The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	0	59497	4110591	tRNA,transposase	Natrialba_phage(12.5%)	52	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077068995.1|21943_22894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	70134	123122	4110591	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	165944	226455	4110591	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165944_166895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168338_169241_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169218_169848_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170130_171561_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171594_172224_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172272_173880_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173904_174588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174669_175146_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175352_176303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177418_177946_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178037_178853_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178913_179648_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179685_181764_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182013_182286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182387_183473_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183476_185381_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185377_189052_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189112_189676_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189683_190106_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190133_190553_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190581_191055_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191154_191652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191806_194077_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194125_195358_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195456_196407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196509_197145_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197141_198035_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198429_199530_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199611_199986_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200045_202910_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203054_203795_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203864_205076_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205104_206073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206686_207637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207793_208117_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208221_209262_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209267_210047_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210092_210389_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210414_210690_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210746_211391_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211390_212077_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212206_213058_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213108_213834_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213865_215215_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215326_216259_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216716_219512_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220105_223048_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223119_223839_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223877_224426_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224580_225480_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225504_226455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	234387	287975	4110591	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234387_235338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235424_236375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236371_237322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237420_238218_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239167_239578_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240599_241343_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241386_242430_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242600_244703_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246113_247070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247088_247580_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247576_248932_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248932_249631_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249627_250329_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250581_251631_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251736_252678_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252674_254564_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254650_255289_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255431_256817_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256747_257284_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257435_258827_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258843_259824_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259959_260943_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261007_261907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262013_263768_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263775_264900_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264913_265894_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266624_267575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268134_268680_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268763_270383_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270398_271553_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271566_271692_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271688_273440_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273436_275116_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275178_275727_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276869_277148_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278191_279142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279419_279581_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279588_279729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280247_280697_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280706_281318_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281476_282331_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282350_283733_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283797_284439_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284578_285037_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285061_285838_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285891_287028_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287024_287975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	391908	449417	4110591	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391908_392859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392995_393913_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393909_394158_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394154_395360_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395432_396428_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396450_397671_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397667_398312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400042_400852_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401156_402110_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402208_403192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403118_403820_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403868_404639_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404635_405814_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405981_407688_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407684_408581_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408621_410211_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410260_411253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411321_411921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412381_413362_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413437_414388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414476_415391_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415387_416047_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416136_417060_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417065_417521_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417517_418621_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418579_418849_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418808_420428_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420424_421483_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421612_422107_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422199_423177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423372_424578_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424574_426086_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426101_427415_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427605_427785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428194_428929_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431373_432324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432455_432854_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433264_433735_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433823_434168_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434267_435668_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437456_437975_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438085_438841_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439036_440269_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440261_441047_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441113_442085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442095_443073_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443198_444371_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444397_445426_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445491_446685_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448466_449417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	591471	652662	4110591	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591471_592422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592918_593788_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593784_594606_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594805_595297_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595315_596389_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596435_597539_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597614_598235_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598255_598765_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598819_599071_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599134_600268_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600275_600662_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600658_603178_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603606_603945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603941_604448_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604509_605310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605420_606362_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606455_607991_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609670_611521_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611524_612358_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612357_613299_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613550_614522_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614663_616952_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617258_618167_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618221_619187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619261_620923_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620994_621705_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621853_622804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623502_623886_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623943_624546_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624563_624965_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625098_625992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625988_626570_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627364_628099_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628139_629189_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629336_629915_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630301_631279_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631372_635767_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635967_636816_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636974_637787_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637842_638793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638891_639692_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639753_640137_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640148_641582_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641788_642118_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642120_642870_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643052_643973_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644019_644232_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644254_644677_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644693_645794_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645890_647408_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647483_648323_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648344_649226_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649307_650402_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650695_651646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651720_652662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	