_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3068125_3071305_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3072112_3073030_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3073081_3073813_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3073872_3074445_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3075953_3076970_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3077107_3078157_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3078261_3079212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3079307_3080033_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3080243_3080624_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3080929_3081802_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3081809_3082190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3082343_3083618_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3085105_3086014_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3086811_3087876_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3089712_3090714_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3090936_3091578_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3091660_3093487_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3093730_3094660_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3094659_3095409_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3095480_3096395_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3096414_3097560_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3097620_3098532_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3098612_3099563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	3118985	3174115	4106503	transposase	Bacillus_phage(28.57%)	48	NA	NA
WP_005012808.1|3118985_3119936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3120065_3120458_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3120734_3121646_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3121770_3122745_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3122741_3123692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3123790_3124876_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3124973_3125384_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3125999_3127913_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3128048_3130661_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3130662_3131397_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3131560_3132742_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3132738_3132951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3132947_3133928_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3133973_3134801_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3134950_3136765_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3136819_3137203_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3137199_3138150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3138262_3138514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3139019_3140138_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3140257_3140470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3140629_3140851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3140903_3141854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3143030_3144401_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3144433_3145225_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3145237_3146293_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3146318_3147194_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3147299_3147548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3147582_3149037_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3149033_3149555_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3149583_3150936_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3151159_3154048_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3156192_3157494_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3157508_3158225_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3158506_3159187_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3159198_3159366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3159474_3159621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3159714_3160374_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3160772_3162605_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3162601_3163552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3164715_3166431_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3166441_3166933_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3167005_3168022_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3168189_3168969_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3168987_3169515_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3169808_3170078_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3170168_3172328_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3172448_3173168_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3173164_3174115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	3255175	3328337	4106503	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3255175_3256126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3256122_3257142_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3257151_3259860_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3260007_3260664_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3260762_3261713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3261860_3262754_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3262953_3264648_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3264682_3265609_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3265677_3266775_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3266793_3267657_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3267668_3268451_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3268447_3269566_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3269562_3271095_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3271135_3272143_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3272287_3273010_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3273025_3274048_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3274364_3275099_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3275183_3276929_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3276925_3277678_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3277722_3278679_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3278767_3279334_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3279341_3280202_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3280231_3280960_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3280991_3281675_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3282512_3283427_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3283491_3284400_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3284490_3285915_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3285916_3287239_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3287235_3289374_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3289451_3294572_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3294672_3294981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3295050_3295608_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3295623_3297105_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3299275_3300613_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3300647_3302645_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3302662_3304711_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3304841_3305708_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3305976_3306942_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3307056_3308205_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3308629_3308941_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3308974_3309235_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3309384_3310518_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3310588_3311725_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3311890_3312685_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3312747_3313191_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3313306_3314257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3314358_3314787_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3314859_3317055_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3317276_3318227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3318186_3318711_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3318842_3319814_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3319933_3322378_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3322393_3322984_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3323227_3324178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3324335_3325601_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3325634_3326732_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3327386_3328337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	3339624	3439737	4106503	tRNA,protease,transposase,tail,terminase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3339624_3340575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3341306_3341684_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3341668_3342370_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3342513_3343206_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3343205_3344309_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3344418_3346791_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3346787_3348347_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3348371_3349169_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3349200_3350346_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3350450_3351893_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3351895_3353125_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3355262_3356213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3357342_3357900_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3357875_3358226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3358394_3359189_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3359185_3360235_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3360234_3360924_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3361010_3361508_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3361539_3362856_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3362872_3363847_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3363883_3364342_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3364341_3365022_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3365024_3365453_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3365505_3367236_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3367301_3367874_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3367854_3368541_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3368896_3369568_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3369896_3370118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3370117_3370399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3370395_3370911_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3370910_3371462_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3371440_3371683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3371687_3372500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3372499_3372763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3372803_3373001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3372981_3373398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3373402_3377359_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3377351_3377741_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3377737_3378271_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3378338_3378698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3378707_3381320_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3381345_3381636_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3381653_3381983_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3381992_3382511_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3382765_3383266_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3383273_3383696_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3383692_3384091_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3384087_3384483_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3384482_3384683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3384684_3385167_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3385229_3385481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3386155_3387106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3387534_3388137_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3388259_3388502_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3388507_3389563_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3389591_3391010_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3391012_3392290_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3392276_3392762_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3393401_3394352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3394369_3394591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3394608_3395298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3395290_3395542_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3396096_3396708_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3396779_3396986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3397237_3398188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3398286_3399360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3399527_3400322_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3400361_3400886_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3400878_3402621_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3402830_3403589_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3403591_3404299_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3404315_3405197_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3405207_3405966_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3405934_3406690_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3406759_3408178_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3408199_3408850_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3408983_3409319_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3409407_3410358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3410434_3412255_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3412259_3413333_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3413455_3414424_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3414497_3415409_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3415427_3416000_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3416080_3416629_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3416628_3418218_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3418287_3418527_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3418567_3419593_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3419658_3420840_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3420936_3421389_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3421398_3422739_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3423055_3424093_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3424474_3424834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3424917_3425859_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3425933_3426884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3427177_3428272_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3428353_3429235_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3429256_3430096_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3430171_3431689_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3431785_3432886_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3432902_3433325_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3433347_3433560_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3433606_3434527_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3434709_3435459_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3435461_3435791_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3435997_3437431_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3437442_3437826_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3437887_3438688_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3438786_3439737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	