The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	27282	70036	4103226	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	77634	136108	4103226	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	164892	225403	4103226	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	233335	286923	4103226	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	390856	448365	4103226	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	590419	651609	4103226	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591845_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593752_594244_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594262_595336_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595382_596486_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596561_597182_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597202_597712_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597766_598018_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598081_599215_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599222_599609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599605_602125_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602553_602892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602888_603395_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603456_604257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604367_605309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605402_606938_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608617_610468_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610471_611305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611304_612246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612497_613469_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613610_615899_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616205_617114_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617168_618134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618208_619870_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619941_620652_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620618_620783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620800_621751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622449_622833_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622890_623493_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624027_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627086_628136_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628283_628862_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636789_637740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637838_638639_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638700_639084_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639095_640448_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640735_641065_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641067_641817_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641999_642920_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642966_643179_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643201_643624_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643640_644741_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644837_646355_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646430_647270_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647291_648164_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648254_649349_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649642_650593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650667_651609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	656933	703124	4103226	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656933_657959_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657999_658239_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658308_659898_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659897_660446_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660526_661099_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661117_662029_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662102_663071_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663193_664267_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664271_666092_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666168_667119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667207_667543_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667676_668327_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668348_669767_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669836_670592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670560_671319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671329_672211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672227_672935_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672937_673696_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673905_675648_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675640_676165_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676204_676999_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677166_678240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678338_679289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679540_679747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679818_680430_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680984_681236_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681228_681918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681935_682157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682174_683125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683764_684250_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684236_685514_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685516_686935_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686963_688019_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688024_688267_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688389_688992_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689420_690371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691045_691297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691359_691842_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691855_692044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692043_692439_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692435_692834_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692830_693253_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693260_693761_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694015_694534_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694543_694873_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694890_695181_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695206_697819_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697828_698188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698255_698789_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698785_699175_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699167_703124_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	709290	763220	4103226	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709290_711021_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711073_711502_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711504_712185_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712184_712643_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712679_713654_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713670_714987_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715018_715516_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715602_716292_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716291_717341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717337_718132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718300_718651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718626_719184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720313_721264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723401_724631_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724633_726076_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726180_727326_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727357_728155_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728179_729739_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729735_732108_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732217_733321_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733320_734013_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734156_734858_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734842_735220_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735951_736902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737061_737934_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738274_738493_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738532_739912_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739953_741351_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741390_743043_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743046_743931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743930_744872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744950_746570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746736_747552_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747619_748189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748189_749140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749794_750892_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750925_752191_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752348_753299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757815_758340_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758299_759250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759471_761667_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761739_762147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	885809	953785	4103226	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885809_886826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894460_896692_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902411_903362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903358_904078_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904198_906358_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906448_906718_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906806_907013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907011_907539_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907557_908337_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908504_909521_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909593_910085_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910095_911811_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912974_913925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913921_915754_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929332_930208_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930233_931289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934672_935623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938376_939327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939761_941576_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	997314	1069816	4103226	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997314_998265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998369_999419_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999556_1000573_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002081_1002654_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002713_1003445_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003496_1004414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005221_1008401_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008397_1009780_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009849_1010101_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010246_1010861_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011047_1013108_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013237_1014089_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014085_1014712_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014708_1016463_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016755_1019461_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_014905654.1|1019473_1021120_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021132_1022923_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023144_1024320_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024362_1025313_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025411_1026152_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026346_1028383_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028400_1029411_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029528_1030722_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030751_1031525_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031521_1032712_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032737_1033676_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033672_1036021_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036175_1036817_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038146_1038299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038330_1038879_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038897_1039383_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039560_1040499_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040501_1040819_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040864_1041809_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043489_1044140_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044193_1044529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044525_1045386_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045402_1045684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045757_1046021_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046264_1047215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047513_1048251_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048686_1049010_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049044_1049605_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049725_1050601_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050613_1051561_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051662_1051956_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051982_1054040_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054054_1054555_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054628_1056335_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057198_1058251_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058303_1058693_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058701_1059334_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059433_1060450_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061280_1062288_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062284_1063928_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063924_1064812_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064952_1065426_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065415_1066438_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066434_1067862_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068799_1069816_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	