The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	27282	70036	4107558	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	232666	307010	4107558	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268689.1|250561_250738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853374.1|250698_250839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	489373	607268	4107558	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490422_491373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494549_495362_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495398_495725_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495729_496290_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498552_499929_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502319_502709_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503170_504121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505166_506039_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509254_509710_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512643_513252_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514343_515558_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517509_518460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519893_521180_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|521675_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524263_525124_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526322_527207_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529120_530119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530230_531376_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536397_537264_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539089_539587_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539883_540834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542223_543174_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545497_546646_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|546690_547314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548455_549193_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|549272_550094_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553383_554418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558081_558987_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559030_560164_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560292_561243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561341_563411_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568081_568504_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568513_569914_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569956_570862_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570960_572502_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572536_573076_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573088_573559_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574055_574937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575009_575330_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|576181_577132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579266_581039_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583519_584470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584482_585418_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586313_587483_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587479_588769_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|589300_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592580_593144_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594190_594979_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|595154_596144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597900_598851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602998_603517_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603546_604179_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|604906_606046_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	611682	675515	4107558	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611682_612699_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612970_613597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|613652_614780_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614785_620503_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626613_627531_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629891_630113_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630443_631460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631544_631796_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633717_635481_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638006_639431_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639430_640132_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641636_642587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642682_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643658_644339_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644476_644869_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644976_645993_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646232_647018_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647112_648522_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649353_650124_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650630_651581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658666_659617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659613_660702_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660737_661601_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|662740_663130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|663133_663916_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663949_664735_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665010_666150_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666146_666938_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669550_670714_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|670739_671423_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671376_672711_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674564_675515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	694426	771735	4107558	tRNA,transposase,protease,integrase	Bacillus_phage(20.0%)	59	741563:741581	761451:761469
WP_023995489.1|694426_695377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695475_696951_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703758_705084_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706687_707185_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|708239_708671_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708800_709469_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710197_711301_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|711406_712681_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713719_715090_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719313_720468_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720464_721595_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726971_727682_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727678_729001_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729080_731042_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735209_736889_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738034_738862_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740743_741343_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741391_742291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742499_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743572_744187_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744315_744912_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|750160_752917_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752918_755870_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755885_757097_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|757093_757294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|757280_758231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758247_758742_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759546_760458_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761607_762558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762976_765541_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765585_767439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|767771_769343_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|770611_770767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|770784_771735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	842536	907476	4107558	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|842536_843487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|843483_845316_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|845714_846374_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|846901_847582_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|847863_848580_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|848594_849896_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|852040_854929_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|855152_856505_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|856533_857055_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|857051_858506_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|858540_858789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|858894_859770_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|859795_860851_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|860863_861655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|861687_863058_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|864234_865185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|865237_865459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|865618_865831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|865950_867069_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|867165_867381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|867574_867826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|867938_868889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|868885_869269_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|869323_871138_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|871287_872115_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|872160_873141_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|873137_873350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|873346_874528_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|874691_875426_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|875427_878040_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|878175_880089_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|880704_881115_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|881212_882298_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|882396_883347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|883343_884318_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|884442_885354_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|885630_886023_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|886152_887103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|887132_887315_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|888087_889269_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|889484_890162_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|890158_890884_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|891009_891591_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|891961_894643_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|894645_895776_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|895768_896854_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|896940_897840_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|897836_899165_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|899179_899851_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|900038_901754_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|901755_902115_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|902306_902621_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|902663_903884_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|903880_904822_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|904818_905808_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|905842_906427_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|906525_907476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	926876	990134	4107558	transposase	Enterococcus_phage(20.0%)	54	NA	NA
