The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	27282	70036	4107604	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	232666	307010	4107604	transposase	uncultured_Mediterranean_phage(15.38%)	55	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268689.1|250561_250738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	489373	607266	4107604	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490422_491373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494549_495362_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495398_495725_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495729_496290_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498552_499929_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502319_502709_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503170_504121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505166_506039_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509254_509710_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512643_513252_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514343_515558_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517509_518460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519893_521180_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|521654_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524263_525124_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526322_527207_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529120_530119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530230_531376_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536397_537264_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539089_539587_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539883_540834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542223_543174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545497_546646_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|546690_547353_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548455_549193_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|549272_550094_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023995266.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553383_554418_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558081_558987_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559030_560164_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560292_561243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561341_563411_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568081_568504_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568513_569914_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569956_570862_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570960_572502_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572536_573076_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573088_573559_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574055_574937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575009_575330_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|576181_577132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579266_581039_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583519_584470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584482_585418_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586313_587483_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587479_588769_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|589291_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592580_593144_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594190_594979_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|594999_595158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|595154_596144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597898_598849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600071_600974_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600975_601830_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601876_602986_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602996_603515_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603544_604177_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604248_604908_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|604904_606125_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606393_607266_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	611680	675513	4107604	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611680_612697_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612968_613595_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|613650_614778_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614783_620501_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621068_622013_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622201_623137_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623254_624826_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624905_626114_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626611_627529_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629889_630111_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630441_631458_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631542_631794_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631797_632613_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632725_633604_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633715_635479_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635594_636935_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638004_639429_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639428_640130_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641634_642585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642680_643652_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643656_644337_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644474_644867_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644974_645991_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646230_647016_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647110_648520_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648530_649331_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649351_650122_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|650164_650632_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650628_651579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653527_654406_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655332_658311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658664_659615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659611_660700_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660735_661599_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|662738_663128_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|663131_663914_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663947_664733_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665008_666148_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666144_666936_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666932_667682_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667678_668551_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668550_669552_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_024000003.1|669548_670712_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|670737_671421_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671374_672709_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672701_673796_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674562_675513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	694424	771733	4107604	protease,integrase,transposase,tRNA	Bacillus_phage(20.0%)	58	741561:741579	761449:761467
WP_023995489.1|694424_695375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695473_696949_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698536_699424_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699426_700368_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700413_701979_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703756_705082_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705264_706722_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706685_707183_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707213_708185_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|708237_708675_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708798_709467_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710195_711299_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|711401_712679_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712690_713716_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713717_715088_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|715088_716225_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716271_718197_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718193_719315_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719311_720466_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720462_721593_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721600_723166_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723172_724555_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724833_725445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725536_726952_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726969_727680_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727676_728999_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729078_731040_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731165_732479_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732587_733886_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734068_734977_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734986_735196_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735207_736887_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736988_737942_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738032_738860_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738858_740745_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740741_741341_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741389_742289_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741561:741579	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742497_743448_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743570_744185_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744313_744910_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744906_745689_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745761_746853_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747132_748260_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748601_749648_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|749795_752915_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|752916_755868_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755883_757095_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|757278_758229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758245_758740_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758743_759001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759544_760456_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760537_760822_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761605_762556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761449:761467	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762974_765539_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765583_767437_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|767769_769341_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|770609_770765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|770782_771733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	1026022	1119010	4107604	transposase	Bacillus_virus(30.0%)	86	NA	NA
