The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	0	59497	4110595	transposase,tRNA	Natrialba_phage(12.5%)	52	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	70134	123122	4110595	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	165941	226452	4110595	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165941_166892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168335_169238_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170127_171558_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171591_172221_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172269_173877_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173901_174585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174666_175143_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175349_176300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177415_177943_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178034_178850_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178910_179645_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179682_181761_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182010_182283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182384_183470_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183473_185378_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185374_189049_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189109_189673_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189680_190103_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190130_190550_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190578_191052_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191151_191649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191803_194074_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194122_195355_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195453_196404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196506_197142_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197138_198032_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198426_199527_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199608_199983_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200042_202907_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203051_203792_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203861_205073_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205101_206070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206683_207634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207790_208114_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208218_209259_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209264_210044_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210089_210386_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210411_210687_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210743_211388_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211387_212074_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212203_213055_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213105_213831_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213862_215212_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215323_216256_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216713_219509_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220102_223045_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223116_223836_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223874_224423_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224577_225477_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225501_226452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	234384	287972	4110595	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_010929591.1|234384_235335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235421_236372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236368_237319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237417_238215_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239164_239575_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240596_241340_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241383_242427_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242597_244700_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246110_247067_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247085_247577_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247573_248929_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248929_249628_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249624_250326_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250578_251628_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251733_252675_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252671_254561_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254647_255286_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255428_256814_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256744_257281_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257432_258824_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258840_259821_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259956_260940_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261004_261904_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262010_263765_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263772_264897_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264910_265891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266621_267572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268131_268677_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268760_270380_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270395_271550_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271563_271689_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271685_273437_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273433_275113_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275175_275724_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276866_277145_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278188_279139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279156_279303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279416_279578_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279585_279726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280244_280694_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280703_281315_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281473_282328_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282347_283730_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283794_284436_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284575_285034_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285058_285835_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285888_287025_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287021_287972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	391905	449414	4110595	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_010929591.1|391905_392856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392992_393910_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393906_394155_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394151_395357_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395429_396425_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396447_397668_-	CoA transferase	NA	NA	NA	NA	NA
WP_054604412.1|397664_398309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400039_400849_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401153_402107_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402205_403189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403115_403817_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403865_404636_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404632_405811_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405978_407685_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407681_408578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408618_410208_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410257_411250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411318_411918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412378_413359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413434_414385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414473_415388_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415384_416044_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416133_417057_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417062_417518_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417514_418618_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418576_418846_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418805_420425_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420421_421480_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421609_422104_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422196_423174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423369_424575_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424571_426083_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426098_427412_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427602_427782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428191_428926_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431370_432321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432452_432851_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433261_433732_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433820_434165_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434264_435665_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437453_437972_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438082_438838_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439033_440266_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440258_441044_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441110_442082_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442092_443070_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443195_444368_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444394_445423_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445488_446682_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448463_449414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	591468	652658	4110595	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591468_592419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592915_593785_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593781_594603_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594801_595293_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595311_596385_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596431_597535_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597610_598231_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598251_598761_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598815_599067_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599130_600264_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600271_600658_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600654_603174_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603602_603941_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603937_604444_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604505_605306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605416_606358_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606451_607987_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609666_611517_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611520_612354_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612353_613295_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613546_614518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614659_616948_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617254_618163_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618217_619183_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619257_620919_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620990_621701_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621667_621832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621849_622800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623498_623882_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623939_624542_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624559_624961_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625094_625988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625984_626566_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627360_628095_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628135_629185_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629332_629911_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630297_631275_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631368_635763_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635963_636812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636970_637783_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637838_638789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638887_639688_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639749_640133_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640144_641578_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641784_642114_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642116_642866_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643048_643969_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644015_644228_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644250_644673_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644689_645790_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645886_647404_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647479_648319_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648340_649222_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649303_650398_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650691_651642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651716_652658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	