WP_005012067.1|926876_927827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|927931_928981_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|929118_930135_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|931643_932216_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|932275_933007_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|933058_933976_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|934783_937963_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|937959_939342_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|939411_939663_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|939808_940423_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|940609_942670_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|942799_943651_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|943647_944274_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|944270_946025_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|946317_949023_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|949035_950697_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|950709_952500_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|952721_953897_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|953939_954890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|954988_955939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|956037_956778_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|956972_959009_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|959026_960037_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|960154_961348_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|961377_962151_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|962147_963338_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|963363_964302_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|964298_966647_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|966801_967443_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|968772_968925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|968956_969505_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|969523_970009_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|970186_971125_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|971127_971445_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|971490_972435_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|974115_974766_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|974819_975155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|975151_976012_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|976028_976310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|976383_976647_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|976890_977841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|978139_978877_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|979312_979636_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|979670_980231_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|980351_981227_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|981239_982187_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|982288_982582_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|982608_984666_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|984680_985181_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_023995045.1|985254_986019_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_010930146.1|986882_987935_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|987987_988377_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|988385_989018_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|989117_990134_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	996118	1056181	4107558	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_015041211.1|996118_997546_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|998483_999500_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|999832_1000768_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1000817_1002698_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1002764_1003109_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1003253_1004390_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1004386_1005460_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1005617_1007054_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1007144_1007786_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1008121_1009138_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|1009476_1009731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|1009710_1010661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1013333_1014755_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1015018_1015735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1015819_1016137_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1016177_1016591_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1016592_1016952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1016994_1018539_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1018622_1019453_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1019487_1020642_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1020684_1021557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1021673_1023962_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1025168_1025633_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1025659_1026610_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1026627_1026765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1026977_1027754_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1027798_1028656_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1028677_1029694_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1029828_1030869_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1031063_1033145_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1033380_1034874_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1035104_1035899_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1036119_1037478_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1037474_1038317_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1038335_1040222_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1040163_1040415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1040459_1041092_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1041110_1041713_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1041864_1042815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1043395_1044103_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1044461_1045448_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1045587_1046601_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1046597_1047548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1047565_1047706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1047660_1048119_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1048155_1049469_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1049486_1049858_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1049854_1051318_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1051458_1052187_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1052168_1055018_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1055230_1056181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	1246579	1315066	4107558	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1246579_1247530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1248298_1248937_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1249826_1250273_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1250354_1251056_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1251056_1251824_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1251820_1253059_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1253058_1253985_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1254087_1255203_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1255218_1256169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1256522_1257104_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1257100_1257934_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1258144_1259458_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1259634_1260516_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1260535_1261387_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1261439_1262528_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1262638_1263766_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1264000_1264612_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1264710_1265661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1265882_1266260_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1266407_1266905_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1266901_1267429_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1267562_1268378_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1268390_1269572_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1269619_1270513_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1270639_1271110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1271235_1272063_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1272091_1272868_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1272864_1273140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1273154_1273619_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1273630_1274332_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1274441_1274942_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1275024_1276203_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1277830_1278166_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1278353_1279802_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1279859_1280204_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1280310_1280850_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1280942_1281893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1281910_1282150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1282631_1283063_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1283244_1283649_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1284885_1285209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1285211_1286099_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1286131_1286557_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1286628_1286982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1287221_1287728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1287766_1289098_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1289157_1289973_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1289969_1290824_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1293886_1296430_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1297796_1299551_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1299547_1301668_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1301672_1303868_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1303864_1307206_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1310008_1310959_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1311024_1311204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1311320_1312076_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1312062_1313208_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1314115_1315066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	1375557	1431044	4107558	