WP_005012067.1|1026022_1026973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1027075_1027738_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1027832_1028003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1028355_1029357_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1029359_1030556_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1030576_1031380_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1031460_1031757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1031787_1032351_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1032391_1033249_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1033256_1034006_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1034027_1034900_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1034928_1035708_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1035741_1036539_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1039193_1039586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1039579_1040440_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1040443_1041406_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1042182_1042872_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1043732_1044683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1045032_1045902_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1045972_1046668_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1046657_1047167_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1047163_1048384_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1048331_1049234_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1050120_1051407_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1051445_1052819_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1052857_1053559_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1053857_1054847_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1054947_1055409_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1055424_1055973_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1056114_1057590_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1057695_1058787_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1058790_1059573_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1059582_1060371_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1061496_1061931_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1061927_1062938_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1062981_1063908_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1064194_1064563_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1064615_1064762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1064779_1065730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1065774_1068201_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1068249_1068942_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1069014_1070214_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1070231_1071137_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1071252_1072182_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1072207_1073554_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1073581_1074331_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1074344_1075127_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1075319_1076270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1076331_1077441_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1077953_1078790_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1078859_1079825_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1079821_1080772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1080789_1080960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1081157_1081700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1082735_1083686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1083927_1084296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1084341_1085466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1086600_1087353_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1087444_1088065_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1088168_1089119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1089115_1091224_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1091368_1092028_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1092059_1092524_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1092799_1092985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1093036_1093789_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1093795_1095058_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1095099_1096338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1097415_1098543_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1098553_1099381_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1099367_1100234_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1101600_1102005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1102367_1103279_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1103293_1104004_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1104000_1105245_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1105246_1105681_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1105709_1106015_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1106113_1107064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1107120_1108275_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1108349_1109300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1109831_1110629_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1110676_1111330_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1111286_1112375_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1112539_1114765_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1117042_1117939_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1117892_1118042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1118059_1119010_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	1149396	1220365	4107604	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1149396_1150347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1150403_1151516_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1153899_1154850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1155440_1156217_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1156334_1156598_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1156698_1157703_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1157903_1159505_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1159530_1160289_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1160380_1161037_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1161127_1161892_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1161901_1162090_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1162145_1163189_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1163185_1163599_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1163595_1164216_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1164496_1165447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1165614_1167006_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1167078_1167657_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1167773_1169171_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1169286_1170492_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1170591_1171110_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1171204_1171450_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1171677_1171992_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1172081_1177271_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1177267_1179436_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1179491_1181807_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1181811_1183131_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1183149_1184823_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1184827_1185496_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1185652_1189474_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_158322896.1|1189628_1189787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1189804_1190755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1190776_1191922_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1192070_1193000_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1192996_1194085_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1194081_1194885_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1194881_1195613_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1195670_1196960_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1197056_1197659_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1202211_1202550_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1203257_1203524_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1205230_1206181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1206177_1207509_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1208769_1210770_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1210762_1211404_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1211400_1211808_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1211804_1212605_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1212679_1213384_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1213415_1214210_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1214206_1215157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1216303_1216738_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1216820_1219157_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1219348_1220365_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	1339953	1405261	4107604	transposase,tRNA	Bacillus_virus(18.18%)	57	NA	NA
WP_003810552.1|1339953_1340688_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003818637.1|1340704_1342525_+	translational GTPase TypA	NA	NA	NA	NA	NA
WP_010928248.1|1342595_1343321_-	toxin	NA	NA	NA	NA	NA
WP_003818640.1|1343317_1343722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930272.1|1343873_1344503_-	TIGR00730 family Rossman fold protein	NA	F4YCQ1	Synechococcus_phage	27.1	6.6e-08
WP_010930273.1|1344555_1347270_+	DNA polymerase I	NA	B6V2J7	Bacillus_phage	30.7	5.0e-68
WP_010930274.1|1347380_1348217_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010930275.1|1348271_1349060_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010930276.1|1349093_1350755_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_010930277.1|1350922_1352314_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_003810571.1|1352451_1353111_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_023852880.1|1353146_1355972_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_003810577.1|1359745_1361002_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_023852918.1|1361114_1361441_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	46.2	1.3e-18
WP_010930279.1|1361733_1363695_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	35.5	4.2e-93
WP_010930280.1|1363694_1364303_+	YcxB family protein	NA	NA	NA	NA	NA
WP_010930281.1|1364320_1366636_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.5	4.5e-78
WP_010930282.1|1366638_1367853_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1367849_1368800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1368898_1369849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1370617_1371256_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1372145_1372592_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1372673_1373375_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1373375_1374143_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1374139_1375378_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1375377_1376304_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1376406_1377522_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1377537_1378488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1378841_1379423_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1379419_1380253_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1380463_1381777_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1381953_1382835_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1382854_1383706_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1383758_1384847_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1384957_1386085_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1386319_1386931_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1387029_1387980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1388201_1388579_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1388726_1389224_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1389220_1389748_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1389881_1390697_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1390709_1391891_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1391938_1392832_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1392958_1393429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1393554_1394382_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1394410_1395187_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1395183_1395459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1395473_1395938_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1395949_1396651_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1396760_1397261_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1397343_1398522_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1400149_1400485_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1400672_1402121_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1402178_1402523_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1402629_1403169_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1403261_1404212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1404310_1405261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	1433376	1499876	4107604	