657986	704177	4110591	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657986_659012_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659052_659292_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659361_660951_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660950_661499_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661579_662152_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662170_663082_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663155_664124_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664246_665320_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665324_667145_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667221_668172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668260_668596_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668729_669380_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669401_670820_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670889_671645_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671613_672372_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672382_673264_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673280_673988_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673990_674749_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674958_676701_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676693_677218_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677257_678052_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678219_679293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679391_680342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680593_680800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680871_681483_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682037_682289_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682281_682971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683227_684178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684817_685303_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685289_686567_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686569_687988_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688016_689072_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689077_689320_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689442_690045_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690473_691424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692098_692350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692412_692895_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692896_693097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693096_693492_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693488_693887_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693883_694306_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694313_694814_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695068_695587_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695596_695926_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695943_696234_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696259_698872_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698881_699241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699308_699842_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699838_700228_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700220_704177_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	710343	764273	4110591	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710343_712074_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712126_712555_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712557_713238_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713237_713696_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713732_714707_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714723_716040_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716071_716569_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716655_717345_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717344_718394_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718390_719185_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719353_719704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719679_720237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721366_722317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724454_725684_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725686_727129_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727233_728379_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728410_729208_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729232_730792_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730788_733161_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733270_734374_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734373_735066_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735209_735911_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735895_736273_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737004_737955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738114_738987_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739327_739546_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739585_740965_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741006_742404_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742443_744096_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744099_744984_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744983_745925_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746003_747623_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747789_748605_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748672_749242_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749242_750193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750847_751945_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751978_753244_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753401_754352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754595_755186_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755201_757646_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757765_758737_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758868_759393_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759352_760303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760524_762720_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762792_763221_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763322_764273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	815866	887879	4110591	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_005013747.1|815866_816817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|816915_817572_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|817719_820428_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|820437_821457_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|821453_822404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|822502_822991_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|822987_823671_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|823700_827156_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|827191_828052_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|828180_829098_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|829235_830216_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|830275_832066_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|832062_832839_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|832848_833367_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|833479_835750_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|835961_838193_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|838493_838823_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|838839_840324_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|840334_841837_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|841833_843846_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|843863_844172_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|844168_844816_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|844833_845322_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|845343_846417_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|846416_848744_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|848759_850127_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|850123_850618_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|850663_851920_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|851922_852546_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|852620_853097_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|853133_853493_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|853681_854839_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|855151_856102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856119_856674_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856675_857110_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857106_857541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857524_858328_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858344_859160_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859156_859972_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860118_860820_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860847_862806_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862888_863839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864059_864728_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864851_865958_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865970_869084_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869080_870574_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870588_871260_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871303_871798_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871938_872586_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872689_874738_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874734_876747_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876772_878107_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878215_879208_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879274_881359_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881383_882355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882483_883515_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883518_884670_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884840_885764_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885841_886666_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886862_887879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	895513	958594	4110591	