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1375557_1376508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1377709_1378156_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1378148_1379624_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1379620_1380376_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1380368_1381379_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1381368_1383045_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1383357_1383690_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1383703_1384099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1384108_1384435_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1384431_1384758_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1384684_1385098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1385702_1386053_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1386100_1386529_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1386536_1387910_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1388050_1388428_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1388690_1389998_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1390058_1390889_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1390885_1391374_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1391415_1392936_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1392979_1393456_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1394259_1396857_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1396886_1397708_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1398434_1399184_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1399367_1400246_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1400343_1401060_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1401074_1401635_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1401801_1402566_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1402585_1403443_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1403439_1404639_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1404678_1406013_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1406065_1408402_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1408527_1409091_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1409099_1410191_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1410262_1410718_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1410718_1411513_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1411509_1412691_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1412677_1413283_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1413279_1414053_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1414064_1414892_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1415053_1417417_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1417484_1418204_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1418327_1418753_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1418787_1419738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1419855_1420782_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1420847_1422005_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1421985_1422453_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1422600_1423551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1423567_1424002_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1423991_1424342_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1424538_1425693_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1425689_1426862_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1426909_1427803_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1427848_1428286_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1428345_1429035_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1429044_1429995_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1430093_1431044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	1626780	1683991	4107558	transposase	Klosneuvirus(16.67%)	50	NA	NA
WP_010931070.1|1626780_1627731_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1631477_1632089_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1632311_1633772_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1633868_1635461_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1635814_1636072_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1636073_1637414_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1637509_1638199_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1638211_1639642_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1641366_1642188_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1642198_1643770_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1643798_1644776_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1644802_1645606_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1645602_1646397_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1646404_1647640_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1647653_1648067_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247980.1|1648377_1648695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1648816_1649767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1650388_1652116_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1652227_1653586_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1653642_1653861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1653878_1654829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1654869_1655940_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1655962_1656841_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1657012_1657984_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1658146_1658989_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1659150_1659831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1659824_1660994_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1660990_1662022_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1662089_1663307_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1663341_1664874_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1664954_1665578_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1665608_1666220_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1666255_1666726_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1667157_1668162_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1668198_1669713_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1669716_1670676_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1670704_1671508_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1671509_1673144_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1673227_1674289_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1674487_1674757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1674760_1675285_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1675700_1676651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1676647_1677682_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1677790_1678429_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1678723_1678951_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1679073_1679787_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1680031_1680982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1681121_1681367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1681481_1682930_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1683040_1683991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	1774220	1826373	4107558	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1774220_1775171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1775188_1775341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1775337_1775691_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1775703_1776066_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1776107_1776533_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1776735_1777992_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1778190_1779171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1779320_1780562_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1780660_1781611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1781619_1782315_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1785136_1785736_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1785746_1787912_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1787935_1789720_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1789719_1789809_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1790503_1790776_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1790775_1792842_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1792838_1793789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1793887_1794838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1794953_1795286_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1795282_1795969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1795955_1796915_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1796947_1799317_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1799316_1799949_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1800050_1801391_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1801437_1802793_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1803083_1803320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1803507_1803825_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1804097_1804613_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1804883_1805639_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1805977_1806184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1806191_1806851_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1807145_1809350_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1809460_1810684_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1810806_1811781_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1811848_1813042_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1813056_1813857_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1813853_1815710_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1815706_1816312_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1816330_1817716_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1818441_1819668_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1819756_1820539_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1820637_1821588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1821614_1822388_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1822399_1823641_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1825422_1826373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	1870298	1938384	4107558	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1870298_1870787_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1870904_1871483_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1871588_1871957_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1872055_1873006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1873012_1874125_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1874811_1876014_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1876217_1878878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1878890_1882295_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1882962_1885188_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1885234_1885561_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1885611_1886220_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1886318_1887269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1887338_1888103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1888099_1888636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1888802_1889654_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1889713_1890340_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1890336_1891287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1891385_1892498_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1892487_1893489_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1893594_1895106_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1895102_1896407_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1896518_1897079_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1897346_1897901_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1898356_1898572_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1898826_1901424_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1901420_1902608_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1903266_1903881_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1903969_1905091_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1905108_1906014_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1906906_1907857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1908038_1908791_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1908859_1909519_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1909515_1910244_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1910256_1912536_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1912560_1912764_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1912805_1913438_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1913573_1914491_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1914487_1915201_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1915438_1916209_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1916213_1916813_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1917057_1918548_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1918606_1918891_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1919456_1920383_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1920519_1921260_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1921426_1922803_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1922984_1923890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1925541_1927344_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1927461_1928112_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1928210_1929161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1929182_1930403_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1930588_1932001_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1932064_1933132_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1933131_1934619_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1934628_1935573_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1935732_1936431_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1936508_1937414_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1937433_1938384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	