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1433376_1434327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1434392_1434572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1434688_1435444_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1435430_1436576_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1437483_1438434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1438621_1439824_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1439820_1440579_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811375.1|1440972_1441605_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1442560_1445161_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1445148_1448568_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1448575_1449481_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1449619_1450198_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1450194_1451106_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1451119_1451800_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1452001_1454041_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_014486069.1|1454059_1455046_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1455071_1455869_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1455865_1457059_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1457055_1458018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1458035_1459076_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1459063_1459672_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1461260_1462256_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1462275_1463454_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1463464_1464382_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1464437_1465388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1465486_1466257_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1466253_1466934_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1467000_1467789_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1468035_1469052_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1469357_1470512_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1475017_1475500_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1475517_1475808_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1475934_1476645_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1476828_1477236_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1477248_1477668_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1477715_1478420_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1478485_1479907_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1479945_1480710_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1480753_1481539_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1481538_1482228_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1482230_1483364_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1483381_1484404_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1484473_1486120_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1486153_1487686_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930331.1|1487764_1489585_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1489705_1491325_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1491503_1492946_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1493162_1494179_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1494225_1495014_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1495036_1495306_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1495322_1496114_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1496125_1496467_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1496477_1496978_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1496970_1497981_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1497983_1498556_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1498925_1499876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	1528045	1566635	4107604	protease,transposase	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1528045_1529380_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1529432_1531769_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1531894_1532458_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1532466_1533558_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1533629_1534085_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1534085_1534880_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1534876_1536058_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1536044_1536650_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1536646_1537420_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1537431_1538259_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1538420_1540784_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1540851_1541571_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1541694_1542120_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1542154_1543105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1543222_1544149_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1544214_1545372_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1545352_1545820_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1545967_1546918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1546934_1547369_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1547358_1547709_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1547905_1549060_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1549056_1550229_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1550276_1551170_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1551215_1551653_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1551712_1552402_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1552411_1553362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1553460_1554411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1554509_1555472_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1555698_1556853_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1556863_1560106_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1561127_1561772_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1561782_1562682_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1562729_1563815_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1563811_1565506_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_162268680.1|1565502_1565667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1565684_1566635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	1800762	1859753	4107604	transposase	Enterobacteria_phage(33.33%)	59	NA	NA
WP_010929591.1|1800762_1801713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1801709_1803032_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1803132_1803450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1803583_1804897_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1804927_1806565_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1807188_1807665_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1807966_1808917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698385.1|1808934_1809078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930833.1|1809260_1809716_+	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_003809869.1|1809751_1810018_-	type III secretion system protein BscF	NA	NA	NA	NA	NA
WP_003820040.1|1810007_1810307_-	type III secretion system protein BscE	NA	NA	NA	NA	NA
WP_010930832.1|1810347_1811628_-	SctD family type III secretion system inner membrane ring subunit BscD	NA	NA	NA	NA	NA
WP_010930831.1|1811624_1813724_-	SctV family type III secretion system export apparatus subunit BcrD	NA	NA	NA	NA	NA
WP_010930830.1|1813720_1814089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930829.1|1814085_1814496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930828.1|1814500_1814878_-	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_010930827.1|1814874_1815972_-	SctW family type III secretion system gatekeeper subunit BopN	NA	NA	NA	NA	NA
WP_003820049.1|1816135_1816753_+	type III secretion system needle tip complex Bsp22	NA	NA	NA	NA	NA
WP_010930826.1|1816774_1817050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568102.1|1817065_1817551_+	SycD/LcrH family type III secretion system chaperone BcrH1	NA	NA	NA	NA	NA
WP_010930825.1|1817598_1818540_+	type III secretion system translocon subunit SctB	NA	NA	NA	NA	NA
WP_010930824.1|1818563_1819772_+	type III secretion system translocon subunit BopB	NA	NA	NA	NA	NA
WP_003809889.1|1819795_1820257_+	SycD/LcrH family type III secretion system chaperone BcrH2	NA	NA	NA	NA	NA
WP_010930823.1|1820261_1820783_+	type III secretion system protein Bcr4	NA	NA	NA	NA	NA
WP_019248576.1|1820779_1821187_+	SctI family type III secretion system inner rod subunit BscI	NA	NA	NA	NA	NA
WP_003820059.1|1821999_1822662_+	type III secretion system sorting platform protein BscK	NA	NA	NA	NA	NA
WP_010930820.1|1822631_1823270_+	SctL family type III secretion system stator protein BscL	NA	NA	NA	NA	NA
WP_003820061.1|1823274_1824609_+	SctN family type III secretion system ATPase BscN	NA	NA	NA	NA	NA
WP_003820063.1|1824608_1825118_+	type III secretion system central stalk protein BscO	NA	NA	NA	NA	NA
WP_010930819.1|1825114_1825663_+	type III secretion system protein BscP	NA	NA	NA	NA	NA
WP_010930818.1|1825659_1826739_+	SctQ family type III secretion system cytoplasmic ring protein BscQ	NA	NA	NA	NA	NA
WP_004568087.1|1826735_1827407_+	SctR family type III secretion system export apparatus subunit BscR	NA	NA	NA	NA	NA
WP_010930817.1|1827412_1827679_+	SctS family type III secretion system export apparatus subunit BscS	NA	NA	NA	NA	NA
WP_010930816.1|1827690_1828491_+	SctT family type III secretion system export apparatus subunit BscT	NA	NA	NA	NA	NA
WP_010930815.1|1828487_1829537_+	SctU family type III secretion system export apparatus subunit BscU	NA	NA	NA	NA	NA
WP_010930814.1|1829533_1829932_+	type III secretion system protein BscW	NA	NA	NA	NA	NA
WP_010930813.1|1829922_1831725_+	SctC family type III secretion system outer membrane ring subunit BscC	NA	NA	NA	NA	NA
WP_003809919.1|1831745_1832348_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930812.1|1832522_1833221_-	type III secretion system regulator BspR	NA	NA	NA	NA	NA
WP_023995090.1|1833257_1833458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905553.1|1834784_1835972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930809.1|1835968_1837990_-	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_023995091.1|1838074_1840516_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930807.1|1840512_1841676_-	alanine racemase	NA	NA	NA	NA	NA
WP_003809933.1|1841759_1842188_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003820087.1|1842331_1842682_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_010930806.1|1842678_1844136_-	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930805.1|1844790_1847502_+	autotransporter BapA	NA	NA	NA	NA	NA
WP_003809939.1|1847760_1848033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930522.1|1848029_1848980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1849078_1850029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1850127_1852728_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1852834_1853839_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1853947_1855288_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1855328_1856357_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1856552_1857098_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1857094_1857655_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1857753_1858704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1858802_1859753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2033652	2103304	4107604	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|2033652_2036310_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2036387_2037590_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2037586_2038099_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2038221_2038659_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2038935_2039886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|2039984_2040935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|2041188_2042994_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2043107_2043275_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2043338_2043575_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2043943_2045143_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2046658_2047609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2048060_2049062_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2049234_2050092_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2050088_2051351_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2051451_2051826_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2051898_2053086_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2053170_2053941_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2054054_2054819_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2054769_2056071_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2056067_2056874_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2058618_2059590_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2059746_2060259_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2060417_2061392_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2062392_2063187_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2063212_2064019_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2064129_2064720_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2064730_2065909_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2066011_2066386_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2066638_2067970_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2068036_2071267_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2072757_2073504_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2073588_2074050_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2074087_2075146_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2075108_2076938_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2076977_2077550_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2078974_2079796_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2080114_2081437_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2081796_2082432_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2082391_2083342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2084212_2085085_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2085162_2086302_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2086660_2087917_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2087922_2088450_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2088454_2089273_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_062810228.1|2089272_2089995_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2090016_2090331_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2090348_2091497_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2091527_2092403_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2092399_2093719_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2093791_2094988_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2094998_2096486_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2099080_2099980_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2100117_2101083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2101181_2102132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2102353_2103304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2114800	2243776	4107604	transposase,protease,tRNA	Klosneuvirus(18.75%)	118	NA	NA