3600406	3655380	4106503	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3600406_3601357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3601473_3602541_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602616_3605745_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3606252_3607218_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3607220_3607892_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3608048_3609008_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3609015_3609678_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609674_3610625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3610746_3612000_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3611977_3612940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3613071_3613566_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3613565_3614798_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3615543_3615825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3615811_3616798_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3616941_3617346_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3617487_3620874_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3620904_3622368_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3622388_3624005_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3624090_3624750_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3624779_3625220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3625730_3625934_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3626109_3627015_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3627113_3628064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3628162_3629113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3630894_3632088_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3632153_3633182_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3633208_3634381_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3634506_3635484_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3635494_3636466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3636532_3637318_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3637310_3638543_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3638738_3639494_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3639604_3640123_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3641911_3643312_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3643411_3643756_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3643844_3644315_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3644725_3645124_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3645255_3646206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3648650_3649385_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3649794_3649974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3650164_3651478_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3651493_3653005_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3653001_3654207_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3654402_3655380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	3745193	3799388	4106503	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
WP_005013747.1|3745193_3746144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3746266_3746995_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3747091_3748270_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3748266_3749100_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3749136_3749877_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3749996_3751172_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3751168_3752122_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3752135_3752537_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3752529_3753135_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3753222_3753387_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3753503_3754352_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3754348_3755002_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3755018_3756302_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3756541_3758167_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3758260_3758662_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3758686_3759121_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3759122_3760772_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3760812_3761982_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3761984_3762848_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3766211_3766916_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3766909_3767704_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3767700_3768666_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3768669_3769590_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3769686_3770850_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3771072_3771963_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3771966_3772470_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3772512_3773511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3773507_3774458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3774546_3774834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3775025_3775976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3776035_3776596_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3778098_3778980_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3779093_3780296_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3780424_3782284_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3782361_3783171_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3783241_3784243_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3784274_3785135_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3785334_3786339_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3786335_3787922_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3787930_3788857_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3788879_3789506_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3789604_3790555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3790551_3791688_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3791741_3792518_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3792542_3793001_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3793140_3793782_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3793846_3795229_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3795248_3796103_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3796261_3796873_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3796882_3797332_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3797850_3797991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3797998_3798160_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_193394812.1|3798273_3798420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3798437_3799388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	3810004	3870893	4106503	tRNA,protease,transposase	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_010929591.1|3810004_3810955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3811685_3812666_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3812679_3813804_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3813811_3815566_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3815672_3816572_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3816636_3817620_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3817755_3818736_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3818752_3820144_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3820295_3820832_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3820762_3822148_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3822290_3822929_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3823015_3824905_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3824901_3825843_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3825948_3826998_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3827250_3827952_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3827948_3828647_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3828647_3830003_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3829999_3830491_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3830509_3831466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3832876_3834979_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3835149_3836193_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3836236_3836980_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3838001_3838412_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3839361_3840159_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3840257_3841208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3841204_3842155_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3842241_3843192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3843306_3844308_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3844398_3844965_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3845283_3847197_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3847238_3848669_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3848781_3850194_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3850210_3850906_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3851124_3852075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3852099_3852999_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3853153_3853702_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3853740_3854460_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3854531_3857474_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3858067_3860863_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3861320_3862253_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3862364_3863714_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3863745_3864471_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3864521_3865373_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3865502_3866189_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3866188_3866833_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3866889_3867165_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3867190_3867487_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3867532_3868312_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3868317_3869358_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3869462_3869786_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3869942_3870893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011755	Bordetella pertussis strain J023 chromosome, complete genome	4106503	4028674	4082106	4106503	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028674_4029625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029794_4031021_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031220_4032087_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032079_4033042_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033142_4034093_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034191_4035142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035240_4036191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036187_4037681_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037677_4040785_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040781_4043850_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043846_4045097_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045277_4046039_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046071_4046722_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046724_4047564_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047804_4048548_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048630_4048978_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049075_4049918_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049962_4050850_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050876_4051065_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051162_4052620_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052606_4054133_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054151_4054619_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054618_4055641_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055761_4056481_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056556_4057657_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057658_4058849_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058968_4059985_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060303_4060975_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060971_4061880_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062091_4062739_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066590_4067667_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067677_4068487_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068576_4069350_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069350_4069515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069532_4070483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070371_4071394_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071383_4072538_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072577_4073990_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074114_4074981_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074982_4075807_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075803_4076565_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076645_4077332_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077505_4078513_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078509_4079289_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079346_4080609_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081155_4082106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