1974333	2029924	4107558	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1974333_1975284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1975342_1976116_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1976108_1977665_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1977661_1978612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1979938_1980541_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1980780_1981482_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1981475_1982258_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1982442_1983393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1983491_1984229_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1984418_1985177_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1985223_1986213_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1986390_1987359_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1988898_1989867_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1989875_1990817_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1991290_1992301_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1992291_1993806_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1993802_1995149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1995151_1996186_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1996235_1997861_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1998413_1999364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1999468_2000416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|2000469_2002284_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|2002276_2002951_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|2003080_2006155_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|2006168_2006468_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|2006782_2007406_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|2007649_2008519_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|2008496_2009441_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|2009526_2010453_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|2010565_2011345_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|2011335_2012532_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|2012562_2013513_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|2013734_2014424_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|2014488_2015244_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|2015295_2016288_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2016297_2017251_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|2017366_2018329_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|2019730_2020159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2020155_2021106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|2021399_2022122_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|2022560_2023748_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|2023751_2024102_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|2025851_2026823_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|2026836_2027550_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|2027554_2028472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|2028578_2028875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2028973_2029924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	2200472	2272070	4107558	tRNA,transposase	Faecalibacterium_phage(33.33%)	60	NA	NA
WP_010931070.1|2200472_2201423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930677.1|2203303_2205016_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_010930678.1|2205472_2206291_+	membrane protein	NA	NA	NA	NA	NA
WP_003820212.1|2206388_2206565_+	Flp family type IVb pilin	NA	NA	NA	NA	NA
WP_003820213.1|2206634_2207159_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_010930679.1|2207119_2207563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930680.1|2207564_2208041_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_010930681.1|2208037_2208979_+	Flp pilus assembly protein CpaB	NA	NA	NA	NA	NA
WP_010930682.1|2209034_2210384_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_010930683.1|2210380_2211730_+	pilus assembly protein CpaE	NA	NA	NA	NA	NA
WP_010930684.1|2213088_2214009_+	membrane protein	NA	NA	NA	NA	NA
WP_014486078.1|2214017_2215004_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_010930685.1|2215003_2215846_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930686.1|2216269_2218513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820229.1|2218534_2219926_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810189.1|2220005_2220701_+	DUF2968 domain-containing protein	NA	NA	NA	NA	NA
WP_010930687.1|2220800_2221268_+	DUF1178 family protein	NA	NA	NA	NA	NA
WP_010930688.1|2221325_2222030_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930689.1|2222176_2222746_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930690.1|2222742_2223153_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_003810194.1|2223272_2223830_-	elongation factor P	NA	NA	NA	NA	NA
WP_010930691.1|2223972_2225085_-	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA	NA
WP_010930692.1|2225100_2226303_-	DUF2863 family protein	NA	NA	NA	NA	NA
WP_023853586.1|2226409_2227249_+	dioxygenase	NA	NA	NA	NA	NA
WP_003820240.1|2227357_2230063_-	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_010930694.1|2230300_2230903_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930695.1|2231179_2233384_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930696.1|2233546_2234281_+	haloacid dehalogenase type II	NA	NA	NA	NA	NA
WP_005012067.1|2234357_2235308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2235406_2236357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|2236438_2236987_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|2236989_2237328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|2237723_2240315_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_029443737.1|2240381_2241125_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_003810206.1|2241137_2241524_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|2241530_2241821_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|2241956_2242256_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|2242324_2243227_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|2243230_2244001_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|2244386_2244836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2244903_2245854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853556.1|2245840_2246071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926318.1|2246215_2247127_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|2247352_2248870_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|2250101_2251064_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|2251152_2251401_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|2257958_2258402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|2258466_2258739_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|2258735_2259683_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|2259864_2261259_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|2261281_2261677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|2261673_2262933_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|2263054_2264110_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|2264112_2264772_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|2264787_2267445_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2267522_2268725_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2268721_2269234_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2269356_2269794_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2270070_2271021_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|2271119_2272070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	2277793	2347935	4107558	transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010929591.1|2277793_2278744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2279195_2280197_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2280369_2281227_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2281223_2282486_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2282586_2282961_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2283033_2284221_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2284305_2285076_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2285189_2285954_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2285904_2287206_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2287202_2288009_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2289753_2290725_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2290881_2291394_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2291552_2292527_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2293527_2294322_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2294347_2295154_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2295264_2295855_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2295865_2297044_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2297146_2297521_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2297773_2299105_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2299171_2302402_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2303892_2304639_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2304723_2305185_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2305222_2306281_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2306243_2308073_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2308112_2308685_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2310109_2310931_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2311249_2312572_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2312931_2313567_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2313526_2314477_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2315347_2316220_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2316297_2317437_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2317795_2319052_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2319057_2319585_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2319589_2320408_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2320407_2321130_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2321151_2321466_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2321483_2322632_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2322662_2323538_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2323534_2324854_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2324926_2326123_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2326133_2327621_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2330215_2331115_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2331252_2332218_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2332316_2333267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2333488_2334439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2334537_2335488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2335484_2335787_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2335946_2336351_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2336343_2337570_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2337566_2338013_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2338082_2338865_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2338906_2340412_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2340697_2341531_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2342968_2343790_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2343808_2344663_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2344666_2345638_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2346322_2346499_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2346984_2347935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	2351038	2409584	4107558	transposase	uncultured_Mediterranean_phage(16.67%)	58	NA	NA