657982	704173	4110595	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657982_659008_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659048_659288_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659357_660947_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660946_661495_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661575_662148_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662166_663078_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663151_664120_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664242_665316_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665320_667141_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667217_668168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668256_668592_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668725_669376_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669397_670816_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670885_671641_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671609_672368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672378_673260_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673276_673984_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673986_674745_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674954_676697_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676689_677214_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677253_678048_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678215_679289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679387_680338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680589_680796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680867_681479_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682033_682285_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682277_682967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682984_683206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683223_684174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684813_685299_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685285_686563_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686565_687984_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688012_689068_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689073_689316_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689438_690041_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690469_691420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692094_692346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692408_692891_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692892_693093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693092_693488_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693484_693883_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693879_694302_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694309_694810_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695064_695583_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695592_695922_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695939_696230_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696255_698868_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698877_699237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699304_699838_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699834_700224_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700216_704173_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	710339	764269	4110595	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710339_712070_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712122_712551_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712553_713234_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713233_713692_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713728_714703_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714719_716036_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716067_716565_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716651_717341_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717340_718390_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718386_719181_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719349_719700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719675_720233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721362_722313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724450_725680_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725682_727125_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727229_728375_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728406_729204_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729228_730788_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730784_733157_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733266_734370_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734369_735062_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735205_735907_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735891_736269_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737000_737951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738110_738983_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739323_739542_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739581_740961_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741002_742400_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742439_744092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744095_744980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744979_745921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745999_747619_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747785_748601_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748668_749238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749238_750189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750843_751941_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751974_753240_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753397_754348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754591_755182_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755197_757642_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757761_758733_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758864_759389_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759348_760299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760520_762716_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762788_763217_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763318_764269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	815862	864884	4110595	holin,transposase	Acinetobacter_phage(25.0%)	44	NA	NA
WP_010931070.1|815862_816813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|816911_817862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|817960_818617_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|818764_821473_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|821482_822502_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|822498_823449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|823547_824036_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|824032_824716_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|824745_828201_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|828236_829097_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|829225_830143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|830280_831261_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|831320_833111_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|833107_833884_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|833893_834412_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|834524_836795_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|837006_839238_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|839538_839868_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|839884_841369_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|841379_842882_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|842878_844891_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|844908_845217_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|845213_845861_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|845878_846367_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|846388_847462_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|847461_849789_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|849804_851172_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|851168_851663_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|851708_852965_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|852967_853591_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|853665_854142_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|854178_854538_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|854726_855884_-	porin	NA	NA	NA	NA	NA
WP_023998171.1|855984_856179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|856196_857147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|857164_857719_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|857720_858155_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|858151_858586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|858569_859373_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|859389_860205_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|860201_861017_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|861163_861865_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861892_863851_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863933_864884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	887907	941425	4110595	holin,transposase	Acidithiobacillus_phage(33.33%)	44	NA	NA
WP_023994644.1|887907_888924_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889120_890104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891702_893091_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893121_894111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894221_895454_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895735_896536_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896558_898790_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|899577_900024_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_077069118.1|900045_900792_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900935_901913_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902546_903158_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903151_904369_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904509_905460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905456_906176_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906296_908456_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908546_908816_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|909109_909637_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909655_910435_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910602_911619_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911691_912183_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912193_913909_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915072_916023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916019_917852_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918250_918910_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|919003_919150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|919258_919426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|919437_920118_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920399_921116_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921130_922432_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|924576_927465_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927688_929041_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929069_929591_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929587_931042_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931076_931325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931430_932306_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932331_933387_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933399_934191_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934223_935594_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936770_937721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937773_937995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938154_938367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938486_939605_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|940110_940362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940474_941425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	954932	1027426	4110595	