The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	0	59497	4111640	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077068995.1|21943_22894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|28331_29282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	70134	123122	4111640	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	165942	226453	4111640	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190579_191053_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220103_223046_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	234385	287973	4111640	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279157_279304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	391906	449415	4111640	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	591469	705223	4111640	terminase,transposase,protease,tRNA,tail	uncultured_Caudovirales_phage(14.81%)	113	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592916_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594802_595294_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595312_596386_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596432_597536_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597611_598232_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598252_598762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598816_599068_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599131_600265_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600272_600659_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600655_603175_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603603_603942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603938_604445_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604506_605307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605417_606359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606452_607988_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609667_611518_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611521_612355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612354_613296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613547_614519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614660_616949_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617255_618164_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618218_619184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619258_620920_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620991_621702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621668_621833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621850_622801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623499_623883_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623940_624543_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624560_624962_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625095_625989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625985_626567_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627361_628096_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628136_629186_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629333_629912_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630298_631276_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631369_635764_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635964_636813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636971_637784_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637839_638790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638888_639689_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639750_640134_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640145_641579_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641785_642115_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642117_642867_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643049_643970_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644016_644229_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644251_644674_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644690_645791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645887_647405_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647480_648320_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648341_649223_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649304_650399_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|652757_653708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|653791_654151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|654532_655570_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|655886_657227_+	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931463.1|657236_657689_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|657785_658967_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|659032_660058_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|660098_660338_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|660407_661997_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|661996_662545_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|662625_663198_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|663216_664128_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|664201_665170_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|665292_666366_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|666370_668191_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|668267_669218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|669306_669642_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|669775_670426_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|670447_671866_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|671935_672691_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|672659_673418_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|673428_674310_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|674326_675034_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|675036_675795_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|676004_677747_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|677739_678264_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|678303_679098_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|679265_680339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|680437_681388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|681639_681846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|681917_682529_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|683083_683335_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|683327_684017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|684034_684256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|684273_685224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|685863_686349_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|686335_687613_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|687615_689034_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|689062_690118_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|690123_690366_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|690488_691091_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|691519_692470_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|693144_693396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|693458_693941_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|693942_694143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|694142_694538_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|694534_694933_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|694929_695352_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|695359_695860_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|696114_696633_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696642_696972_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|696989_697280_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697305_699918_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699927_700287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|700354_700888_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700884_701274_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701266_705223_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	711389	765319	4111640	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|711389_713120_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713172_713601_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713603_714284_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714283_714742_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714778_715753_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715769_717086_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717117_717615_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717701_718391_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718390_719440_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719436_720231_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720399_720750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720725_721283_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|722412_723363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|725500_726730_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726732_728175_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728279_729425_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729456_730254_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730278_731838_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731834_734207_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|734316_735420_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735419_736112_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736255_736957_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736941_737319_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_010929591.1|738050_739001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739160_740033_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740373_740592_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740631_742011_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742052_743450_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743489_745142_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745145_746030_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746029_746971_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747049_748669_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748835_749651_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749718_750288_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750288_751239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751893_752991_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753024_754290_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|754447_755398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755641_756232_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756247_758692_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758811_759783_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759914_760439_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760398_761349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761570_763766_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|763838_764267_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|764368_765319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	856197	905461	4111640	