WP_005013747.1|2114800_2115751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2116888_2117185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2117359_2118712_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2118854_2119871_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2121850_2122864_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2122950_2123856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2124012_2124357_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2124514_2124973_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2124986_2127203_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2127199_2128261_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2128289_2129264_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2129215_2130034_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2130046_2130655_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2130829_2131225_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2131243_2132683_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2132711_2133059_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2133077_2134028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2134680_2135631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2135714_2137532_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2137605_2138253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2138265_2139195_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2139364_2139829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2140076_2140757_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2140805_2142497_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2142512_2143064_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2143060_2143432_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2143544_2144381_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2144391_2144916_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2145013_2145193_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2145322_2146297_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2146427_2146784_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2146773_2147649_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2147747_2148632_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2148653_2149949_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2150897_2151548_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2151635_2153156_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2153413_2155279_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_162268681.1|2156243_2156384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2157198_2157558_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2157545_2158982_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2158978_2159632_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2159628_2160822_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2160925_2162200_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2162196_2163147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268682.1|2163164_2163419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2163313_2164288_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2164284_2164428_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2166049_2166712_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2166714_2166891_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2166887_2167826_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2167917_2169408_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2169493_2169646_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2169659_2169899_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2169994_2170738_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2170770_2171271_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2171333_2172293_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2172289_2173051_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2173066_2174152_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2174351_2175302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2175400_2176351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2176310_2176724_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2177008_2177308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2177717_2180000_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2180465_2180660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2180685_2182716_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2182735_2182948_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2183225_2183765_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2183878_2185174_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2185250_2186408_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2186591_2187491_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2187509_2188814_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2188779_2189886_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2189973_2190210_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2190348_2191419_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2191422_2192778_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2192804_2193965_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2193967_2194606_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2194607_2195894_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2195952_2197248_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2197254_2197761_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2197757_2198906_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2198933_2199359_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2199681_2202564_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2202656_2203412_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2204177_2205527_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2205625_2206576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2206674_2207625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2207698_2208172_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2208197_2209406_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2209402_2210176_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2210175_2210799_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2210964_2211225_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2211528_2212110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2212176_2212431_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2212417_2215042_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2215113_2215932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2215928_2216534_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2216571_2217705_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2219420_2219795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2219892_2221167_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2221170_2222748_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2223654_2225010_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2225006_2226641_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2226633_2227464_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2227481_2228426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2228478_2230053_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2230100_2230460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2230452_2230773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2230888_2231821_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2231923_2232880_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2233029_2234367_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2234371_2235628_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2235823_2236870_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2236927_2237296_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2237426_2238299_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2238375_2239278_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2240334_2241552_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2242825_2243776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2393349	2455890	4107604	transposase,tRNA	Pandoravirus(20.0%)	54	NA	NA
WP_004568494.1|2393349_2393856_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2393848_2394697_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2394794_2395337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2395380_2396331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2396486_2396813_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2396809_2397094_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2397090_2397570_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2397566_2399195_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2399191_2399536_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2399535_2402469_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2403627_2404578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2404676_2404973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2405079_2405997_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2406001_2406715_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2406728_2407700_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2409419_2409800_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2409803_2410991_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2411414_2412152_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2412445_2413396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|2413392_2413821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|2415222_2416185_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2416300_2417254_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|2417263_2418256_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|2418307_2419063_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|2419127_2419817_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|2420038_2420989_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|2421019_2422216_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|2422206_2422986_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|2423098_2424025_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|2424110_2425055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|2425032_2425902_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|2426145_2426769_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_019247905.1|2427083_2427383_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|2427396_2430471_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|2430600_2431275_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|2431267_2433082_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|2433135_2434083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2434187_2435138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2435690_2437316_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2437365_2438400_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2438402_2439749_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2439745_2441260_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2441250_2442261_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2442734_2443676_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2443684_2444653_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2446192_2447161_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2447338_2448328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2448374_2449133_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2449322_2450060_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2450158_2451109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2451293_2452076_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2452069_2452771_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2453010_2453613_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2454939_2455890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2495167	2561496	4107604	transposase	Ectocarpus_siliculosus_virus(11.11%)	56	NA	NA