WP_010930153.1|2351038_2352055_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2354034_2355048_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2355134_2356040_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2356196_2356541_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2356698_2357157_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2357170_2359387_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2359383_2360445_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2360473_2361448_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2361399_2362218_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2362230_2362839_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2363013_2363409_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2363427_2364867_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2364895_2365243_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2365261_2366212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2366864_2367815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2367898_2369716_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2369789_2370437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2370449_2371379_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2371548_2372013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2372260_2372941_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2372989_2374681_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2374696_2375248_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2375244_2375616_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2375728_2376565_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2376575_2377100_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2377197_2377377_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2377506_2378481_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2378611_2378968_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2378957_2379833_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2379931_2380816_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2380837_2382133_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2383081_2383732_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2383819_2385340_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2385597_2387463_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2388508_2389459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2389476_2389617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2390431_2390791_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2390778_2392215_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2392211_2392865_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2392861_2394055_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2394158_2395433_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2395429_2396380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162300163.1|2396397_2396652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2396546_2397521_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2397517_2397661_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2399282_2399945_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2399947_2400124_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2400120_2401059_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2401150_2402641_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2402726_2402879_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2402892_2403132_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2403227_2403971_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2403979_2404504_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2404602_2405526_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2405522_2406284_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2406299_2407385_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2407584_2408535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2408633_2409584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	2419824	2479094	4107558	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_010930787.1|2419824_2420724_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2420742_2422047_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2422012_2423119_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2423206_2423443_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2423581_2424652_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2424655_2426011_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2426037_2427195_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2427200_2427839_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2427840_2429136_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2429185_2430472_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2430487_2430994_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2430990_2432139_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2432166_2432592_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2432914_2435797_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2435889_2436645_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2437410_2438760_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2438858_2439809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2439907_2440858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2440931_2441405_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2441430_2442639_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2442635_2443409_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2443408_2444032_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2444197_2444458_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2444761_2445343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2445409_2445664_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2445650_2448275_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2448346_2449165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2449161_2449767_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2449804_2450938_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2452653_2453028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2453125_2454400_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2454403_2455981_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2456887_2458243_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2458239_2459874_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2459866_2460697_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2460714_2461659_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2461711_2463286_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2463333_2463693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2463685_2464006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2464121_2465054_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2465156_2466113_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2466262_2467600_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2467604_2468861_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2469056_2470103_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2470160_2470529_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2470659_2471532_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2471608_2472511_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2473567_2474785_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2476058_2477009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2477209_2478019_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2478143_2479094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	2492287	2557108	4107558	tRNA,transposase,protease	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2492287_2493238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2493808_2494021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2494038_2494770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2494804_2495446_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2495438_2496107_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2498319_2499096_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2499117_2500275_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2500271_2500703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2500699_2501497_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2501516_2501918_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2501984_2502956_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2503021_2504245_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2504472_2505423_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2505546_2508000_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2508188_2509493_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2509597_2510251_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2510253_2511564_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2511742_2512321_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2512432_2512633_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2512978_2513545_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2513628_2513832_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2514138_2514459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2514500_2514782_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2514856_2516113_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2516495_2516825_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2518395_2519217_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2519216_2520356_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2520362_2521259_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2521273_2523181_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2523540_2526153_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2526205_2528506_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2528502_2529711_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2529972_2530347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2530343_2531294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2531392_2533387_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2533446_2534412_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2534401_2537263_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2537265_2537772_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2537876_2539085_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2539086_2540025_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2540186_2540660_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2540656_2541607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2541717_2542158_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2542286_2543516_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2543554_2544376_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2544429_2545581_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2545672_2546161_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2548711_2551261_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2551331_2553905_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2554170_2554371_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2554402_2554564_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2554621_2554960_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2555108_2556059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2556157_2557108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	2736433	2856696	4107558	transposase,protease	Agrobacterium_phage(16.67%)	97	NA	NA