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|856197_857148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|857165_857720_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|857721_858156_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|858152_858587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|858570_859374_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|859390_860206_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|860202_861018_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|861164_861866_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861893_863852_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863934_864885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|865105_865774_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|865897_867004_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|867016_870130_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|870126_871620_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|871634_872306_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|872349_872844_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|872984_873632_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|873735_875784_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|875780_877793_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|877818_879153_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|879261_880254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|880320_882405_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|882429_883401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|883529_884561_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|884564_885716_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|885886_886810_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|886887_887712_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|887908_888925_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889121_890105_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891703_893092_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893122_894112_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894222_895455_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895736_896537_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896559_898791_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|899578_900025_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900046_900793_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900936_901914_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902547_903159_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903152_904370_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904510_905461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	915073	980013	4111640	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|915073_916024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916020_917853_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918251_918911_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|919004_919151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|919259_919427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|919438_920119_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920400_921117_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921131_922433_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|924577_927466_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927689_929042_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929070_929592_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929588_931043_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931077_931326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931431_932307_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932332_933388_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933400_934192_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934224_935595_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936771_937722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937774_937996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938155_938368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938487_939606_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|940111_940363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940475_941426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941422_941806_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941860_943675_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943824_944652_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944697_945678_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945674_945887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945883_947065_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947228_947963_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947964_950577_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950712_952626_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953241_953652_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953749_954835_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954933_955884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|955880_956855_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|956979_957891_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958167_958560_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|958689_959640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|959669_959852_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|960624_961806_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|962021_962699_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|962695_963421_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|963546_964128_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|964498_967180_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|967179_968313_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|968305_969391_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|969477_970377_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|970373_971702_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|971716_972388_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|972575_974291_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|974292_974652_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|974843_975158_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|975200_976421_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|976417_977359_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|977355_978345_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|978379_978964_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|979062_980013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	999413	1050378	4111640	transposase	Enterococcus_phage(25.0%)	42	NA	NA
WP_010929591.1|999413_1000364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000468_1001518_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1001655_1002672_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004180_1004753_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004812_1005544_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005595_1006513_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007320_1010500_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010496_1011879_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011948_1012200_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012345_1012960_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1013146_1015261_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015336_1016188_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016184_1016811_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016807_1018562_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018854_1021560_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021572_1023234_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023246_1025037_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025258_1026434_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1026476_1027427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1027525_1028476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1028574_1029315_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1029509_1031546_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1031563_1032574_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1032691_1033885_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1033914_1034688_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1034684_1035875_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1035900_1036839_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1036835_1039184_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1039338_1039980_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1040083_1041217_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1041309_1041462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1041493_1042042_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1042060_1042546_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1042723_1043662_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1043664_1043982_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1044027_1044972_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1046652_1047303_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1047356_1047692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1047688_1048549_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1048565_1048847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1048920_1049184_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1049427_1050378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	1062596	1121027	4111640	holin,protease,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1062596_1063613_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1064401_1065451_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1065447_1067091_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1067087_1067975_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1068115_1068589_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1068578_1069601_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1069597_1071025_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1071962_1072979_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1073311_1074247_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1074296_1076177_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1076243_1076588_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1076732_1077869_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077865_1078939_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1079096_1080533_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080623_1081265_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1081600_1082617_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1084557_1085508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1086812_1088234_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1088497_1089214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1089298_1089616_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1089656_1090070_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1090071_1090431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1090473_1092018_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1092101_1092932_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1092966_1094121_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1094163_1095036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1095152_1097441_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1098647_1099112_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1099138_1100089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1100106_1100244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1100456_1101233_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1101277_1102135_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1102156_1103173_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1103307_1104348_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1104542_1106624_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1106859_1108353_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1108583_1109378_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1109598_1110957_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1110953_1111796_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1111814_1113701_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1113642_1113894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1113938_1114571_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1114589_1115192_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1115343_1116294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1116874_1117582_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1117940_1118927_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1119066_1120080_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1120076_1121027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	1320050	1388537	4111640	