1073569	1134596	4103226	transposase,tRNA,holin	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1073569_1074706_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074702_1075776_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075933_1077370_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077460_1078102_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078437_1079454_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082600_1084022_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084285_1085002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085086_1085404_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085444_1085858_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085859_1086219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086261_1087806_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087889_1088720_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088754_1089909_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089951_1090824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090940_1093229_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094435_1094900_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094926_1095877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095894_1096032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096244_1097021_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097065_1097923_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097944_1098961_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099095_1100136_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100330_1102412_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102647_1104141_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104371_1105166_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105386_1106745_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106741_1107584_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107602_1109489_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109430_1109682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109726_1110359_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110377_1110980_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111131_1112082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112662_1113370_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113728_1114715_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114854_1115868_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115864_1116815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116832_1116973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116927_1117386_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117422_1118736_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118753_1119125_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119121_1120585_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120725_1121454_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121435_1124285_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124497_1125448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125615_1126440_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126439_1127318_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128222_1129338_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129366_1130161_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130157_1132023_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132101_1132734_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132730_1133033_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133075_1134596_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	1152166	1217750	4103226	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152166_1153963_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153962_1154931_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155000_1155846_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155913_1156468_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156514_1157465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157563_1158196_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158360_1160643_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160797_1163494_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163619_1164108_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166518_1169389_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169434_1170649_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170878_1172306_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172403_1173495_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173507_1174266_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174353_1175256_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175252_1176203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176332_1177316_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177370_1178093_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179571_1180927_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181007_1183383_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183547_1185623_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185684_1186479_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186586_1187549_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187536_1188292_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188399_1190037_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190104_1190842_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190944_1191520_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191692_1192229_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192261_1192576_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192591_1193437_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193475_1194855_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194932_1195814_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195912_1196863_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196859_1197270_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197377_1198232_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198224_1199187_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199232_1200357_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200462_1201341_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201465_1202245_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202398_1203820_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204254_1205952_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206178_1207120_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207446_1208193_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208200_1209127_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209248_1210166_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210205_1211159_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211183_1211762_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213435_1214044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214121_1214475_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214558_1215548_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215544_1215733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215750_1216701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216799_1217750_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	1316886	1382315	4103226	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1316886_1317837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318605_1319244_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320133_1320580_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320661_1321363_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321363_1322131_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322127_1323366_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323365_1324292_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324394_1325510_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325525_1326476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326829_1327411_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327407_1328241_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328451_1329765_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329941_1330823_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330842_1331694_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331746_1332835_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332945_1334073_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334307_1334919_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335017_1335968_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336189_1336567_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336714_1337212_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337208_1337736_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337869_1338685_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338697_1339879_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339926_1340820_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340946_1341417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341542_1342370_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342398_1343175_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343171_1343447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343461_1343926_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343937_1344639_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1344748_1345249_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345331_1346510_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348137_1348473_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348660_1350109_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350166_1350511_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350617_1351157_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351249_1352200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1352217_1352457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352938_1353370_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1353551_1353956_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355192_1355516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355518_1356406_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356438_1356864_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356935_1357289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357528_1358035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358073_1359405_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359464_1360280_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360276_1361131_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364193_1366737_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368103_1369858_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369854_1371975_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1371979_1374175_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374171_1377513_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|1380315_1381266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930208.1|1381364_1382315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	1446913	1502401	4103226	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446913_1447864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449065_1449512_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449504_1450980_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450976_1451732_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451724_1452735_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452724_1454401_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454713_1455046_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455059_1455455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455464_1455791_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455787_1456114_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456040_1457063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457059_1457410_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457457_1457886_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457893_1459267_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459407_1459785_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460047_1461355_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461415_1462246_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462242_1462731_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462772_1464293_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464336_1464813_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465616_1468214_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468243_1469065_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469791_1470541_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470724_1471603_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471700_1472417_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472431_1472992_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473158_1473923_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473942_1474800_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474796_1475996_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476035_1477370_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477422_1479759_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479884_1480448_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480456_1481548_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481619_1482075_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482075_1482870_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482866_1484048_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484034_1484640_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484636_1485410_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485421_1486249_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486410_1488774_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488841_1489561_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489684_1490110_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490144_1491095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491212_1492139_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492204_1493362_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493342_1493810_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493957_1494908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494924_1495359_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495348_1495699_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495895_1497050_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497046_1498219_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498266_1499160_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499205_1499643_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499702_1500392_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500401_1501352_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501450_1502401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	