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|895513_897745_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898532_898979_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|899000_899747_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899890_900868_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901501_902113_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902106_903324_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903464_904415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904411_905131_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905251_907411_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907501_907771_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|908064_908592_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908610_909390_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909557_910574_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910646_911138_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911148_912864_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914027_914978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914974_916807_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917205_917865_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917958_918105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918213_918381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918392_919073_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919354_920071_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920085_921387_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923531_926420_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926643_927996_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928024_928546_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928542_929997_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930031_930280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930385_931261_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931286_932342_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932354_933146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933178_934549_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935725_936676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936728_936950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937109_937322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937441_938560_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939065_939317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939429_940380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940376_940760_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940814_942629_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942778_943606_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943651_944632_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944628_944841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944837_946019_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946182_946917_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946918_949531_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949666_951580_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952195_952606_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952703_953789_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953887_954838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954834_955809_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955933_956845_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957121_957514_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957643_958594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	978016	1040171	4110591	transposase	Streptococcus_phage(20.0%)	46	NA	NA
WP_005012067.1|978016_978967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979047_979959_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980019_981165_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981184_982099_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982170_982920_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982919_983849_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984092_985919_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|986001_986643_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|986865_987867_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989703_990768_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991565_992474_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993961_995236_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995389_995770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995777_996650_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996955_997336_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997546_998272_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|998367_999318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999422_1000472_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000609_1001626_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003134_1003707_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003766_1004498_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004549_1005467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006274_1009454_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009450_1010833_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010902_1011154_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011299_1011914_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012100_1014215_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014290_1015142_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015138_1015765_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015761_1017516_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017808_1020514_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020526_1022188_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022200_1023991_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024212_1025388_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025430_1026381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026479_1027430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027528_1028269_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028463_1030500_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030517_1031528_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031645_1032839_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032868_1033642_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033638_1034829_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034854_1035793_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035789_1038138_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038292_1038934_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1039037_1040171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	1048381	1099043	4110591	tRNA,holin,transposase	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1048381_1049332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049630_1050368_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050803_1051127_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051161_1051722_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051842_1052718_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052730_1053678_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053779_1054073_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054099_1056157_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056171_1056672_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056745_1058452_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059315_1060368_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060420_1060810_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060818_1061451_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061550_1062567_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1063355_1064405_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064401_1066045_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066041_1066929_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067069_1067543_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067532_1068555_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068551_1069979_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070916_1071933_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072265_1073201_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073250_1075131_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075197_1075542_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075686_1076823_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076819_1077893_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078050_1079487_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079577_1080219_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080554_1081571_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083511_1084462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085766_1087188_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087451_1088168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088252_1088570_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088610_1089024_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089025_1089385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089427_1090972_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091055_1091886_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091920_1093075_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093117_1093990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094106_1096395_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097601_1098066_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098092_1099043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	1110768	1184095	4110591	tRNA,protease,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930174.1|1110768_1112655_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112596_1112848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112892_1113525_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113543_1114146_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1114297_1115248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115828_1116536_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116894_1117881_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118020_1119034_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119030_1119981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1120093_1120552_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120588_1121902_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121919_1122291_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122287_1123751_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123891_1124620_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124601_1127451_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127663_1128614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128781_1129606_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129605_1130484_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131388_1132504_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132532_1133327_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133323_1135189_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135267_1135900_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135896_1136199_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136241_1137762_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137768_1138524_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138553_1139658_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139760_1141461_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1141442_1142420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1142429_1143710_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143702_1144398_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1144431_1145259_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145540_1148771_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1149506_1153433_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1156265_1157129_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1157128_1158097_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158166_1159012_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159079_1159634_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159680_1160631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1160729_1161353_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1161528_1163811_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163965_1166662_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166787_1167276_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169686_1172557_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172602_1173817_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174046_1175474_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1175571_1176663_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176675_1177434_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177521_1178424_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178420_1179371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1179500_1180484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1180538_1181261_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1182739_1184095_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 14