WP_010931070.1|2736433_2737384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2737380_2738331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2738647_2739253_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2739306_2740620_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2740694_2741165_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2741164_2741953_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2741963_2743616_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2743703_2744654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2745815_2746322_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2746318_2747083_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2747098_2747383_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2747447_2748437_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2748608_2749538_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2749509_2750196_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2750229_2750775_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2750819_2752085_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2752081_2752984_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2754165_2755110_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2755204_2756722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2756763_2758392_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2758499_2759381_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2762493_2762868_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2762892_2763231_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2763274_2764909_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2764947_2766294_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2766401_2767823_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2767892_2768477_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2768579_2769530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2769664_2770771_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2770781_2771879_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2772023_2773229_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2773235_2773757_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2773753_2774236_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2774241_2774493_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2774473_2774959_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2775094_2778556_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2778573_2779458_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2779467_2779899_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2780145_2780649_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2780726_2782127_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2782201_2783077_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2783073_2784081_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2784548_2784854_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2784944_2785535_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2785725_2786742_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2786933_2789270_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2789352_2789787_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2789885_2790836_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2790934_2791885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2791881_2792676_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2792707_2793412_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2793486_2794287_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2794283_2794691_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2794687_2795329_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2795321_2797322_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2798582_2799914_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2799910_2800861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2802567_2802834_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2803541_2803880_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2808433_2809036_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2809132_2810422_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2810479_2811211_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2811207_2812011_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2812007_2813096_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2813092_2814022_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2814170_2815316_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2815337_2816288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2816305_2816464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2816618_2820440_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2820596_2821265_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2821269_2822943_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2822961_2824281_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2824285_2826601_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2826656_2828825_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2828821_2834002_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2834100_2834415_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2834642_2834888_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2834982_2835501_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2835600_2836806_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2836921_2838319_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2838435_2839014_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2839086_2840478_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2840645_2841596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2841876_2842497_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2842493_2842907_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2842903_2843947_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2844002_2844191_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2844200_2844965_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2845055_2845712_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2845803_2846562_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2846587_2848189_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2848389_2849394_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2849494_2849758_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2849875_2850652_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2851242_2852193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2854576_2855689_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2855745_2856696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	2887082	2930773	4107558	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2887082_2888033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2888050_2888200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2888153_2889050_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2891327_2893553_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2893717_2894806_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2894762_2895416_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2895463_2896261_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2896792_2897743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2897823_2898972_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2899028_2899979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2900077_2900383_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2900411_2900846_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2900847_2902092_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2902088_2902799_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2902813_2903725_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2904087_2904492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2904488_2904947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2904953_2905862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2905858_2906725_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2906711_2907539_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2907549_2908677_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2909754_2910993_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2911034_2912297_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2912303_2913056_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2913107_2913293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2913568_2914033_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2914064_2914724_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2914868_2916977_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2916973_2917924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2918027_2918648_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2918751_2919492_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2920626_2921751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2921796_2922165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2922406_2923357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2924392_2924935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2925132_2925303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2925320_2926271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2926267_2927176_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2927302_2928139_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2928651_2929761_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2929822_2930773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	3164285	3215747	4107558	transposase	Acidithiobacillus_phage(50.0%)	41	NA	NA
WP_005012808.1|3164285_3165236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3165680_3165992_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3165991_3166522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3166478_3166667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3166684_3167635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3167733_3168684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3168973_3169438_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3169452_3170958_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3171211_3172819_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3172874_3173780_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3174220_3175171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3175311_3176529_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3176522_3177134_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3177767_3178745_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3178888_3179635_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3179656_3180103_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3180890_3183122_+	BCCT family transporter	NA	NA	NA	NA	NA
WP_003813993.1|3183144_3183945_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3184226_3185459_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3185569_3186559_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3186589_3187978_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3189576_3190560_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3190756_3191773_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3191969_3192794_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3192871_3193795_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3193965_3195117_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3195120_3196152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930023.1|3196280_3197252_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3197276_3199361_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3199427_3200420_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3200528_3201863_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3201888_3203901_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3203897_3205946_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3206049_3206697_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3206837_3207332_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3207375_3208047_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3208061_3209555_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3209551_3212665_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3212677_3213784_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3213907_3214576_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3214796_3215747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	3256231	3325234	4107558	transposase	Klosneuvirus(16.67%)	54	NA	NA