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1320050_1321001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321769_1322408_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1323297_1323744_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1323825_1324527_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1324527_1325295_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1325291_1326530_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1326529_1327456_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1327558_1328674_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1328689_1329640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329993_1330575_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1330571_1331405_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1331615_1332929_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1333105_1333987_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1334006_1334858_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334910_1335999_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1336109_1337237_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1337471_1338083_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1338181_1339132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1339353_1339731_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339878_1340376_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1340372_1340900_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1341033_1341849_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1341861_1343043_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1343090_1343984_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1344110_1344581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1344706_1345534_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1345562_1346339_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1346335_1346611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1346625_1347090_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1347101_1347803_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1347912_1348413_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1348495_1349674_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1351301_1351637_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351824_1353273_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1353330_1353675_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353781_1354321_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1354413_1355364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1355381_1355621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356102_1356534_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1356715_1357120_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358356_1358680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358682_1359570_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359602_1360028_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360099_1360453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360692_1361199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361237_1362569_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362628_1363444_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363440_1364295_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367357_1369901_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371267_1373022_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373018_1375139_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375143_1377339_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377335_1380677_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383479_1384430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1384495_1384675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1384791_1385547_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1385533_1386679_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1387586_1388537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	1449028	1504516	4111640	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449028_1449979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451180_1451627_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451619_1453095_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453091_1453847_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453839_1454850_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454839_1456516_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456828_1457161_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457174_1457570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457579_1457906_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1457902_1458229_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458155_1459178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459174_1459525_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459572_1460001_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460008_1461382_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461522_1461900_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462162_1463470_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463530_1464361_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464357_1464846_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464887_1466408_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466451_1466928_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467731_1470329_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470358_1471180_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471906_1472656_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472839_1473718_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473815_1474532_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474546_1475107_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475273_1476038_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476057_1476915_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476911_1478111_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478150_1479485_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479537_1481874_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481999_1482563_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482571_1483663_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483734_1484190_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484190_1484985_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484981_1486163_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486149_1486755_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486751_1487525_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487536_1488364_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488525_1490889_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490956_1491676_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491799_1492225_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1492259_1493210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493327_1494254_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494319_1495477_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495457_1495925_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1496072_1497023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497039_1497474_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497463_1497814_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498010_1499165_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1499161_1500334_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500381_1501275_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501320_1501758_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501817_1502507_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502516_1503467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1503565_1504516_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	1695444	1759022	4111640	transposase,protease	Klebsiella_phage(11.11%)	49	NA	NA
WP_005012808.1|1695444_1696395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930866.1|1702873_1705621_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1705641_1706265_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1706276_1706747_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1706758_1707145_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1707206_1707800_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1707790_1708702_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930862.1|1708717_1710058_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1710125_1710857_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|1711011_1712532_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_023853659.1|1712604_1713948_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1713982_1715308_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1715489_1716422_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1716432_1717926_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1717922_1718846_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1718848_1720111_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1720130_1721144_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1721216_1721507_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1721536_1722811_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_162268683.1|1722792_1722936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1722953_1723904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1723900_1725538_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1725542_1726382_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930849.1|1726378_1727395_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1727502_1729077_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1729496_1731041_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1731145_1732213_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1732231_1733818_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1733814_1735005_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1736577_1737066_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1737125_1737983_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1738045_1738996_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1739058_1740048_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1740122_1741004_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1742061_1742913_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1742929_1743499_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930839.1|1743529_1744393_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1744552_1745629_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1745693_1747391_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1747407_1748238_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1748266_1749289_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1749818_1750769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1750867_1751818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1751814_1753137_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1753237_1753555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1753688_1755002_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1755032_1756670_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1757293_1757770_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1758071_1759022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	1798135	1846150	4111640	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1798135_1799086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1799184_1801785_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1801891_1802896_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1803004_1804345_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1804385_1805414_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1805609_1806155_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1806151_1806712_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1806810_1807761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1807798_1808386_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1808403_1808787_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1810146_1811439_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1811573_1812614_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1812711_1813728_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1813995_1814643_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1814768_1815527_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1815511_1816291_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1816308_1817193_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1817189_1817969_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1818073_1818673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1818961_1819714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1819832_1821233_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1821256_1821655_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1821830_1822031_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1822169_1822898_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1823031_1824447_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1824450_1825314_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1825326_1826076_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1826258_1828274_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1828255_1828924_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1829698_1830649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1830747_1831698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1831846_1832185_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1832242_1832404_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1832435_1832636_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1832901_1835475_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1835545_1838095_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1840645_1841134_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1841225_1842377_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1842430_1843252_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1843290_1844520_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1844648_1845089_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1845199_1846150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	