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	1319005	1387492	4110591	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319005_1319956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320724_1321363_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322252_1322699_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322780_1323482_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323482_1324250_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324246_1325485_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325484_1326411_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326513_1327629_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327644_1328595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328948_1329530_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329526_1330360_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330570_1331884_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332060_1332942_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332961_1333813_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333865_1334954_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335064_1336192_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336426_1337038_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337136_1338087_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338308_1338686_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338833_1339331_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339327_1339855_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339988_1340804_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340816_1341998_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342045_1342939_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343065_1343536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343661_1344489_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344517_1345294_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345290_1345566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345580_1346045_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346056_1346758_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346867_1347368_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347450_1348629_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350256_1350592_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350779_1352228_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352285_1352630_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352736_1353276_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353368_1354319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1354417_1354825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355057_1355489_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1355670_1356075_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357311_1357635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357637_1358525_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358557_1358983_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359054_1359408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359647_1360154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360192_1361524_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361583_1362399_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362395_1363250_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366312_1368856_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370222_1371977_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371973_1374094_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374098_1376294_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376290_1379632_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382434_1383385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383450_1383630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383746_1384502_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384488_1385634_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386541_1387492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	1447983	1503471	4110591	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447983_1448934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450135_1450582_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450574_1452050_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452046_1452802_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452794_1453805_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453794_1455471_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455783_1456116_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456129_1456525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456534_1456861_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1456857_1457184_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457110_1458133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458129_1458480_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458527_1458956_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458963_1460337_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460477_1460855_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461117_1462425_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462485_1463316_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463312_1463801_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463842_1465363_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465406_1465883_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466686_1469284_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469313_1470135_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470861_1471611_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471794_1472673_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472770_1473487_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473501_1474062_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474228_1474993_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475012_1475870_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475866_1477066_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477105_1478440_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478492_1480829_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480954_1481518_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481526_1482618_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482689_1483145_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483145_1483940_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483936_1485118_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485104_1485710_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485706_1486480_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486491_1487319_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487480_1489844_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489911_1490631_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490754_1491180_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1491214_1492165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492282_1493209_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493274_1494432_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494412_1494880_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495027_1495978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495994_1496429_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496418_1496769_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496965_1498120_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1498116_1499289_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499336_1500230_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500275_1500713_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500772_1501462_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501471_1502422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502520_1503471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	1598167	1658079	4110591	tRNA,transposase	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1598167_1598656_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598773_1599352_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599457_1599826_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599924_1600875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600881_1601994_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602680_1603883_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603918_1604065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1604086_1606747_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1606759_1610164_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610831_1613057_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613103_1613430_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613480_1614089_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614187_1615138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615236_1616187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616256_1617021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1617017_1617617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617720_1618572_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618631_1619258_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619254_1620205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620303_1621416_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621405_1622407_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622512_1624024_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624020_1625325_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625436_1625997_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626264_1626819_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627274_1627490_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627744_1630342_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630338_1631526_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1632184_1632799_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1632887_1634015_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634026_1634932_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635824_1636775_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636956_1637709_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637777_1638437_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638433_1639162_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639174_1641454_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641478_1641682_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641723_1642356_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642491_1643409_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643405_1644119_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644356_1645127_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645131_1645731_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645975_1647466_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647524_1647809_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1647946_1648102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1648374_1649301_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649437_1650178_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650344_1651721_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651902_1652808_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654459_1656262_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1656388_1657030_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657128_1658079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	1703251	1758842	4110591	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703251_1704202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704260_1705034_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705026_1706583_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010931070.1|1706579_1707530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708856_1709459_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709698_1710400_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710393_1711176_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711360_1712311_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712409_1713147_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713336_1714095_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714141_1715131_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715308_1716277_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717816_1718785_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718793_1719735_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720208_1721219_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721209_1722724_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722720_1724067_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1724069_1725104_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725153_1726779_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727331_1728282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728386_1729334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729387_1731202_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731194_1731869_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731998_1735073_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735086_1735386_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735700_1736324_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1736567_1737437_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737414_1738359_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738444_1739371_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739483_1740263_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740253_1741450_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741480_1742431_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742652_1743342_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743406_1744162_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744213_1745206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745215_1746169_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746284_1747247_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748648_1749077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749073_1750024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1750317_1751055_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751478_1752666_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1752669_1753050_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754769_1755741_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755754_1756468_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756472_1757390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757496_1757793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757891_1758842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	