WP_005012067.1|2495167_2496118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2496137_2497043_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2497120_2497819_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2497978_2498923_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2498932_2500420_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2500419_2501487_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2501550_2502963_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2503148_2504369_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2504390_2505341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|2505439_2506081_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2506207_2508010_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2509661_2510567_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2510748_2512125_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2512291_2513032_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2513168_2514095_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|2514367_2514523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|2514660_2514945_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2515003_2516494_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2516738_2517338_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2517342_2518113_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2518350_2519064_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2519060_2519978_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|2520113_2520746_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|2520787_2520991_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2521015_2523295_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2523307_2524036_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2524032_2524692_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2524760_2525513_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2525694_2526645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|2527537_2528443_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010930437.1|2528454_2529582_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|2529670_2530285_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|2530943_2532131_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|2532127_2534725_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2534979_2535195_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2535650_2536205_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|2536472_2537033_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|2537144_2538449_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2538445_2539957_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|2540062_2541064_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|2541053_2542166_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2542264_2543215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2543211_2543838_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|2543897_2544749_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930426.1|2544852_2545452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2545448_2546213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2546282_2547233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930424.1|2547331_2547940_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010930423.1|2547990_2548317_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_023995689.1|2548363_2550589_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930421.1|2551256_2554661_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_010930420.1|2554673_2557334_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_004568212.1|2557355_2557502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|2557537_2558740_-	MFS transporter	NA	NA	NA	NA	NA
WP_023994932.1|2559426_2560539_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|2560545_2561496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2589541	2640713	4107604	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2589541_2590492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2590590_2591361_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2591357_2592029_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2592025_2592667_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2592679_2593600_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2593760_2594921_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2594962_2595913_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2596577_2596778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2596900_2598595_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2598716_2598986_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2599101_2599500_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2599510_2600467_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2600603_2601149_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2601169_2603119_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2603506_2604283_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2604288_2604681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2605102_2606053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2606049_2607147_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2607178_2608129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2609910_2611152_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2611163_2611937_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2611963_2612914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2613012_2613795_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2613883_2615110_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2615835_2617221_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2617239_2617845_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2617841_2619698_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2619694_2620495_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2620509_2621703_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2621770_2622745_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2622867_2624091_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2624201_2626406_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2626700_2627360_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2627367_2627574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2627912_2628668_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2628683_2628845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2628938_2629454_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2629726_2630044_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2629988_2630633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2630758_2632114_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2632160_2633501_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2633602_2634235_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2634234_2636595_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2636636_2637596_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2637582_2638269_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2638265_2638598_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2638713_2639664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2639762_2640713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2739008	2779677	4107604	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2739008_2739959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2740069_2740252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2740351_2740948_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2741131_2742223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2742722_2743133_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2743191_2743533_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2743538_2745956_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2745968_2746991_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2747065_2747425_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2747440_2747638_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2747973_2748924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2749118_2749568_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2749564_2750515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2750625_2752074_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2752188_2752470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2752573_2753524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2753768_2754482_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2754604_2754832_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2755126_2755765_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2755873_2756908_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2756904_2757855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2758270_2758795_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2758798_2759068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2759266_2760328_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2760411_2762046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2762047_2762851_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2762879_2763839_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2763842_2765357_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2765393_2766398_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2766829_2767300_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2767335_2767947_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2767977_2768601_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2768681_2770214_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2770248_2771490_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2771533_2772565_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2772561_2773731_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2773724_2774405_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2774566_2775409_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2775571_2776543_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2776714_2777593_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2777615_2778686_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2778726_2779677_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2783788	2860638	4107604	transposase,tRNA	Bacillus_virus(25.0%)	56	NA	NA
WP_005013747.1|2783788_2784739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2785488_2785923_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2785915_2787151_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2787158_2787953_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2787949_2788753_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2788779_2789757_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2789785_2791357_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2791367_2792189_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2793913_2795344_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2795356_2796046_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2796141_2797482_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2797483_2797741_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2798094_2799687_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2799783_2801244_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2801466_2802078_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2805824_2806775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2807190_2809827_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2809823_2810948_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2810944_2812327_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2812462_2812930_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2813051_2813720_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_019249399.1|2813849_2814995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2814996_2816727_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2816844_2817153_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2817165_2817978_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2818858_2819947_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2821149_2821938_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2821977_2823582_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2823662_2824403_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2824410_2824905_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2825277_2826297_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2826293_2827676_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2827708_2828569_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2829572_2830454_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2830512_2830950_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2831040_2832012_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2832050_2832995_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2833090_2833900_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2833976_2834351_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2834457_2835150_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2835142_2835559_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2835669_2836302_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2836330_2836774_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2836795_2837887_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2837941_2838742_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2838877_2839498_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2839637_2840111_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2841250_2842201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2842197_2849859_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2850099_2854146_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2854458_2855040_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2855036_2856335_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2856414_2857443_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2857703_2858654_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2858650_2859601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2859687_2860638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2895461	