1907712	1966982	4111640	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1907712_1908663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1908787_1909597_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1909797_1910748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1912021_1913239_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1914295_1915198_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1915274_1916147_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1916277_1916646_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1916703_1917750_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1917945_1919202_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1919206_1920544_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1920693_1921650_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1921752_1922685_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1922800_1923121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1923113_1923473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1923520_1925095_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1925147_1926092_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1926109_1926940_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1926932_1928567_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1928563_1929919_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1930825_1932403_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1932406_1933681_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1933778_1934153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1935868_1937002_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1937039_1937645_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1937641_1938460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1938531_1941156_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1941142_1941397_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1941463_1942045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1942348_1942609_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1942774_1943398_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1943397_1944171_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1944167_1945376_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1945401_1945875_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1945948_1946899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1946997_1947948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1948046_1949396_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1950161_1950917_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1951009_1953892_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1954214_1954640_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1954667_1955816_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1955812_1956319_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1956325_1957621_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1957679_1958966_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1958967_1959606_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1959608_1960769_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1960795_1962151_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1962154_1963225_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1963363_1963600_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1963687_1964794_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1964759_1966064_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1966082_1966982_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	1977222	2034719	4111640	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_005013747.1|1977222_1978173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1978271_1979222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1979421_1980507_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1980522_1981284_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1981280_1982240_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1982302_1982803_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1982835_1983579_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1983674_1983914_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1983927_1984080_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1984165_1985656_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1985747_1986686_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1986682_1986859_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1986861_1987524_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1989145_1989289_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1989285_1990260_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1990154_1990409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1990426_1991377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1991373_1992648_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1992751_1993945_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1993941_1994595_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1994591_1996028_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1996015_1996375_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1997189_1997330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1998294_2000160_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2000417_2001938_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2002025_2002676_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2003624_2004920_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2004941_2005826_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2005924_2006800_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2006789_2007146_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2007276_2008251_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2008380_2008560_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2008657_2009182_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2009192_2010029_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2010141_2010513_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2010509_2011061_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2011076_2012768_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2012816_2013497_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2013744_2014209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2014378_2015308_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2015320_2015968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2016041_2017859_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2017942_2018893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2019545_2020496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2020514_2020862_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2020890_2022330_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2022348_2022744_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2022918_2023527_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2023539_2024358_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2024309_2025284_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2025312_2026374_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2026370_2028587_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2028600_2029059_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2029216_2029561_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2029717_2030623_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2030709_2031723_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2033702_2034719_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	2050269	2114638	4111640	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2050269_2051220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2051441_2052392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2052490_2053456_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2053593_2054493_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2057087_2058575_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2058585_2059782_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2059854_2061174_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2061170_2062046_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2062076_2063225_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2063242_2063557_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2063578_2064301_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2064300_2065119_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2065123_2065651_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2065656_2066913_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2067271_2068411_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2068488_2069361_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2070231_2071182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2071141_2071777_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2072136_2073459_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2073777_2074599_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2076023_2076596_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2076635_2078465_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2078427_2079486_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2079523_2079985_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2080069_2080816_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2082306_2085537_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2085603_2086935_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2087187_2087562_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2087664_2088843_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2088853_2089444_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2089554_2090361_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2090386_2091181_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2092181_2093156_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2093314_2093827_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2093983_2094955_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2096699_2097506_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2097502_2098804_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2098754_2099519_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2099632_2100403_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2100487_2101675_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2101747_2102122_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2102222_2103485_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2103481_2104339_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2104511_2105513_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2105964_2106915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2108430_2109630_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2109998_2110235_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2110298_2110466_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2110579_2112385_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2112638_2113589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2113687_2114638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	