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_005012067.1|954932_955883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|955879_956854_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|956978_957890_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958166_958559_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|958688_959639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|959668_959851_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|960623_961805_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|962020_962698_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|962694_963420_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|963545_964127_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|964497_967179_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|967178_968312_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|968304_969390_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|969476_970376_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|970372_971701_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|971715_972387_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|972574_974290_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|974291_974651_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|974842_975157_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|975199_976420_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|976416_977358_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|977354_978344_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|978378_978963_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|979061_980012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|980092_981004_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|981064_982210_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|982229_983144_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|983215_983965_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|983964_984894_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|985137_986964_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|987046_987688_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|987910_988912_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|990748_991813_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|992610_993519_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|995006_996281_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|996434_996815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|996822_997695_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|998000_998381_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|998591_999317_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|999412_1000363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000467_1001517_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001654_1002671_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004179_1004752_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004811_1005543_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005594_1006512_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007319_1010499_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010495_1011878_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011947_1012199_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012344_1012959_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1013145_1015260_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015335_1016187_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016183_1016810_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016806_1018561_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018853_1021559_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021571_1023233_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023245_1025036_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025257_1026433_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1026475_1027426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	1039033	1087972	4110595	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
WP_023853531.1|1039033_1040167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1040259_1040412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040443_1040992_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1041010_1041496_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041673_1042612_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042614_1042932_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042977_1043922_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045602_1046253_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046306_1046642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046638_1047499_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047515_1047797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047870_1048134_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048377_1049328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049626_1050364_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050799_1051123_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051157_1051718_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051838_1052714_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052726_1053674_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053775_1054069_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054095_1056153_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056167_1056668_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056741_1058448_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059311_1060364_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060416_1060806_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060814_1061447_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061546_1062563_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1063351_1064401_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064397_1066041_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066037_1066925_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067065_1067539_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067528_1068551_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068547_1069975_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070912_1071929_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072261_1073197_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073246_1075127_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075193_1075538_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075682_1076819_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076815_1077889_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078046_1079483_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079573_1080215_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080550_1081567_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084714_1086136_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086399_1087116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087200_1087518_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087558_1087972_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 13
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	1097040	1159579	4110595	tRNA,protease,transposase	Planktothrix_phage(18.18%)	50	NA	NA
WP_005013747.1|1097040_1097991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098008_1098146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098358_1099135_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099179_1100037_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100058_1101075_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101209_1102250_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102444_1104526_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104761_1106255_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106485_1107280_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107500_1108859_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108855_1109698_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109716_1111603_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111544_1111796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111840_1112473_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112491_1113094_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113245_1114196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114776_1115484_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115842_1116829_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116968_1117982_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117978_1118929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118946_1119087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119041_1119500_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119536_1120850_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120867_1121239_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121235_1122699_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122839_1123568_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123549_1126399_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126611_1127562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127729_1128554_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128553_1129432_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130336_1131452_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131480_1132275_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132271_1134137_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134215_1134848_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134844_1135147_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135189_1136710_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1136716_1137472_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1137501_1138606_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1138708_1140409_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1140390_1141368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141377_1142658_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1142650_1143346_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143379_1144207_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1144488_1147719_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1148454_1152381_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1155213_1156077_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1156076_1157045_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157114_1157960_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158027_1158582_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158628_1159579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	1319000	1384429	4110595	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1319000_1319951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320719_1321358_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322247_1322694_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322775_1323477_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323477_1324245_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324241_1325480_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325479_1326406_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326508_1327624_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327639_1328590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328943_1329525_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329521_1330355_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330565_1331879_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332055_1332937_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332956_1333808_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333860_1334949_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335059_1336187_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336421_1337033_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337131_1338082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338303_1338681_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338828_1339326_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339322_1339850_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339983_1340799_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340811_1341993_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342040_1342934_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343060_1343531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343656_1344484_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344512_1345289_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345285_1345561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345575_1346040_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346051_1346753_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346862_1347363_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347445_1348624_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350251_1350587_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350774_1352223_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352280_1352625_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352731_1353271_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353363_1354314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1354412_1355363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1355380_1355620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356101_1356533_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1356714_1357119_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358355_1358679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358681_1359569_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359601_1360027_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360098_1360452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360691_1361198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361236_1362568_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362627_1363443_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363439_1364294_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367356_1369900_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371266_1373021_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373017_1375138_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375142_1377338_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377334_1380676_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383478_1384429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	