2968786	4107604	protease,transposase,tRNA	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2895461_2896817_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2898295_2899018_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2899072_2900056_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2900185_2901136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2901132_2902035_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2902122_2902881_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2902893_2903985_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2904082_2905510_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2905739_2906954_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2906999_2909870_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2912280_2912769_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2912894_2915591_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2915745_2918028_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2918201_2918825_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2918923_2919874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2919920_2920475_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2920542_2921388_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2921457_2922426_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2922425_2923289_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2926121_2930048_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2930783_2934014_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2934295_2935123_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2935156_2935852_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2935844_2937125_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2937134_2938112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2938093_2939794_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2939896_2941000_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2941030_2941786_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2941792_2943313_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2943355_2943658_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2943654_2944287_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2944365_2946231_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2946227_2947022_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2947050_2948166_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2949070_2949949_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2949948_2950773_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2950940_2951891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2952103_2954953_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2954934_2955663_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2955803_2957267_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2957263_2957635_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2957652_2958966_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2959002_2959461_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2959415_2959556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2959573_2960524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2960520_2961534_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2961673_2962660_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2963018_2963726_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2964306_2965257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2965408_2966011_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2966029_2966662_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2966706_2966958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2966899_2968786_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	2980511	3031173	4107604	transposase,holin,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2980511_2981462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2981488_2981953_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2983159_2985448_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2985564_2986437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2986479_2987634_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2987668_2988499_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2988582_2990127_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2990169_2990529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2990530_2990944_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2990984_2991302_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2991386_2992103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2992366_2993788_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|2994990_2995941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2997983_2999000_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2999335_2999977_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|3000067_3001504_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3001661_3002735_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3002731_3003868_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3004012_3004357_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3004423_3006304_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3006353_3007289_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3007621_3008638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3009575_3011003_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3010999_3012022_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3012011_3012485_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3012625_3013513_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3013509_3015153_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3015149_3016199_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3016987_3018004_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3018103_3018736_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3018744_3019134_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3019186_3020239_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3021102_3022809_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3022882_3023383_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3023397_3025455_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3025481_3025775_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3025876_3026824_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3026836_3027712_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3027832_3028393_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3028427_3028751_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3029186_3029924_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3030222_3031173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	3052124	3124618	4107604	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3052124_3053075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3053117_3054293_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3054514_3056305_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3056317_3057979_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3057991_3060697_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3060989_3062744_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3062740_3063367_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3063363_3064215_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3064290_3066405_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3066591_3067206_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3067351_3067603_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3067672_3069055_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3069051_3072231_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3073038_3073956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3074007_3074739_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3074798_3075371_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3076879_3077896_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3078033_3079083_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3079187_3080138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3080233_3080959_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3081169_3081550_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3081855_3082728_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3082735_3083116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3083269_3084544_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3086031_3086940_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3087737_3088802_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3090638_3091640_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3091862_3092504_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3092586_3094413_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3094656_3095586_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3095585_3096335_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3096406_3097321_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3097340_3098486_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3098546_3099458_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3099538_3100489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3100587_3101172_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3101206_3102196_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3102192_3103134_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3103130_3104351_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3104393_3104708_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3104899_3105259_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3105260_3106976_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3107163_3107835_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3107849_3109178_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3109174_3110074_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3110160_3111246_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3111238_3112372_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3112371_3115053_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3115423_3116005_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3116130_3116856_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3116852_3117530_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3117745_3118927_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3119699_3119882_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3119911_3120862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3120991_3121384_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3121660_3122572_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3122696_3123671_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3123667_3124618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	3138125	3191643	4107604	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3138125_3139076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3139188_3139440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3139945_3141064_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3141183_3141396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3141555_3141777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3141829_3142780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3143956_3145327_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3145359_3146151_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3146163_3147219_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3147244_3148120_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3148225_3148474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3148508_3149963_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3149959_3150481_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3150509_3151862_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3152085_3154974_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3157118_3158420_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3158434_3159151_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3159432_3160113_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3160124_3160292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3160400_3160547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3160640_3161300_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3161698_3163531_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3163527_3164478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3165641_3167357_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3167367_3167859_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3167931_3168948_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3169115_3169895_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3169913_3170441_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3170734_3171004_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3171094_3173254_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3173374_3174094_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3174090_3175041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3175181_3176399_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3176392_3177004_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3177637_3178615_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3178758_3179505_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3179526_3179973_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3180760_3182992_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3183014_3183815_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3184096_3185329_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3185439_3186429_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3186459_3187848_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3189446_3190430_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3190626_3191643_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	3256101	3329263	4107604	transposase	Klosneuvirus(16.67%)	56	NA	NA