1794971	1842986	4103226	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1794971_1795922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1796020_1796971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1797069_1799670_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1799776_1800781_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1800889_1802230_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1802270_1803299_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1803494_1804040_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1804036_1804597_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1804695_1805646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1805683_1806271_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1806288_1806672_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1808031_1809324_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1809458_1810499_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1810596_1811613_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1811880_1812516_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1812653_1813412_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1813396_1814176_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1814193_1815078_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1815074_1815854_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1815880_1816558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1816846_1817599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1817717_1819118_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1819141_1819540_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1819715_1819916_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1820054_1820783_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1820916_1822332_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1822335_1823199_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1823211_1823961_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1824203_1826159_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1826140_1826809_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1827583_1828534_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1828682_1829021_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1829078_1829240_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1829271_1829472_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1829737_1832311_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1832381_1834931_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1837481_1837970_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1838061_1839213_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1839266_1840088_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1840126_1841356_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1841484_1841925_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1842035_1842986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	1904548	1963818	4103226	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1904548_1905499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1905623_1906433_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1906633_1907584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1908857_1910075_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1911131_1912034_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1912110_1912983_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1913113_1913482_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1913539_1914586_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1914781_1916038_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1916042_1917380_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1917529_1918486_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1918588_1919521_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1919636_1919957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1919949_1920309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1920356_1921931_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1921983_1922928_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1922945_1923776_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1923768_1925403_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1925399_1926755_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1927661_1929239_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1929242_1930517_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1930614_1930989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1932704_1933838_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1933875_1934481_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1934477_1935296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1935367_1937992_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1937978_1938233_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_077069228.1|1938299_1938881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1939184_1939445_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1939610_1940234_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1940233_1941007_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1941003_1942212_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1942237_1942711_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1942784_1943735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1943833_1944784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1944882_1946232_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1946997_1947753_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1947845_1950728_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1951050_1951476_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1951503_1952652_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1952648_1953155_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1953170_1954457_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1954506_1955802_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1955803_1956442_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1956447_1957605_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1957631_1958987_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1958990_1960061_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1960199_1960436_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1960523_1961630_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1961595_1962900_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1962918_1963818_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	1974058	2031555	4103226	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_005013747.1|1974058_1975009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1975208_1976294_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1976309_1977071_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1977067_1977991_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1978089_1978614_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1978622_1979366_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1979461_1979701_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1979714_1979867_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1979952_1981443_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1981534_1982473_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1982469_1982646_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1982648_1983311_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1984932_1985076_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1985072_1986047_-	membrane protein	NA	NA	NA	NA	NA
WP_162300163.1|1985941_1986196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1986213_1987164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1987160_1988435_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1988538_1989732_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1989728_1990382_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1990378_1991815_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1991802_1992162_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1992976_1993117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1993134_1994085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1995130_1996996_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997253_1998774_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1998861_1999512_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2000460_2001756_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2001777_2002662_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2002760_2003636_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003625_2003982_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2004112_2005087_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005216_2005396_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005493_2006018_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006028_2006865_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006977_2007349_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007345_2007897_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2007912_2009604_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009652_2010333_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010580_2011045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011214_2012144_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012156_2012804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2012877_2014695_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2014778_2015729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2016381_2017332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2017350_2017698_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2017726_2019166_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2019184_2019580_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2019754_2020363_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2020375_2021194_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2021145_2022120_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2022148_2023210_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2023206_2025423_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2025436_2025895_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2026052_2026397_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2026553_2027459_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2027545_2028559_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2030538_2031555_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	2047105	2111474	4103226	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2047105_2048056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2048277_2049228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049326_2050292_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2050429_2051329_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2053923_2055411_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055421_2056618_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056690_2058010_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058006_2058882_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2058912_2060061_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060078_2060393_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060414_2061137_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061136_2061955_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061959_2062487_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2062492_2063749_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064107_2065247_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065324_2066197_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067067_2068018_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067977_2068613_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068972_2070295_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2070613_2071435_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2072859_2073432_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073471_2075301_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075263_2076322_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076359_2076821_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2076905_2077652_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079142_2082373_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082439_2083771_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084023_2084398_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084500_2085679_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085689_2086280_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086390_2087197_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2087222_2088017_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089017_2089992_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090150_2090663_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2090819_2091791_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093535_2094342_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2094338_2095640_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2095590_2096355_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096468_2097239_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2097323_2098511_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098583_2098958_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2099058_2100321_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100317_2101175_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101347_2102349_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2102800_2103751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2105314_2106466_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2106834_2107071_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107134_2107302_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2107415_2109311_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2109474_2110425_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2110523_2111474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	