1449027	1504515	4110595	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449027_1449978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451179_1451626_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451618_1453094_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453090_1453846_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453838_1454849_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454838_1456515_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456827_1457160_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457173_1457569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457578_1457905_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1457901_1458228_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458154_1459177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459173_1459524_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459571_1460000_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460007_1461381_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461521_1461899_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462161_1463469_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463529_1464360_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464356_1464845_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464886_1466407_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466450_1466927_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467730_1470328_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470357_1471179_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471905_1472655_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472838_1473717_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473814_1474531_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474545_1475106_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475272_1476037_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476056_1476914_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476910_1478110_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478149_1479484_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479536_1481873_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481998_1482562_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482570_1483662_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483733_1484189_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484189_1484984_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484980_1486162_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486148_1486754_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486750_1487524_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487535_1488363_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488524_1490888_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490955_1491675_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491798_1492224_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1492258_1493209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493326_1494253_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494318_1495476_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495456_1495924_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496071_1497022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497038_1497473_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497462_1497813_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498009_1499164_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1499160_1500333_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500380_1501274_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501319_1501757_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501816_1502506_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502515_1503466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1503564_1504515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	1599212	1667298	4110595	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1599212_1599701_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1599818_1600397_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1600502_1600871_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1600969_1601920_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1601926_1603039_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1603725_1604928_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1604963_1605110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1605131_1607792_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1607804_1611209_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1611876_1614102_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614148_1614475_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1614525_1615134_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615232_1616183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616252_1617017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1617013_1617613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617716_1618568_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618627_1619254_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619250_1620201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620299_1621412_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621401_1622403_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622508_1624020_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624016_1625321_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625432_1625993_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626260_1626815_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627270_1627486_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627740_1630338_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630334_1631522_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1632180_1632795_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1632883_1634011_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634022_1634928_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635820_1636771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636952_1637705_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637773_1638433_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638429_1639158_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639170_1641450_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641474_1641678_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641719_1642352_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642487_1643405_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643401_1644115_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644352_1645123_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645127_1645727_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645971_1647462_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647520_1647805_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1647942_1648098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1648370_1649297_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649433_1650174_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650340_1651717_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651898_1652804_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654455_1656258_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1656384_1657026_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657124_1658075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1658096_1659317_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1659502_1660915_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1660978_1662046_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1662045_1663533_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1663542_1664487_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1664646_1665345_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1665422_1666328_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1666347_1667298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	1703247	1758838	4110595	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_010931070.1|1703247_1704198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704256_1705030_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705022_1706579_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706575_1707526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708852_1709455_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709694_1710396_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710389_1711172_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711356_1712307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712405_1713143_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713332_1714091_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714137_1715127_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715304_1716273_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717812_1718781_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718789_1719731_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720204_1721215_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721205_1722720_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722716_1724063_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1724065_1725100_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725149_1726775_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727327_1728278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728382_1729330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729383_1731198_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731190_1731865_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731994_1735069_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735082_1735382_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735696_1736320_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1736563_1737433_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737410_1738355_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738440_1739367_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739479_1740259_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740249_1741446_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741476_1742427_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742648_1743338_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743402_1744158_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744209_1745202_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745211_1746165_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746280_1747243_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748644_1749073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749069_1750020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1750313_1751051_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751474_1752662_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1752665_1753046_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754765_1755737_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755750_1756464_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756468_1757386_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757492_1757789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757887_1758838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	1992652	2062304	4110595	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992652_1995310_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995387_1996590_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996586_1997099_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997221_1997659_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997935_1998886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998984_1999935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|2000188_2001994_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2002107_2002275_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002338_2002575_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2002943_2004143_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2005658_2006609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007060_2008062_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008234_2009092_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009088_2010351_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010451_2010826_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2010898_2012086_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012170_2012941_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013054_2013819_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013769_2015071_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2015067_2015874_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2017618_2018590_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018746_2019259_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019417_2020392_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021392_2022187_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022212_2023019_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023129_2023720_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023730_2024909_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025011_2025386_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025638_2026970_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027036_2030267_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031757_2032504_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032588_2033050_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033087_2034146_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034108_2035938_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035977_2036550_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037974_2038796_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039114_2040437_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040796_2041432_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041391_2042342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043212_2044085_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044162_2045302_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045660_2046917_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046922_2047450_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047454_2048273_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048272_2048995_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049016_2049331_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049348_2050497_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050527_2051403_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051399_2052719_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052791_2053988_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2053998_2055486_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058080_2058980_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059117_2060083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060181_2061132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061353_2062304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	