The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	27282	70036	4111653	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	77634	136108	4111653	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	164893	225404	4111653	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	233336	286926	4111653	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999816.1|265573_266911_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278370_278532_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278539_278680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279198_279648_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279657_280269_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280427_281282_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281301_282684_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282748_283390_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283529_283988_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284012_284789_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284842_285979_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285975_286926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	555312	614612	4111653	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555312_556263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557586_558363_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558397_560170_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560171_561074_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561198_561558_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561589_562552_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562650_563601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563613_564549_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564608_565448_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565444_566614_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566610_567900_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567942_568317_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568422_569160_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569167_569872_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570135_571656_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571711_572275_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572293_573325_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573321_574110_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574130_574289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574285_575275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577031_577982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579204_580107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580108_580963_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581009_582119_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582129_582648_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582677_583310_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583381_584041_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584037_585258_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585526_586399_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586554_587292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587294_588926_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589021_590011_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590007_590718_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590813_591830_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592101_592728_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592783_593911_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593916_599634_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600201_601146_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601334_602270_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602387_603959_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604038_605247_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605744_606662_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609022_609244_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609574_610591_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610675_610927_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610930_611746_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611858_612737_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612848_614612_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	620767	674508	4111653	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620767_621718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621813_622785_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622789_623470_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623607_624000_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624107_625124_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625363_626149_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626243_627653_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627663_628464_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628484_629255_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629297_629765_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_062826579.1|629761_630712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632660_633539_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634465_637444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637797_638748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638744_639833_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639868_640732_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641871_642261_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642264_643047_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643080_643866_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644141_645281_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645277_646069_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646065_646815_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646811_647684_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647683_648685_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648681_649845_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649870_650554_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650507_651842_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651834_652929_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653695_654646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656586_657846_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657842_659381_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659377_660574_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660570_661947_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661958_662975_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663043_664279_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664379_665174_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665543_665951_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666368_666641_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666810_667035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667222_668077_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668177_668480_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668524_669142_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669158_669467_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669463_671179_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671181_671799_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671899_672484_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672508_673153_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673557_674508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	723446	764447	4111653	protease,transposase,tRNA	Mycobacterium_phage(50.0%)	29	NA	NA
WP_010931308.1|723446_724043_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724039_724822_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724894_725986_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931304.1|727736_728783_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728930_732050_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732051_735003_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_005012067.1|735567_736518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|737462_738413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738429_738924_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738927_739185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739728_740640_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740721_741006_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741789_742740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247178.1|743158_745723_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745767_747621_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|747953_749525_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|750793_750949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|750966_751917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|752002_752743_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752969_753917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755304_756255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|756272_756485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|756448_757264_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757396_758836_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758849_759191_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759245_760901_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761052_762063_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762195_762969_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763496_764447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	774374	821992	4111653	holin,transposase,protease,tRNA	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|774374_775325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775463_776216_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|776454_778179_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|778198_779458_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779472_780567_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|780563_782690_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|782702_783383_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783660_785034_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785035_786055_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786118_787090_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787154_788105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788203_789046_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789045_789381_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789451_790870_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791149_792190_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792269_792521_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792631_793795_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794078_794933_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794929_795820_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795862_796774_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796800_797493_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797507_798488_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798500_800642_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800690_801659_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801649_802318_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802278_803214_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803210_804107_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804103_804826_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804816_804981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805154_805658_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805934_807050_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807192_807657_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807804_808344_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808365_809700_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809713_810019_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810443_811025_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811106_812057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812155_813106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813546_814452_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|814507_816112_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816368_817874_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817888_818353_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818642_819593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|819610_819799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|819755_820286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820285_820597_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821041_821992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	1006208	1100245	4111653	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1006208_1007159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007261_1007924_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008018_1008189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008541_1009543_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009545_1010742_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010762_1011566_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011646_1011943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011973_1012537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012577_1013435_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013442_1014192_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014213_1015086_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015114_1015894_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015927_1016725_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019379_1019772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019765_1020626_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020629_1021592_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022368_1023058_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023918_1024869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025218_1026088_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026158_1026854_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026843_1027353_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027349_1028570_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028517_1029420_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030306_1031593_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031631_1033005_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033043_1033745_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034043_1035033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035133_1035595_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035610_1036159_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036300_1037776_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037881_1038973_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038976_1039759_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039768_1040557_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041682_1042117_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042113_1043124_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043167_1044094_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044380_1044749_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1044801_1044948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1044965_1045916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045960_1048387_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048435_1049128_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049200_1050400_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050417_1051323_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051438_1052368_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052393_1053740_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053767_1054517_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054530_1055313_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055505_1056456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056517_1057627_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058139_1058976_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059045_1060011_