WP_041337087.1|3256231_3257182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3257178_3258198_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3258207_3260916_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3261063_3261720_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3261818_3262769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3262916_3263810_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3264009_3265704_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3265738_3266665_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3266733_3267831_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3267849_3268713_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3268724_3269507_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_077107798.1|3269503_3270622_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3270618_3272151_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3272191_3273199_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3273343_3274066_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3274081_3275104_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3275420_3276155_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3276239_3277985_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3277981_3278734_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3278778_3279735_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3279823_3280390_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3280397_3281258_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3281287_3282016_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3282047_3282731_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3283568_3284483_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3284547_3285456_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3285546_3286971_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3286972_3288295_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3288291_3290430_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3290507_3295628_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_010929994.1|3296106_3296664_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3296679_3298161_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3298215_3300069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3300331_3301669_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3301703_3303701_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3303718_3305767_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3305897_3306764_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3307032_3307998_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3308112_3309261_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3309685_3309997_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3310030_3310291_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3310440_3311574_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3311644_3312781_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3312946_3313741_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3313803_3314247_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3314362_3315313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3315435_3315843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3315915_3318111_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3318332_3319283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3319242_3319767_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3319898_3320870_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3320989_3323434_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3323449_3324040_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3324283_3325234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	3340680	3440793	4107558	tRNA,terminase,tail,transposase,protease	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3340680_3341631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3342362_3342740_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3342724_3343426_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3343569_3344262_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3344261_3345365_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3345474_3347847_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3347843_3349403_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3349427_3350225_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3350256_3351402_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3351506_3352949_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3352951_3354181_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3356318_3357269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3358398_3358956_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3358931_3359282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3359450_3360245_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3360241_3361291_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3361290_3361980_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3362066_3362564_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3362595_3363912_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3363928_3364903_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3364939_3365398_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3365397_3366078_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3366080_3366509_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3366561_3368292_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3368357_3368930_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3368910_3369597_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3369952_3370624_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3370952_3371174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3371173_3371455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3371451_3371967_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3371966_3372518_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3372496_3372739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3372743_3373556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3373555_3373819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3373859_3374057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3374037_3374454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3374458_3378415_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3378407_3378797_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3378793_3379327_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3379394_3379754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3379763_3382376_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3382401_3382692_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3382709_3383039_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3383048_3383567_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3383821_3384322_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3384329_3384752_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3384748_3385147_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3385143_3385539_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3385538_3385727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3385740_3386223_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3386285_3386537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3387211_3388162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3388590_3389193_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3389315_3389558_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3389563_3390619_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3390647_3392066_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3392068_3393346_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3393332_3393818_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3394457_3395408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3395425_3395647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3395664_3396354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3396346_3396598_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3397152_3397764_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3397835_3398042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3398293_3399244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3399342_3400416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3400583_3401378_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3401417_3401942_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3401934_3403677_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3403886_3404645_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3404647_3405355_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3405371_3406253_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3406263_3407022_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3406990_3407746_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3407815_3409234_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3409255_3409906_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3410039_3410375_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3410463_3411414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3411490_3413311_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3413315_3414389_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3414511_3415480_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3415553_3416465_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3416483_3417056_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3417136_3417685_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3417684_3419274_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3419343_3419583_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3419623_3420649_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3420714_3421896_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3421992_3422445_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3422454_3423795_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3424111_3425149_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3425530_3425890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3425973_3426915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3426989_3427940_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3428233_3429328_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3429418_3430291_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3430312_3431152_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3431227_3432745_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3432841_3433942_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3433958_3434381_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3434403_3434616_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3434662_3435583_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3435765_3436515_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3436517_3436847_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3437134_3438487_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3438498_3438882_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3438943_3439744_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3439842_3440793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	3601462	3656436	4107558	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3601462_3602413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3602529_3603597_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3603672_3606801_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3607308_3608274_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3608276_3608948_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3609104_3610064_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3610071_3610734_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3610730_3611681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3611802_3613056_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3613033_3613996_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3614127_3614622_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3614621_3615854_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3616599_3616881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3616867_3617854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3617997_3618402_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3618543_3621930_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3621960_3623424_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3623432_3625061_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3625146_3625806_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3625835_3626276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3626786_3626990_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3627165_3628071_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3628169_3629120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3629218_3630169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3631950_3633144_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3633209_3634238_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3634264_3635437_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3635562_3636540_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3636550_3637522_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3637588_3638374_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3638366_3639599_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3639794_3640550_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3640660_3641179_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3642967_3644368_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3644467_3644812_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3644900_3645371_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3645781_3646180_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3646311_3647262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3649706_3650441_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3650850_3651030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3651220_3652534_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3652549_3654061_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3654057_3655263_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3655458_3656436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	3746249	3861919	4107558	tRNA,transposase,protease	Bacillus_phage(12.5%)	100	NA	NA