2073800	2123196	4110595	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073800_2074751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075888_2076185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076359_2077712_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077854_2078871_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080850_2081864_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2081950_2082856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083012_2083357_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2083514_2083973_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083986_2086203_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086199_2087261_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087289_2088264_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088215_2089034_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089046_2089655_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2089829_2090225_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090243_2091683_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091711_2092059_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092077_2093028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2093680_2094631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094714_2096532_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096605_2097253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097265_2098195_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098364_2098829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099076_2099757_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099805_2101497_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2101512_2102064_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102060_2102432_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2102544_2103381_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103391_2103916_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104013_2104193_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2104322_2105297_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105427_2105784_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2105773_2106649_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106747_2107632_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107653_2108949_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109897_2110548_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2110635_2112156_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112413_2114279_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115324_2116275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2116292_2116433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2117247_2117607_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2117594_2119031_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119027_2119681_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2119677_2120871_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2120974_2122249_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2122245_2123196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	2134400	2175091	4110595	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2134400_2135351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2135449_2136400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2136359_2136773_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137057_2137357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2137766_2140049_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2140734_2142765_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2142784_2142997_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2143274_2143814_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2143927_2145223_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2145299_2146457_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2146640_2147540_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2147558_2148863_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2148828_2149935_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150022_2150259_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2150397_2151468_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2151471_2152827_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2152853_2154014_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154016_2154655_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2154656_2155943_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2156001_2157297_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2157303_2157810_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2157806_2158955_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2158982_2159408_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2159730_2162613_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2162705_2163461_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2164226_2165576_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2165674_2166625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2166723_2167674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2167747_2168221_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2168246_2169455_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2169451_2170225_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2170224_2170848_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171013_2171274_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2171577_2172159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2172225_2172480_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2172466_2175091_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 21
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	2202874	2268423	4110595	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2202874_2203825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204025_2204835_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2204959_2205910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205906_2206800_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206924_2207119_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207118_2207460_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2207469_2209332_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2209461_2209974_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209976_2210300_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210301_2210712_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210749_2211961_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211978_2212491_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212706_2213198_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213450_2215487_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2215564_2216767_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2216895_2217546_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219103_2220054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220624_2220837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220854_2221586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221620_2222262_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222254_2222923_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225135_2225912_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225933_2227091_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227087_2227519_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2227515_2228319_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2228332_2228734_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228800_2229772_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229837_2231061_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231288_2232239_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232362_2234816_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235004_2236309_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236413_2237067_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237069_2238380_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2238576_2239137_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239248_2239449_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239794_2240361_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240444_2240648_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240954_2241275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241316_2241598_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241672_2242929_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243311_2243641_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245211_2246033_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246032_2247172_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247178_2248075_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2248071_2249997_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250356_2252969_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253021_2255322_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255318_2256527_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2256788_2257163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257159_2258110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258208_2260203_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260262_2261228_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261217_2264079_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264081_2264588_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264692_2265901_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265902_2266841_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2267002_2267476_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2267472_2268423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	2689115	2729785	4110595	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689115_2690066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690176_2690359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690458_2691055_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691238_2692330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692829_2693240_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2693298_2693640_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2693645_2696063_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696075_2697098_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697172_2697532_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697547_2697745_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698080_2699031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699225_2699675_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699671_2700622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700732_2702181_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2702295_2702577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702680_2703631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703875_2704589_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704711_2704939_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705233_2705872_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705980_2707015_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707011_2707962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708377_2708902_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708905_2709175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709373_2710435_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710518_2712153_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712154_2712958_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712986_2713946_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713949_2715464_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_050821245.1|2715500_2716763_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931018.1|2716937_2717408_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717443_2718055_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718085_2718709_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718789_2720322_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2720356_2721598_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721641_2722673_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722669_2723839_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2723832_2724513_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2724674_2725517_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725679_2726651_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726822_2727701_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727723_2728794_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728834_2729785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	