2297942	2359290	4103226	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297942_2298893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299009_2299729_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299901_2300888_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300888_2301371_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301374_2302658_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302654_2303593_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303589_2305299_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305308_2306556_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308166_2309456_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2310593_2311367_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2312028_2312772_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312846_2313587_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313782_2314619_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314669_2315440_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315489_2316542_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316538_2317165_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2317161_2318196_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318374_2319391_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319489_2320440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323180_2324470_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2324588_2325026_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325069_2326278_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326424_2326889_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326912_2327863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328847_2329621_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329617_2330616_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330700_2331477_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2331632_2333237_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2333617_2334742_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334868_2335492_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335488_2337390_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337438_2338233_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338245_2339247_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2339243_2339693_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2339742_2340591_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340688_2341231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341274_2342225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342380_2342707_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2342703_2342985_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2342984_2343464_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343460_2345089_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345085_2345430_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345429_2348363_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349521_2350472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350570_2350867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350973_2351891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351895_2352609_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352622_2353594_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2355343_2355694_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355697_2356885_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2357323_2358046_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358339_2359290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	2380081	2451235	4103226	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2380081_2381032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381584_2383210_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383259_2384294_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384296_2385643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2385639_2387154_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387144_2388155_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388628_2389570_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389578_2390547_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392086_2393055_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393232_2394222_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394268_2395027_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395216_2395954_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2396052_2397003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397187_2397970_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397963_2398665_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2398904_2399507_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2400833_2401784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2401780_2403337_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403329_2404103_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404161_2405112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405193_2406369_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2406382_2408440_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408436_2409462_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2409473_2410763_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2410785_2411883_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2411879_2412770_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2412766_2414851_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2414882_2416052_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2416093_2416834_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2416833_2417604_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2418459_2419245_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2419271_2421356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2421523_2423479_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2423802_2424303_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2424401_2425928_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2426065_2426953_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2426967_2427921_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2427972_2430063_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2430078_2430465_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2433158_2433962_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2435255_2436158_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2436222_2436999_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2437320_2438370_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2438493_2440164_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2440168_2440963_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2441061_2442012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2442031_2442937_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2443014_2443713_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2443872_2444817_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2444826_2446314_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2446313_2447381_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2447444_2448857_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2449042_2450263_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2450284_2451235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	2535436	2586608	4103226	transposase,tRNA	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2535436_2536387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2536485_2537256_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2537252_2537924_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2537920_2538562_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2538574_2539495_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2539655_2540816_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2540857_2541808_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2542406_2542631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2542795_2544490_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2544611_2544881_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2544996_2545395_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2545405_2546362_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2546498_2547044_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2547064_2549014_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2549401_2550178_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2550183_2550576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2550997_2551948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2551944_2553042_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2553073_2554024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2555805_2557047_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557058_2557832_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2557858_2558809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2558907_2559690_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2559778_2561005_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2561730_2563116_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563134_2563740_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2563736_2565593_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2565589_2566390_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2566404_2567598_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2567665_2568640_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2568762_2569986_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570096_2572301_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2572595_2573255_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2573262_2573469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2573807_2574563_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2574833_2575349_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2575621_2575939_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2576126_2576363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2576653_2578009_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2578055_2579396_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2579497_2580130_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2580129_2582499_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2582531_2583491_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2583477_2584164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2584160_2584493_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2584608_2585559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2585657_2586608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	2684903	2725565	4103226	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684903_2685854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685964_2686147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686246_2686843_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687026_2688118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688610_2689021_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2689079_2689409_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2689426_2691844_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691856_2692879_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692953_2693313_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693328_2693526_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_005012808.1|2693861_2694812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695006_2695456_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695452_2696403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696513_2697962_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2698076_2698322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698461_2699412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699656_2700370_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700492_2700720_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701014_2701653_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701761_2702796_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702792_2703743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704158_2704683_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704686_2704956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705154_2706216_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706299_2707934_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707935_2708739_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708767_2709727_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709730_2711245_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711281_2712286_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712717_2713188_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713223_2713835_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713865_2714489_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714569_2716102_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2716136_2717354_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717421_2718453_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718449_2719619_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719612_2720293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720454_2721297_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721459_2722431_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722602_2723481_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723503_2724574_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724614_2725565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	2729676	2811811	4103226	