1991606	2061258	4110591	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991606_1994264_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994341_1995544_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995540_1996053_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996175_1996613_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996889_1997840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997938_1998889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1999142_2000948_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2001061_2001229_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001292_2001529_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2001897_2003097_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2004612_2005563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006014_2007016_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007188_2008046_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008042_2009305_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009405_2009780_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2009852_2011040_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011124_2011895_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012008_2012773_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012723_2014025_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2014021_2014828_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2016572_2017544_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017700_2018213_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018371_2019346_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020346_2021141_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021166_2021973_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022083_2022674_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022684_2023863_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023965_2024340_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024592_2025924_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025990_2029221_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030711_2031458_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031542_2032004_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032041_2033100_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033062_2034892_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034931_2035504_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036928_2037750_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038068_2039391_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039750_2040386_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040345_2041296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042166_2043039_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043116_2044256_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044614_2045871_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045876_2046404_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046408_2047227_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047226_2047949_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047970_2048285_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048302_2049451_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049481_2050357_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050353_2051673_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051745_2052942_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052952_2054440_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057034_2057934_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058071_2059037_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059135_2060086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060307_2061258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2072754	2122150	4110591	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072754_2073705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074842_2075139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075313_2076666_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076808_2077825_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079804_2080818_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2080904_2081810_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081966_2082311_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082468_2082927_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082940_2085157_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085153_2086215_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086243_2087218_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087169_2087988_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2088000_2088609_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2088783_2089179_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089197_2090637_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090665_2091013_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091031_2091982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092634_2093585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093668_2095486_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095559_2096207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096219_2097149_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097318_2097783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098030_2098711_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098759_2100451_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100466_2101018_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101014_2101386_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101498_2102335_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102345_2102870_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102967_2103147_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103276_2104251_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104381_2104738_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104727_2105603_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105701_2106586_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106607_2107903_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108851_2109502_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2109589_2111110_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111367_2113233_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114278_2115229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115246_2115387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116201_2116561_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116548_2117985_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117981_2118635_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118631_2119825_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119928_2121203_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121199_2122150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2133354	2174045	4110591	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133354_2134305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134403_2135354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135313_2135727_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136011_2136311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136720_2139003_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139468_2139663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2139688_2141719_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141738_2141951_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142228_2142768_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142881_2144177_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144253_2145411_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145594_2146494_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146512_2147817_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147782_2148889_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148976_2149213_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149351_2150422_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150425_2151781_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2151807_2152968_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152970_2153609_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2153610_2154897_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2154955_2156251_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156257_2156764_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156760_2157909_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157936_2158362_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158684_2161567_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161659_2162415_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163180_2164530_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164628_2165579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165677_2166628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166701_2167175_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167200_2168409_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168405_2169179_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169178_2169802_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169967_2170228_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170531_2171113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171179_2171434_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171420_2174045_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 21
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2201828	2267377	4110591	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201828_2202779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202979_2203789_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2203913_2204864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204860_2205754_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205878_2206073_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206072_2206414_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206423_2208286_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208415_2208928_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208930_2209254_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209255_2209666_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209703_2210915_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210932_2211445_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211660_2212152_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212404_2214441_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214518_2215721_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215849_2216500_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218057_2219008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219578_2219791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219808_2220540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220574_2221216_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221208_2221877_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224089_2224866_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224887_2226045_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226041_2226473_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2226469_2227273_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227286_2227688_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227754_2228726_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228791_2230015_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230242_2231193_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231316_2233770_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233958_2235263_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235367_2236021_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236023_2237334_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2237530_2238091_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238202_2238403_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238748_2239315_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239398_2239602_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239908_2240229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240270_2240552_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240626_2241883_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242265_2242595_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244165_2244987_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244986_2246126_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246132_2247029_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2247025_2248951_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249310_2251923_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251975_2254276_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254272_2255481_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2255742_2256117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256113_2257064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257162_2259157_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259216_2260182_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260171_2263033_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263035_2263542_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263646_2264855_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264856_2265795_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265956_2266430_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266426_2267377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2353554	