WP_005013747.1|3746249_3747200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3747322_3748051_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3748147_3749326_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3749322_3750156_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3750192_3750933_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3751052_3752228_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3752224_3753178_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3753191_3753593_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3753585_3754191_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3754278_3754443_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3754559_3755408_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3755404_3756058_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3756074_3757358_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3757597_3759223_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3759316_3759718_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3759742_3760177_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3760178_3761828_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3761868_3763038_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3763040_3763904_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3767267_3767972_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3767965_3768760_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3768756_3769722_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3769725_3770646_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3770742_3771906_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3772128_3773019_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3773022_3773526_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3773568_3774567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3774563_3775514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3775602_3775890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3776081_3777032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3777091_3777652_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3779154_3780036_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3780149_3781352_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3781480_3783340_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3783417_3784227_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3784297_3785299_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3785330_3786191_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3786390_3787395_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3787391_3788978_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3788986_3789913_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3789935_3790562_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3790660_3791611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3791607_3792744_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3792797_3793574_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3793598_3794057_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3794196_3794838_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3794902_3796285_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|3796310_3797159_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3797317_3797929_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3797938_3798388_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929718.1|3799054_3799216_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3799291_3799507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3799493_3800444_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3801487_3801766_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|3802908_3803457_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929715.1|3803519_3805199_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3805195_3806947_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3806943_3807069_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3807082_3808237_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023852659.1|3808252_3809830_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3809955_3810501_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3811060_3812011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3812741_3813722_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3813735_3814860_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3814867_3816622_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3816728_3817628_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3817692_3818676_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3818811_3819792_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3819808_3821200_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3821351_3821888_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3821818_3823204_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3823346_3823985_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3824071_3825961_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3825957_3826899_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3827004_3828054_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3828306_3829008_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3829004_3829703_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3829703_3831059_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3831055_3831547_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3831565_3832522_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3833932_3836035_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3836205_3837249_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3837292_3838036_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3839057_3839468_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3840417_3841215_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3841313_3842264_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3842260_3843211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3843297_3844248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3844362_3845364_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3845454_3846021_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3846339_3848253_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3848294_3849725_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3849837_3851250_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3851266_3851962_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3852180_3853131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3853155_3854055_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3854209_3854758_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3854796_3855516_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3855686_3858530_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3859123_3861919_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 29
NZ_CP011753	Bordetella pertussis strain J019 chromosome, complete genome	4107558	4006626	4071538	4107558	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006626_4007112_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007200_4007338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007330_4008311_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008577_4009387_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009426_4010107_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4010100_4010559_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010570_4010933_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011015_4011699_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011754_4012063_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4012081_4012396_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012392_4014867_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014874_4016266_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016262_4016448_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016426_4017128_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017124_4017946_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017926_4019051_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019043_4020063_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020268_4021159_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021403_4022195_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022277_4022652_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022629_4024039_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024031_4025414_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025748_4027353_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027430_4028402_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028412_4029339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029729_4030680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030849_4032076_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032275_4033142_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033134_4034097_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034197_4035148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035246_4036197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036295_4037246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037242_4038736_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038732_4041840_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041836_4044905_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044901_4046152_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046332_4047085_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047126_4047771_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047779_4048760_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048859_4049603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049685_4050033_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050130_4050973_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051017_4051905_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051931_4052120_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052217_4053675_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053661_4055188_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055206_4055674_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055673_4056696_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056816_4057557_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057611_4058712_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058713_4059904_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060023_4061040_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061358_4062030_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062026_4062935_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063146_4063794_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067654_4068722_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068732_4069542_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069631_4070405_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070405_4070570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070587_4071538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