2301106	2362454	4111640	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2301106_2302057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2302173_2302893_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2303065_2304052_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2304052_2304535_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2304538_2305822_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2305818_2306757_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2306753_2308463_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2308472_2309720_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2311330_2312620_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2313757_2314516_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2315192_2315936_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2316010_2316751_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2316946_2317783_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2317833_2318604_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2318653_2319706_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2319702_2320329_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2320325_2321360_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2321538_2322555_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2322653_2323604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2326344_2327634_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2327752_2328190_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2328233_2329442_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2329588_2330053_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2330076_2331027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2332011_2332785_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2332781_2333780_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2333864_2334641_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2334796_2336401_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2336781_2337906_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2338032_2338656_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2338652_2340554_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2340602_2341397_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2341409_2342411_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2342407_2342914_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2342906_2343755_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2343852_2344395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2344438_2345389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2345544_2345871_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2345867_2346152_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2346148_2346628_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2346624_2348253_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2348249_2348594_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2348593_2351527_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2352685_2353636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2353734_2354031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2354137_2355055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2355059_2355773_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2355786_2356758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2358477_2358858_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2358861_2360049_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2360472_2361210_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2361503_2362454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	2383245	2454399	4111640	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2383245_2384196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2384748_2386374_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2386423_2387458_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2387460_2388807_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2388803_2390318_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2390308_2391319_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2391792_2392734_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2392742_2393711_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2395250_2396219_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2396396_2397386_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2397432_2398191_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2398380_2399118_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2399216_2400167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2400351_2401134_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2401127_2401829_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2402068_2402671_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2403997_2404948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2404944_2406501_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2406493_2407267_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2407325_2408276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2408357_2409533_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2409546_2411604_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2411600_2412626_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2412637_2413927_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2413949_2415047_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2415043_2415934_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2415930_2418015_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2418046_2419216_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2419257_2419998_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2419997_2420768_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2421092_2421260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2421623_2422409_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2422435_2424520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2424687_2426643_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2426966_2427467_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2427565_2429092_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2429229_2430117_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2430131_2431085_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2431136_2433227_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2433242_2433629_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2436322_2437126_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2438419_2439322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2439386_2440163_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2440484_2441534_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2441657_2443328_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2443332_2444127_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2444225_2445176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2445195_2446101_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2446178_2446877_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2447036_2447981_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2447990_2449478_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2449477_2450545_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2450608_2452021_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2452206_2453427_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2453448_2454399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	2539647	2590819	4111640	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2539647_2540598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2540696_2541467_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2541463_2542135_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2542131_2542773_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2542785_2543706_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2543866_2545027_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2545068_2546019_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2546683_2546884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2547006_2548701_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2548822_2549092_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2549207_2549606_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2549616_2550573_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2550709_2551255_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2551275_2553225_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2553612_2554389_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2554394_2554787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2555208_2556159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2556155_2557253_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2557284_2558235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2560016_2561258_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561269_2562043_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562069_2563020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563118_2563901_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563989_2565216_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2565941_2567327_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567345_2567951_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567947_2569804_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569800_2570601_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570615_2571809_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571876_2572851_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572973_2574197_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574307_2576512_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576806_2577466_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577473_2577680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578018_2578774_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2578789_2578951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2579044_2579560_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579832_2580150_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2580094_2580739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580864_2582220_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582266_2583607_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583708_2584341_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2584340_2586701_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586742_2587702_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587688_2588375_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2588371_2588704_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588819_2589770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589868_2590819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	2689114	2729783	4111640	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689114_2690065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690175_2690358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690457_2691054_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691237_2692329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692828_2693239_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2693297_2693639_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2693644_2696062_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696074_2697097_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697171_2697531_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697546_2697744_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698079_2699030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699224_2699674_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699670_2700621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700731_2702180_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2702294_2702576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702679_2703630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703874_2704588_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704710_2704938_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705232_2705871_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705979_2707014_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707010_2707961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708376_2708901_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708904_2709174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709372_2710434_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710517_2712152_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712153_2712957_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712985_2713945_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713948_2715463_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715499_2716504_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716935_2717406_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717441_2718053_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718083_2718707_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718787_2720320_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2720354_2721596_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721639_2722671_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722667_2723837_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2723830_2724511_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2724672_2725515_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725677_2726649_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726820_2727699_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727721_2728792_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728832_2729783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	