2417132	4110591	protease,transposase	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2353554_2354505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2354806_2355283_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2355906_2357544_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2357574_2358888_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2359021_2359339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2359439_2360762_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2360758_2361709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2361807_2362758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2363287_2364310_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2364338_2365169_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2365185_2366883_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2366947_2368024_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2368183_2369047_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2369077_2369647_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2369663_2370515_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2371572_2372454_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2372528_2373518_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2373580_2374531_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2374593_2375451_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2375510_2375999_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2377571_2378762_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2378758_2380345_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2380363_2381431_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2381535_2383080_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2383499_2385074_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2385181_2386198_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2386194_2387034_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2387038_2388676_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2388672_2389623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2389765_2391040_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2391069_2391360_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2391432_2392446_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2392465_2393728_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2393730_2394654_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2394650_2396144_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2396154_2397087_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2397268_2398594_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2398628_2399972_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2400044_2401565_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2401719_2402451_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2402518_2403859_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2403874_2404786_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2404776_2405370_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2405431_2405818_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2405829_2406300_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2406311_2406935_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2406955_2409703_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2416181_2417132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2545225	2609441	4110591	tRNA,protease,transposase	Salmonella_phage(16.67%)	60	NA	NA
WP_004566381.1|2545225_2546713_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2546750_2547809_-	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_023853242.1|2547808_2548309_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2548321_2548921_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2548917_2549418_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2549419_2550649_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2550838_2551078_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2551260_2552013_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2552014_2552950_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2553031_2554018_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2554017_2555076_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2555132_2555315_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2555366_2555960_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2556068_2556668_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2556664_2557375_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2557376_2558204_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2560020_2561262_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561273_2562047_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562073_2563024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563122_2563905_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563993_2565220_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2565945_2567331_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567349_2567955_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567951_2569808_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569804_2570605_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570619_2571813_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571880_2572855_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572977_2574201_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574311_2576516_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576810_2577470_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577477_2577684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578022_2578778_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2578793_2578955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2579048_2579564_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579836_2580154_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2580098_2580743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580868_2582224_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582270_2583611_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583712_2584345_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2584344_2586705_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586746_2587706_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587692_2588379_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2588375_2588708_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588823_2589774_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589872_2590823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2590819_2592886_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2592885_2593158_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2593852_2593942_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2593941_2595726_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2595749_2597915_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2597925_2598525_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2601346_2602042_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2602050_2603001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015028.1|2603099_2604341_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_003814057.1|2604490_2605471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814059.1|2605669_2606926_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814061.1|2607128_2607554_+	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814063.1|2607595_2607958_-	cytochrome c	NA	NA	NA	NA	NA
WP_003814065.1|2607970_2608324_-	cytochrome c	NA	NA	NA	NA	NA
WP_005013747.1|2608490_2609441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2689118	2729787	4110591	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689118_2690069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690179_2690362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690461_2691058_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691241_2692333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692832_2693243_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2693301_2693643_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2693648_2696066_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696078_2697101_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697175_2697535_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697550_2697748_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698083_2699034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699228_2699678_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699674_2700625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700735_2702184_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2702298_2702580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702683_2703634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703878_2704592_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704714_2704942_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705236_2705875_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705983_2707018_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707014_2707965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708380_2708905_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708908_2709178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709376_2710438_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710521_2712156_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712157_2712961_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712989_2713949_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713952_2715467_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715503_2716508_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716939_2717410_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717445_2718057_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718087_2718711_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718791_2720324_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2720358_2721600_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721643_2722675_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722671_2723841_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2723834_2724515_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2724676_2725519_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725681_2726653_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726824_2727703_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727725_2728796_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728836_2729787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2733898	2816033	4110591	