WP_041337087.1|3256101_3257052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3257048_3258068_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3258077_3260786_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3260933_3261590_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010931070.1|3261688_3262639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3262786_3263680_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3263879_3265574_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3265608_3266535_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3266603_3267701_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3267719_3268583_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3268594_3269377_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3269373_3270492_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3270488_3272021_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3272061_3273069_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3273213_3273936_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3273951_3274974_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3275290_3276025_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3276109_3277855_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3277851_3278604_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3278648_3279605_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3279693_3280260_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3280267_3281128_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3281157_3281886_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3281917_3282601_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3283438_3284353_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3284417_3285326_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3285416_3286841_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3286842_3288165_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3288161_3290300_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3290377_3295498_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_010929994.1|3295976_3296534_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3296549_3298031_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3300201_3301539_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3301573_3303571_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3303588_3305637_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3305767_3306634_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3306902_3307868_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3307982_3309131_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3309555_3309867_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3309900_3310161_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3310310_3311444_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3311514_3312651_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3312816_3313611_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3313673_3314117_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3314232_3315183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3315284_3315713_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3315785_3317981_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3318202_3319153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3319112_3319637_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3319768_3320740_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3320859_3323304_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3323319_3323910_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3324153_3325104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3325261_3326527_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3326560_3327658_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3328312_3329263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	3340550	3440663	4107604	tRNA,terminase,protease,transposase,tail	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3340550_3341501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3342232_3342610_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3342594_3343296_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3343439_3344132_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3344131_3345235_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3345344_3347717_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3347713_3349273_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3349297_3350095_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3350126_3351272_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3351376_3352819_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3352821_3354051_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3356188_3357139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3358268_3358826_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3358801_3359152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3359320_3360115_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3360111_3361161_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3361160_3361850_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3361936_3362434_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3362465_3363782_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3363798_3364773_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3364809_3365268_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3365267_3365948_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3365950_3366379_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3366431_3368162_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3368227_3368800_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3368780_3369467_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3369822_3370494_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3370822_3371044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3371043_3371325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3371321_3371837_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3371836_3372388_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3372366_3372609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3372613_3373426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3373425_3373689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3373729_3373927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3373907_3374324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3374328_3378285_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3378277_3378667_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3378663_3379197_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3379264_3379624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3379633_3382246_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3382271_3382562_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3382579_3382909_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3382918_3383437_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3383691_3384192_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3384199_3384622_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3384618_3385017_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3385013_3385409_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3385408_3385609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3385610_3386093_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3386155_3386407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3387081_3388032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3388460_3389063_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3389185_3389428_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3389433_3390489_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3390517_3391936_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3391938_3393216_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3393202_3393688_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3394327_3395278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3395295_3395517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3395534_3396224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3396216_3396468_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3397022_3397634_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3397705_3397912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3398163_3399114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3399212_3400286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3400453_3401248_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3401287_3401812_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3401804_3403547_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3403756_3404515_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3404517_3405225_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3405241_3406123_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3406133_3406892_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3406860_3407616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3407685_3409104_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3409125_3409776_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3409909_3410245_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3410333_3411284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3411360_3413181_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3413185_3414259_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3414381_3415350_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3415423_3416335_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3416353_3416926_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3417006_3417555_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3417554_3419144_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3419213_3419453_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3419493_3420519_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3420584_3421766_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3421862_3422315_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3422324_3423665_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3423981_3425019_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3425400_3425760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3425843_3426785_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3426859_3427810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3428103_3429198_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3429279_3430161_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3430182_3431022_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3431097_3432615_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3432711_3433812_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3433828_3434251_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3434273_3434486_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3434532_3435453_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3435635_3436385_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3436387_3436717_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3436923_3438357_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3438368_3438752_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3438813_3439614_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3439712_3440663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	3600461	3647310	4107604	transposase	Lake_Baikal_phage(25.0%)	39	NA	NA