2785248	2858118	4111640	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785248_2785665_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785775_2786408_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786436_2786880_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786901_2787993_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2788047_2788848_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788983_2789604_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2789743_2790217_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791356_2792307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792303_2799965_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800205_2804252_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804564_2805146_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805142_2806441_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806520_2807549_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807809_2808760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808756_2809707_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810023_2810629_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810682_2811996_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812070_2812541_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812540_2813329_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813339_2814992_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815079_2816030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817191_2817698_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817694_2818459_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818474_2818759_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818823_2819813_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819984_2820914_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820885_2821572_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821605_2822151_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822195_2823461_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823457_2824360_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825541_2826486_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826580_2828098_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828139_2829768_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829875_2830757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833869_2834244_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834268_2834607_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834650_2836285_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836323_2837670_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837777_2839199_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839268_2839853_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839955_2840906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841040_2842147_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842157_2843255_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843399_2844605_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844611_2845133_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845129_2845621_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845617_2845869_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845849_2846335_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846470_2849932_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849949_2850834_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850843_2851275_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851521_2852025_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852102_2853503_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853577_2854453_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854449_2855457_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855924_2856230_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856320_2856911_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857101_2858118_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	2861261	2928071	4111640	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2861261_2862212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862310_2863261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863257_2864052_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864083_2864788_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864862_2865663_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865659_2866067_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866063_2866705_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866697_2868698_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869958_2871290_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871286_2872237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873943_2874210_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874917_2875256_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879808_2880411_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880507_2881797_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881854_2882586_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882582_2883386_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883382_2884471_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884467_2885397_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885545_2886691_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886712_2887663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887680_2887839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887993_2891815_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891971_2892640_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892644_2894318_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894336_2895656_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895660_2897976_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898031_2900200_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900196_2905386_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905475_2905790_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906017_2906263_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906357_2906876_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906975_2908181_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908296_2909694_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909810_2910389_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910461_2911853_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912020_2912971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913251_2913872_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913868_2914282_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914278_2915322_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915377_2915566_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915575_2916340_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916430_2917087_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917178_2917937_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917962_2919564_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919764_2920769_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920869_2921133_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921250_2922027_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922617_2923568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925951_2927064_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927120_2928071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	2958457	2997646	4111640	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2958457_2959408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959425_2959575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959528_2960425_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962702_2964928_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965092_2966181_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966137_2966791_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966838_2967636_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968167_2969118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969192_2970347_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970403_2971354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971452_2971758_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971786_2972221_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972222_2973467_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973463_2974174_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974188_2975100_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975462_2975867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975863_2976322_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976328_2977237_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977233_2978100_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978086_2978914_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978924_2980052_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_077069115.1|2981129_2982368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982409_2983672_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983678_2984431_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984482_2984668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984943_2985408_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985439_2986099_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986243_2988352_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988348_2989299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989402_2990023_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990114_2990867_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992001_2993126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993171_2993540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993781_2994732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995767_2996310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996507_2996678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996695_2997646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	3383142	3503387	4111640	transposase,tRNA	Acinetobacter_phage(20.0%)	100	NA	NA