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2733898_2734849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2735598_2736033_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2736025_2737261_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2737268_2738063_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2738059_2738863_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2738889_2739867_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2739895_2741467_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2741477_2742299_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2744023_2745454_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2745466_2746156_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2746251_2747592_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2747593_2747851_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2748204_2749797_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2749893_2751354_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2751576_2752188_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2755934_2756885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2757300_2759937_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2759933_2761058_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2761054_2762437_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2762572_2763040_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2763958_2765104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2765105_2766836_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2766953_2767262_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2767274_2768087_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2768967_2770056_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2771258_2772047_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2772086_2773691_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2773771_2774512_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2774519_2775014_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2775386_2776406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2776402_2777785_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2777817_2778678_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2779681_2780563_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2780621_2781059_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2781149_2782121_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2782159_2783104_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2783199_2784009_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2784085_2784460_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2784566_2785259_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2785251_2785668_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785778_2786411_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786439_2786883_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786904_2787996_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2788050_2788851_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788986_2789607_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2789746_2790220_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791359_2792310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792306_2799968_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800208_2804255_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804567_2805149_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805145_2806444_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806523_2807552_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807812_2808763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808759_2809710_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810026_2810632_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810685_2811999_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812073_2812544_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812543_2813332_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813342_2814995_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815082_2816033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2839958	2887666	4110591	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2839958_2840909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841043_2842150_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842160_2843258_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843402_2844608_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844614_2845136_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845132_2845624_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845620_2845872_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845852_2846338_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846473_2849935_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849952_2850837_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850846_2851278_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851524_2852028_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852105_2853506_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853580_2854456_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854452_2855460_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855927_2856233_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856323_2856914_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857104_2858121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858312_2860649_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860731_2861166_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861264_2862215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862313_2863264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863260_2864055_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864086_2864791_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864865_2865666_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865662_2866070_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866066_2866708_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866700_2868701_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869961_2871293_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871289_2872240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873946_2874213_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874920_2875259_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879811_2880414_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880510_2881800_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881857_2882589_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882585_2883389_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883385_2884474_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884470_2885400_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885548_2886694_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886715_2887666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2895663	2959411	4110591	protease,transposase	uncultured_Mediterranean_phage(22.22%)	55	NA	NA
WP_010931114.1|2895663_2897979_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898034_2900203_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900199_2905389_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905478_2905793_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906020_2906266_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906360_2906879_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906978_2908184_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908299_2909697_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909813_2910392_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910464_2911856_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912023_2912974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913254_2913875_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913871_2914285_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914281_2915325_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915380_2915569_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915578_2916343_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916433_2917090_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917181_2917940_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917965_2919567_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919767_2920772_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920872_2921136_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921253_2922030_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922620_2923571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925954_2927067_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927123_2928074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2928282_2928504_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2928717_2930124_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2930120_2931425_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2931421_2932609_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2932825_2933278_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2933280_2933745_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2933824_2935504_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2935608_2936586_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2936665_2937634_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2937654_2939028_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2939024_2939861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2939977_2940433_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2940448_2940721_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2940813_2941137_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2941184_2941565_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2941784_2942582_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2942738_2944601_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2944650_2945562_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2945566_2945833_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2945919_2946789_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2946924_2947890_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2948060_2949071_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2949218_2950370_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2951512_2952985_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2952995_2953406_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2953469_2954516_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2954622_2955501_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2955514_2956711_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2956787_2958464_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2958460_2959411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	2968170	3027350	4110591	transposase	Bacillus_virus(28.57%)	57	NA	NA
WP_010930176.1|2968170_2969121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969195_2970350_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970406_2971357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971455_2971761_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971789_2972224_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972225_2973470_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973466_2974177_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974191_2975103_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975465_2975870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975866_2976325_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976331_2977240_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977236_2978103_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978089_2978917_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978927_2980055_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981132_2982371_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982412_2983675_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983681_2984434_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984485_2984671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984946_2985411_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985442_2986102_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986246_2988355_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988351_2989302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989405_2990026_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990117_2990870_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992004_2993129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993174_2993543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993784_2994735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995770_2996313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996510_2996681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996698_2997649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997645_2998611_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998680_2999517_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000029_3001139_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001200_3002151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3002343_3003126_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3003139_3003889_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3003916_3005263_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3005288_3006218_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3006333_3007239_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3007256_3008456_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3008528_3009221_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3009269_3011696_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3011740_3012691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3012907_3013276_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3013562_3014489_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3014532_3015543_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3015539_3015974_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3017099_3017888_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3017897_3018680_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3018683_3019775_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3019880_3021356_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3021497_3022046_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_003809010.1|3022061_3022523_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3022623_3023613_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3023911_3024613_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3024651_3026025_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3026063_3027350_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	3383142	3503387	4110591	tRNA,transposase	Acinetobacter_phage(20.0%)	100	NA	NA