2785250	2858120	4110595	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785250_2785667_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785777_2786410_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786438_2786882_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786903_2787995_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2788049_2788850_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788985_2789606_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2789745_2790219_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791358_2792309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069122.1|2792305_2799967_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800207_2804254_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804566_2805148_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805144_2806443_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_077069123.1|2806522_2807551_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807811_2808762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808758_2809709_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810025_2810631_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810684_2811998_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812072_2812543_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812542_2813331_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813341_2814994_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815081_2816032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817193_2817700_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817696_2818461_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818476_2818761_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818825_2819815_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819986_2820916_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820887_2821574_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821607_2822153_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822197_2823463_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823459_2824362_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825543_2826488_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826582_2828100_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828141_2829770_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829877_2830759_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833871_2834246_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834270_2834609_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834652_2836287_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836325_2837672_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837779_2839201_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839270_2839855_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839957_2840908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841042_2842149_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842159_2843257_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843401_2844607_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844613_2845135_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845131_2845623_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845619_2845871_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845851_2846337_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846472_2849934_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849951_2850836_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850845_2851277_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851523_2852027_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852104_2853505_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853579_2854455_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854451_2855459_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855926_2856232_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856322_2856913_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857103_2858120_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	2861263	2929123	4110595	protease,transposase	uncultured_Mediterranean_phage(28.57%)	51	NA	NA
WP_023995489.1|2861263_2862214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862312_2863263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863259_2864054_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864085_2864790_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864864_2865665_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865661_2866069_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866065_2866707_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866699_2868700_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869960_2871292_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871288_2872239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2872337_2873288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874994_2875261_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875968_2876307_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880860_2881463_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881559_2882849_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882906_2883638_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883634_2884438_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884434_2885523_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885519_2886449_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886597_2887743_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887764_2888715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2888732_2888891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889045_2892867_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893023_2893692_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893696_2895370_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895388_2896708_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896712_2899028_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899083_2901252_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2901248_2906438_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906527_2906842_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907069_2907315_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907409_2907928_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908027_2909233_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909348_2910746_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910862_2911441_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911513_2912905_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913072_2914023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914303_2914924_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914920_2915334_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915330_2916374_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916429_2916618_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916627_2917392_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917482_2918139_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918230_2918989_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919014_2920616_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920816_2921821_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921921_2922185_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922302_2923079_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923669_2924620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927003_2928116_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928172_2929123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	2959509	2998698	4110595	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2959509_2960460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960477_2960627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960580_2961477_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963754_2965980_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966144_2967233_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967189_2967843_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967890_2968688_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969219_2970170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2970244_2971399_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971455_2972406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972504_2972810_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972838_2973273_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973274_2974519_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974515_2975226_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975240_2976152_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976514_2976919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976915_2977374_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2977380_2978289_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2978285_2979152_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979138_2979966_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979976_2981104_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982181_2983420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983461_2984724_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984730_2985483_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985534_2985720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985995_2986460_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986491_2987151_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987295_2989404_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989400_2990351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990454_2991075_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2991166_2991919_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993053_2994178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994223_2994592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994833_2995784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996819_2997362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997559_2997730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997747_2998698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	3002249	3053546	4110595	transposase	Bacillus_virus(28.57%)	49	NA	NA
WP_005012067.1|3002249_3003200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3003392_3004175_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3004188_3004938_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3004965_3006312_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3006337_3007267_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3007382_3008288_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3008305_3009505_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3009577_3010270_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3010318_3012745_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010930742.1|3012789_3013740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853143.1|3013838_3014789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698394.1|3014806_3014953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809026.1|3015005_3015374_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3015660_3016587_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3016630_3017641_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3017637_3018072_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3019197_3019986_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3019995_3020778_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3020781_3021873_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3021978_3023454_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3023595_3024144_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_003809010.1|3024159_3024621_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3024721_3025711_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3026009_3026711_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3026749_3028123_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3028161_3029448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3030334_3031237_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3031184_3032405_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3032401_3032911_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3032900_3033596_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3033666_3034536_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930208.1|3034885_3035836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|3036696_3037386_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|3038162_3039125_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|3039128_3039989_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|3039982_3040375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486094.1|3043029_3043827_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|3043860_3044640_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486096.1|3044668_3045541_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003818698.1|3045562_3046312_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|3046319_3047177_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|3047217_3047781_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|3047811_3048108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|3048188_3048992_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818702.1|3049012_3050209_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247599.1|3050211_3051213_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|3051565_3051736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|3051830_3052493_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3052595_3053546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	