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2729676_2730627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247978.1|2731376_2731790_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2731803_2733039_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2733046_2733841_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2733837_2734641_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2734667_2735645_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2735673_2737245_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2737255_2738077_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2739801_2741232_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2741244_2741934_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2742029_2743370_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2743371_2743629_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2743982_2745575_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2745671_2747132_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2747354_2747966_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2751712_2752663_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2753078_2755715_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2755711_2756836_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2756832_2758215_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2758350_2758818_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931045.1|2759679_2760882_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2760883_2762614_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2762731_2763040_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2763052_2763865_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2764745_2766911_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2767036_2767825_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2767864_2769469_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2769549_2770290_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2770297_2770792_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2771164_2772184_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2772180_2773563_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2773595_2774456_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2775459_2776341_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2776399_2776837_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2776927_2777899_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2777937_2778882_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2778977_2779787_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2779863_2780238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2780344_2781037_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2781029_2781446_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781556_2782189_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782217_2782661_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782682_2783774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783828_2784629_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784764_2785385_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785524_2785998_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787137_2788088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788084_2795746_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2795986_2800033_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800345_2800927_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800923_2802222_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802301_2803330_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803590_2804541_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804537_2805488_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805804_2806410_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806463_2807777_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807851_2808322_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808321_2809110_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809120_2810773_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_005012067.1|2810860_2811811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	2835736	2892709	4103226	protease,transposase	Pelagibacter_phage(20.0%)	45	NA	NA
WP_005012067.1|2835736_2836687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836821_2837928_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837938_2839036_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839180_2840386_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840392_2840914_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2840910_2841393_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841398_2841650_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841630_2842116_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842251_2845713_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845730_2846615_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846624_2847056_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847302_2847806_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847883_2849284_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849358_2850234_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850230_2851238_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851705_2852011_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852101_2852692_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852882_2853899_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2854090_2856427_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2856509_2856944_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2857042_2857993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2857989_2858784_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858815_2859520_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859594_2860395_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860391_2860799_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860795_2861437_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2861429_2863430_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864690_2866022_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866018_2866969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868675_2868942_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869649_2869988_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874541_2875144_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875240_2876530_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876587_2877319_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877315_2878119_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878115_2879204_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879200_2880130_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880278_2881424_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881445_2882396_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2882413_2882572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2882726_2886548_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886704_2887373_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2887377_2889051_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2889069_2890389_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2890393_2892709_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
>prophage 25
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	2900208	3022080	4103226	transposase,protease	uncultured_Mediterranean_phage(12.5%)	117	NA	NA
WP_003820400.1|2900208_2900523_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900750_2900996_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901090_2901609_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901708_2902914_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2903029_2904427_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904543_2905122_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905194_2906586_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906753_2907704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2907984_2908605_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908601_2909015_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2909011_2910055_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910110_2910299_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910308_2911073_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911163_2911820_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911911_2912670_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912695_2914297_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914497_2915502_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915602_2915866_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2915983_2916760_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917350_2918301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920684_2921797_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2921853_2922804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|2922821_2923088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2923012_2923234_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2923447_2924854_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2924850_2926155_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2926151_2927339_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2927555_2928008_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2928010_2928475_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2928554_2930234_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2930338_2931316_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2931395_2932364_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2932384_2933758_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2933754_2934591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2934707_2935163_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2935178_2935451_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2935543_2935867_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2935914_2936295_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2936514_2937312_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2937468_2939331_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2939380_2940292_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2940296_2940563_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2940649_2941480_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2941654_2942620_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2942790_2943801_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2943948_2945100_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2946242_2947715_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2947725_2948136_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2948199_2949246_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2949352_2950231_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2950244_2951441_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2951502_2953194_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2953190_2954141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2954158_2954308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2954261_2955158_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957435_2959661_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959825_2960914_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960870_2961524_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961571_2962369_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962900_2963851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2963931_2965080_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965136_2966087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2966185_2966491_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966519_2966954_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966955_2968200_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968196_2968907_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968921_2969833_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970195_2970600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970596_2971055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2971061_2971970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2971966_2972833_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972819_2973647_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973657_2974785_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975862_2977101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977142_2978405_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978411_2979164_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979215_2979401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979676_2980141_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980172_2980832_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980976_2983085_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983081_2984032_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984135_2984756_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2984859_2985600_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986734_2987859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987904_2988273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988514_2989465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990500_2991043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2991240_2991411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991428_2992379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2992375_2993284_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2993410_2994247_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2994759_2995869_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2995930_2996881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2997073_2997856_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|2997869_2998634_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|2998646_2999993_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3000018_3000948_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3001063_3001969_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3001986_3003186_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3003258_3003951_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3003999_3006426_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3006470_3007421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698394.1|3007438_3007585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809026.1|3007637_3008006_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3008292_3009219_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3009262_3010273_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3010269_3010704_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3011829_3012618_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3012627_3013410_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3013413_3014505_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3014610_3016086_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3016227_3016776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3016791_3017253_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3017353_3018343_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3018641_3019343_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3019381_3020755_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3020793_3022080_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	