WP_023995489.1|3383142_3384093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384497_3385142_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385166_3385751_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385851_3386469_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386471_3388187_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388183_3388492_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388508_3389126_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389170_3389473_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389573_3390428_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390615_3390840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391009_3391282_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391699_3392107_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392476_3393271_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393371_3394607_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394675_3395692_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395703_3397080_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397076_3398273_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398269_3399808_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399804_3401064_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403004_3403955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404721_3405816_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405808_3407143_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407096_3407780_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407805_3408969_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3408965_3409967_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409966_3410839_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410835_3411585_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411581_3412373_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412369_3413509_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413784_3414570_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414603_3415386_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415389_3415779_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3416918_3417782_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3417817_3418906_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418902_3419853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420206_3423185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424111_3424990_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3425954_3426905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3427987_3428938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428934_3429402_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429444_3430215_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3430235_3431036_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431046_3432456_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432550_3433336_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433575_3434592_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434699_3435092_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435229_3435910_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435914_3436886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436981_3437932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439436_3440138_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3440137_3441562_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3442631_3443972_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3444087_3445851_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445962_3446841_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446953_3447769_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447772_3448024_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448108_3449125_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449455_3449677_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452037_3452955_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453452_3454661_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454740_3456312_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456429_3457365_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457553_3458498_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459065_3464783_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464788_3465916_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465971_3466598_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3466869_3467886_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467981_3468692_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468688_3469678_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469773_3471405_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471407_3472145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472300_3473173_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3473441_3474662_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474658_3475318_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475389_3476022_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476051_3476570_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476580_3477690_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477736_3478591_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478592_3479495_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480717_3481668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483424_3484414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3484410_3484569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3484589_3485378_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485374_3486406_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486424_3486988_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487043_3488564_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488827_3489532_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3489539_3490277_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490382_3490757_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490799_3492089_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492085_3493255_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493251_3494091_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494150_3495086_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495098_3496049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496147_3497110_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497141_3497501_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497625_3498528_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498529_3500302_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500336_3501113_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502436_3503387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	3518325	3576398	4110591	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518325_3519276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519404_3520538_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520581_3521487_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521489_3523190_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523186_3524107_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524114_3525092_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525150_3526185_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3528159_3528396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528522_3529386_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529474_3530296_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530375_3531113_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3531109_3532102_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3532215_3532878_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532922_3534071_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3536394_3537345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537685_3538636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538734_3539685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539981_3540479_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540521_3542297_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542304_3543171_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543177_3543912_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545081_3545876_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546165_3546756_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546789_3548118_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548192_3549338_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549449_3550448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550410_3550845_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552361_3553246_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553242_3554448_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554444_3555305_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3555417_3557208_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3557248_3557914_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3557914_3558223_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558388_3559675_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3561108_3562059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564010_3565225_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565330_3566320_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566316_3566925_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566937_3567567_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567563_3568184_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568215_3569007_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569858_3570314_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3570332_3571259_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571312_3572599_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573529_3574402_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574398_3575349_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575447_3576398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011750	Bordetella pertussis strain I978 chromosome, complete genome	4110591	4032762	4086194	4110591	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4032762_4033713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033882_4035109_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035308_4036175_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036167_4037130_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037230_4038181_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038279_4039230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039328_4040279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040275_4041769_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041765_4044873_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044869_4047938_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047934_4049185_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4049365_4050127_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4050159_4050810_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4050812_4051652_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051892_4052636_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4052718_4053066_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053163_4054006_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054050_4054938_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054964_4055153_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055250_4056708_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056694_4058221_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058239_4058707_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4058706_4059729_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4059849_4060569_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4060644_4061745_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061746_4062937_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063056_4064073_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064391_4065063_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065059_4065968_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066179_4066827_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4070678_4071755_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071765_4072575_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072664_4073438_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4073620_4074571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4074459_4075482_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4075471_4076626_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4076665_4078078_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4078202_4079069_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4079070_4079895_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4079891_4080653_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4080733_4081420_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4081593_4082601_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4082597_4083377_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4083434_4084697_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4085243_4086194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