3385244	3438985	4110595	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3385244_3386195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386599_3387244_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387268_3387853_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387953_3388571_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388573_3390289_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390285_3390594_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390610_3391228_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391272_3391575_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391675_3392530_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392717_3392942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393111_3393384_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393801_3394209_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394578_3395373_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395473_3396709_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396777_3397794_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397805_3399182_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399178_3400375_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400371_3401910_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401906_3403166_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405106_3406057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406823_3407918_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407910_3409245_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409198_3409882_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409907_3411071_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3411067_3412069_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3412068_3412941_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412937_3413687_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413683_3414475_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414471_3415611_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415886_3416672_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416705_3417488_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417491_3417881_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3419020_3419884_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3419919_3421008_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3421004_3421955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422308_3425287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426213_3427092_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3429040_3429991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429987_3430455_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430497_3431268_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3431288_3432089_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432099_3433509_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433603_3434389_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434628_3435645_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435752_3436145_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436282_3436963_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436967_3437939_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3438034_3438985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	3445140	3504440	4110595	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3445140_3446904_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3447015_3447894_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3448006_3448822_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448825_3449077_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449161_3450178_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450508_3450730_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453090_3454008_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454505_3455714_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455793_3457365_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457482_3458418_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458606_3459551_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460118_3465836_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465841_3466969_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3467024_3467651_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3467922_3468939_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3469034_3469745_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469741_3470731_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470826_3472458_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472460_3473198_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473353_3474226_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3474494_3475715_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475711_3476371_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476442_3477075_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477104_3477623_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477633_3478743_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478789_3479644_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479645_3480548_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481770_3482721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484477_3485467_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3485463_3485622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3485642_3486431_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486427_3487459_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487477_3488041_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488096_3489617_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489880_3490585_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3490592_3491330_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491435_3491810_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491852_3493142_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493138_3494308_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494304_3495144_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495203_3496139_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496151_3497102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497200_3498163_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498194_3498554_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498678_3499581_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499582_3501355_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501389_3502166_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503489_3504440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	3519378	3577451	4110595	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3519378_3520329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520457_3521591_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521634_3522540_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522542_3524243_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524239_3525160_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525167_3526145_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526203_3527238_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3529212_3529449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3529575_3530439_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530527_3531349_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531428_3532166_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3532162_3533155_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3533268_3533931_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533975_3535124_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3537447_3538398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538738_3539689_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539787_3540738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3541034_3541532_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541574_3543350_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543357_3544224_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544230_3544965_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546134_3546929_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547218_3547809_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547842_3549171_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549245_3550391_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550502_3551501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551463_3551898_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553414_3554299_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554295_3555501_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555497_3556358_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3556470_3558261_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3558301_3558967_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3558967_3559276_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559441_3560728_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3562161_3563112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565063_3566278_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566383_3567373_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567369_3567978_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567990_3568620_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568616_3569237_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569268_3570060_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570911_3571367_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3571385_3572312_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572365_3573652_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574582_3575455_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575451_3576402_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576500_3577451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011751	Bordetella pertussis strain J012 chromosome, complete genome	4110595	4032766	4086198	4110595	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_014486111.1|4032766_4033717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033886_4035113_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035312_4036179_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036171_4037134_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037234_4038185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038283_4039234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039332_4040283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040279_4041773_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041769_4044877_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044873_4047942_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047938_4049189_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4049369_4050131_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4050163_4050814_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4050816_4051656_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051896_4052640_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4052722_4053070_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053167_4054010_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054054_4054942_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054968_4055157_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055254_4056712_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056698_4058225_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058243_4058711_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4058710_4059733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4059853_4060573_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4060648_4061749_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061750_4062941_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063060_4064077_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064395_4065067_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065063_4065972_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066183_4066831_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4070682_4071759_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071769_4072579_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072668_4073442_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4073442_4073607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073624_4074575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4074463_4075486_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4075475_4076630_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4076669_4078082_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4078206_4079073_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4079074_4079899_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4079895_4080657_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4080737_4081424_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4081597_4082605_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4082601_4083381_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4083438_4084701_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4085247_4086198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