3377875	3431616	4103226	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3377875_3378826_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379230_3379875_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379899_3380484_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380584_3381202_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381204_3382920_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382916_3383225_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383241_3383859_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383903_3384206_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384306_3385161_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385348_3385573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385742_3386015_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386432_3386840_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387209_3388004_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388104_3389340_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389408_3390425_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390436_3391813_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391809_3393006_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393002_3394541_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394537_3395797_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3397737_3398688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399454_3400549_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400541_3401876_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401829_3402513_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3402538_3403702_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3403698_3404700_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404699_3405572_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405568_3406318_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406314_3407106_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407102_3408242_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408517_3409303_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409336_3410119_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410122_3410512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3411651_3412515_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3412550_3413639_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413635_3414586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414939_3417918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418844_3419723_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421671_3422622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422618_3423086_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423128_3423899_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423919_3424720_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424730_3426140_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426234_3427020_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427259_3428276_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428383_3428776_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428913_3429594_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429598_3430570_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430665_3431616_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	3437771	3497071	4103226	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3437771_3439535_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439646_3440525_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440637_3441453_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441456_3441708_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441792_3442809_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443139_3443361_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445721_3446639_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447136_3448345_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448424_3449996_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450113_3451049_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451237_3452182_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452749_3458467_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458472_3459600_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459655_3460282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3460553_3461570_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461665_3462376_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462372_3463362_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463457_3465089_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465091_3465829_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3465984_3466857_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3467206_3468346_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468342_3469002_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469073_3469706_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469735_3470254_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470264_3471374_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471420_3472275_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472276_3473179_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474401_3475352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477108_3478098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478273_3479062_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479058_3480090_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480108_3480672_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480727_3482248_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482511_3483216_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3483223_3483952_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484066_3484441_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484483_3485773_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485769_3486939_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486935_3487775_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487834_3488770_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488782_3489733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489831_3490794_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490825_3491185_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491309_3492212_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492213_3493986_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494020_3494797_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496120_3497071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	3512009	3570082	4103226	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512009_3512960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513088_3514222_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514265_3515171_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515173_3516874_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516870_3517791_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517798_3518776_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518834_3519869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521843_3522080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3522206_3523070_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523158_3523980_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524059_3524797_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524793_3525786_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3525938_3526562_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526606_3527755_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_077069229.1|3530078_3531029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531369_3532320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532418_3533369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533665_3534163_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534205_3535981_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3535988_3536855_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536861_3537596_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538765_3539560_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539849_3540440_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540473_3541802_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541876_3543022_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543133_3544132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544094_3544529_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546045_3546930_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546926_3548132_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548128_3548989_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549101_3550892_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3550932_3551577_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3551598_3551907_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552072_3553359_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554792_3555743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557694_3558909_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559014_3560004_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560000_3560609_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560621_3561251_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561247_3561868_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561899_3562691_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563542_3563998_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564016_3564943_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3564996_3566283_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567213_3568086_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568082_3569033_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569131_3570082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011752	Bordetella pertussis strain J016 chromosome, complete genome	4103226	4002294	4067206	4103226	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4002294_4002780_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4002868_4003006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4002998_4003979_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004245_4005055_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005094_4005775_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4005768_4006227_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006238_4006601_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4006683_4007367_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007422_4007731_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4007749_4008064_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008060_4010535_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4010542_4011934_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4011930_4012116_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012094_4012796_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4012792_4013614_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4013594_4014719_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4014711_4015731_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4015936_4016827_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017071_4017863_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4017945_4018320_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018297_4019707_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4019699_4021082_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021416_4023021_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4023098_4024070_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024080_4025007_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025397_4026348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026517_4027744_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027943_4028810_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028802_4029765_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029865_4030816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030914_4031865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031963_4032914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032910_4034404_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034400_4037508_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037504_4040573_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040569_4041820_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4042000_4042753_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4042794_4043439_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4043447_4044428_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044527_4045271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045353_4045701_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045798_4046641_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046685_4047573_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047599_4047788_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047885_4049343_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049329_4050856_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050874_4051342_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051341_4052364_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4052484_4053225_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053279_4054380_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054381_4055572_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055691_4056708_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057026_4057698_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057694_4058603_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058814_4059462_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4063322_4064390_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064400_4065210_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065299_4066073_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4066073_4066238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4066255_4067206_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