WP_023995489.1|3383142_3384093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384497_3385142_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385166_3385751_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385851_3386469_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386471_3388187_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388183_3388492_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388508_3389126_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389170_3389473_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389573_3390428_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390615_3390840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391009_3391282_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391699_3392107_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392476_3393271_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393371_3394607_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394675_3395692_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395703_3397080_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397076_3398273_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398269_3399808_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399804_3401064_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403004_3403955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404721_3405816_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405808_3407143_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407096_3407780_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407805_3408969_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3408965_3409967_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409966_3410839_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410835_3411585_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411581_3412373_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412369_3413509_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413784_3414570_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414603_3415386_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415389_3415779_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3416918_3417782_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3417817_3418906_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418902_3419853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420206_3423185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424111_3424990_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3425954_3426905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3427987_3428938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428934_3429402_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429444_3430215_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3430235_3431036_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431046_3432456_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432550_3433336_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433575_3434592_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434699_3435092_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435229_3435910_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435914_3436886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436981_3437932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439436_3440138_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3440137_3441562_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3442631_3443972_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3444087_3445851_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445962_3446841_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446953_3447769_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447772_3448024_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448108_3449125_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449455_3449677_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452037_3452955_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453452_3454661_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454740_3456312_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456429_3457365_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457553_3458498_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459065_3464783_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464788_3465916_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465971_3466598_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3466869_3467886_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467981_3468692_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468688_3469678_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469773_3471405_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471407_3472145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472300_3473173_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3473441_3474662_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474658_3475318_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475389_3476022_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476051_3476570_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476580_3477690_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477736_3478591_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478592_3479495_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480717_3481668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483424_3484414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3484410_3484569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3484589_3485378_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485374_3486406_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486424_3486988_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487043_3488564_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488827_3489532_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3489539_3490277_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490382_3490757_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490799_3492089_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492085_3493255_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493251_3494091_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494150_3495086_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495098_3496049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496147_3497110_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497141_3497501_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497625_3498528_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498529_3500302_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500336_3501113_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502436_3503387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	3518325	3577447	4111640	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518325_3519276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519404_3520538_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520581_3521487_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521489_3523190_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523186_3524107_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524114_3525092_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525150_3526185_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3528159_3528396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528522_3529386_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529474_3530296_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530375_3531113_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3531109_3532102_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3532215_3532878_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532922_3534071_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3536394_3537345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537685_3538636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538734_3539685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539981_3540479_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540521_3542297_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542304_3543171_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543177_3543912_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545081_3545876_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546165_3546756_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546789_3548118_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548192_3549338_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549449_3550448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550410_3550845_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552361_3553246_+	DMT family transporter	NA	NA	NA	NA	NA
WP_005013747.1|3553385_3554336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929972.1|3555493_3556354_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3556466_3558257_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3558297_3558963_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3558963_3559272_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559437_3560724_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3562157_3563108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565059_3566274_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566379_3567369_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567365_3567974_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567986_3568616_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568612_3569233_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569264_3570056_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570907_3571363_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3571381_3572308_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572361_3573648_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574578_3575451_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575447_3576398_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576496_3577447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011749	Bordetella pertussis strain I977 chromosome, complete genome	4111640	4033811	4087243	4111640	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4033811_4034762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034931_4036158_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4036357_4037224_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4037216_4038179_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4038279_4039230_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4039328_4040279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4040377_4041328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4041324_4042818_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4042814_4045922_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4045918_4048987_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4048983_4050234_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4050414_4051176_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4051208_4051859_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4051861_4052701_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4052941_4053685_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4053767_4054115_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4054212_4055055_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4055099_4055987_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4056013_4056202_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4056299_4057757_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4057743_4059270_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4059288_4059756_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4059755_4060778_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4060898_4061618_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4061693_4062794_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4062795_4063986_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4064105_4065122_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4065440_4066112_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4066108_4067017_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4067228_4067876_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4071727_4072804_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4072814_4073624_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4073713_4074487_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4074487_4074652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4074669_4075620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4075508_4076531_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4076520_4077675_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4077714_4079127_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4079251_4080118_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4080119_4080944_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4080940_4081702_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4081782_4082469_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4082642_4083650_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4083646_4084426_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4084483_4085746_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4086292_4087243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