WP_005012067.1|3600461_3601412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3601528_3602596_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602671_3605800_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3606307_3607273_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3607275_3607947_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3608103_3609063_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3609070_3609733_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609729_3610680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3610778_3611729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3611850_3613104_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3613081_3614044_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3614175_3614670_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3614669_3615902_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3616647_3616929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3616915_3617902_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3618045_3618450_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3618591_3621978_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3622008_3623472_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3623492_3625109_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3625194_3625854_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3625883_3626324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3626834_3627038_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3627213_3628119_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3628217_3629168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3629266_3630217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3631998_3633192_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3633257_3634286_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3634312_3635485_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3635610_3636588_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3636598_3637570_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3637636_3638422_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3638414_3639647_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3639842_3640598_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3640708_3641227_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3643015_3644416_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3644515_3644860_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3644948_3645419_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3645829_3646228_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3646359_3647310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	3746297	3800492	4107604	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
WP_005013747.1|3746297_3747248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3747370_3748099_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3748195_3749374_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3749370_3750204_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3750240_3750981_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3751100_3752276_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3752272_3753226_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3753239_3753641_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3753633_3754239_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3754326_3754491_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3754607_3755456_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3755452_3756106_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3756122_3757406_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3757645_3759271_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3759364_3759766_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3759790_3760225_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3760226_3761876_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3761916_3763086_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3763088_3763952_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3767315_3768020_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3768013_3768808_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3768804_3769770_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3769773_3770694_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3770790_3771954_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3772176_3773067_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3773070_3773574_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3773616_3774615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3774611_3775562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3775650_3775938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3776129_3777080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3777139_3777700_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3779202_3780084_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3780197_3781400_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3781528_3783388_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3783465_3784275_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3784345_3785347_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3785378_3786239_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3786438_3787443_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3787439_3789026_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3789034_3789961_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3789983_3790610_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3790708_3791659_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3791655_3792792_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3792845_3793622_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3793646_3794105_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3794244_3794886_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3794950_3796333_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3796352_3797207_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3797365_3797977_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3797986_3798436_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3798954_3799095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3799102_3799264_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_173651708.1|3799377_3799524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3799541_3800492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	3811108	3871997	4107604	protease,transposase,tRNA	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_005012067.1|3811108_3812059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3812789_3813770_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3813783_3814908_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3814915_3816670_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3816776_3817676_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3817740_3818724_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3818859_3819840_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3819856_3821248_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3821399_3821936_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3821866_3823252_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3823394_3824033_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3824119_3826009_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3826005_3826947_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3827052_3828102_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3828354_3829056_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3829052_3829751_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3829751_3831107_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3831103_3831595_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3831613_3832570_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3833980_3836083_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3836253_3837297_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3837340_3838084_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3839105_3839516_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3840465_3841263_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3841361_3842312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3842308_3843259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3843345_3844296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3844410_3845412_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3845502_3846069_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3846387_3848301_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3848342_3849773_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3849885_3851298_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3851314_3852010_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3852228_3853179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3853203_3854103_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3854257_3854806_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3854844_3855564_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3855635_3858578_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3859171_3861967_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3862424_3863357_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3863468_3864818_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3864849_3865575_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3865625_3866477_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3866606_3867293_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3867292_3867937_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3867993_3868269_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3868294_3868591_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3868636_3869416_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3869421_3870462_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3870566_3870890_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3871046_3871997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011748	Bordetella pertussis strain I968 chromosome, complete genome	4107604	4029775	4083207	4107604	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4029775_4030726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030895_4032122_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032321_4033188_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033180_4034143_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034243_4035194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035292_4036243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036341_4037292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037288_4038782_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038778_4041886_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041882_4044951_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044947_4046198_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046378_4047140_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4047172_4047823_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047825_4048665_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048905_4049649_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049731_4050079_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050176_4051019_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051063_4051951_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051977_4052166_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052263_4053721_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053707_4055234_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055252_4055720_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055719_4056742_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056862_4057582_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057657_4058758_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058759_4059950_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060069_4061086_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061404_4062076_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062072_4062981_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063192_4063840_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067691_4068768_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068778_4069588_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069677_4070451_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070451_4070616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070633_4071584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071472_4072495_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072484_4073639_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073678_4075091_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075215_4076082_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4076083_4076908_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076904_4077666_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077746_4078433_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078606_4079614_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079610_4080390_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080447_4081710_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082256_4083207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