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060007_1060958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1060975_1061146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061343_1061886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062921_1063872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064113_1064482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064527_1065652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066786_1067539_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067630_1068251_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068354_1069305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069301_1071410_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071554_1072214_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072245_1072710_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072985_1073171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073222_1073975_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073981_1075244_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075285_1076524_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077601_1078729_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078739_1079567_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079553_1080420_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081786_1082191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082282_1083233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1083250_1083415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1083602_1084514_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084528_1085239_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085235_1086480_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086481_1086916_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086944_1087250_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087348_1088299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088355_1089510_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089584_1090535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091066_1091864_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091911_1092565_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092521_1093610_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093774_1096000_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098277_1099174_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1099127_1099277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1099294_1100245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	1130631	1201602	4111653	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1130631_1131582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131638_1132751_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135134_1136085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136675_1137452_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137569_1137833_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137933_1138938_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139138_1140740_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140765_1141524_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141615_1142272_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142362_1143127_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143136_1143325_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143380_1144424_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144420_1144834_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144830_1145451_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145731_1146682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146849_1148241_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148313_1148892_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149008_1150406_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150521_1151727_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151826_1152345_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152439_1152685_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152912_1153227_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153316_1158506_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158502_1160671_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160726_1163042_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163046_1164366_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164384_1166058_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166062_1166731_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166887_1170709_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1170863_1171022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1171039_1171990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172011_1173157_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173305_1174235_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174231_1175320_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175316_1176120_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176116_1176848_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176905_1178195_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178291_1178894_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183447_1183786_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184493_1184760_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186466_1187417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187413_1188745_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190005_1192006_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191998_1192640_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192636_1193044_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193040_1193841_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193915_1194620_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194651_1195446_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195442_1196393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196491_1197442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197540_1197975_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198057_1200394_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200585_1201602_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	1242673	1324808	4111653	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_010929591.1|1242673_1243624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1243711_1245364_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1245374_1246163_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1246162_1246633_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1246707_1248021_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1248074_1248680_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1248996_1249947_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249943_1250894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251154_1252183_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252262_1253561_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253557_1254139_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254451_1258498_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1258738_1266400_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266396_1267347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268486_1268960_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269099_1269720_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1269855_1270656_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270710_1271802_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271823_1272267_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272295_1272928_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273038_1273455_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273447_1274140_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274246_1274621_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274697_1275507_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275602_1276547_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276585_1277557_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277647_1278085_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278143_1279025_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280028_1280889_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280921_1282304_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282300_1283320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283692_1284187_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284194_1284935_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285015_1286620_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286659_1287448_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288650_1289739_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290619_1291432_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291444_1291753_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291870_1293601_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293602_1294748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810957.1|1295666_1296134_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296269_1297652_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297648_1298773_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298769_1301406_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301821_1302772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306518_1307130_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307352_1308813_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308909_1310502_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310855_1311113_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311114_1312455_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312550_1313240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313252_1314683_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316407_1317229_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317239_1318811_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318839_1319817_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319843_1320647_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320643_1321438_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321445_1322681_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322673_1323108_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323857_1324808_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	1328919	1370637	4111653	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
WP_005013747.1|1328919_1329870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329910_1330981_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1331003_1331882_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332053_1333025_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333187_1334030_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334191_1334872_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1334865_1336035_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1336031_1337063_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1337106_1338348_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338382_1339915_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339995_1340619_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340649_1341261_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341296_1341767_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342198_1343203_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343239_1344754_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344757_1345717_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345745_1346549_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346550_1348185_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348268_1349330_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349528_1349798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349801_1350326_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1350741_1351692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1351688_1352723_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352831_1353470_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353764_1353992_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354114_1354828_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1355072_1356023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1356126_1356408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356522_1357971_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_076879566.1|1358081_1359032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1359130_1360081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1360077_1360527_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|1360721_1361672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1362007_1362205_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1362220_1362580_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1362654_1363677_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1363689_1366107_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1366112_1366454_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1366512_1366923_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1367422_1368514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1368697_1369294_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1369393_1369576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1369686_1370637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	1745314	1793329	4111653	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1745314_1746265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1746363_1748964_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1749070_1750075_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1750183_1751524_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1751564_1752593_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1752788_1753334_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1753330_1753891_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1753989_1754940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1754977_1755565_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1755582_1755966_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1757325_1758618_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1758752_1759793_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1759890_1760907_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1761174_1761822_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1761947_1762706_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1762690_1763470_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1763487_1764372_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1764368_1765148_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1765252_1765852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1766140_1766893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1767011_1768412_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1768435_1768834_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1769009_1769210_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1769348_1770077_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1770210_1771626_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1771629_1772493_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1772505_1773255_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1773437_1775453_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1775434_1776103_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1776877_1777828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1777926_1778877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1779025_1779364_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1779421_1779583_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1779614_1779815_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1780080_1782654_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1782724_1785274_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1787824_1788313_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1788404_1789556_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1789609_1790431_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1790469_1791699_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1791827_1792268_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1792378_1793329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	1854891	1914161	4111653	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1854891_1855842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1855966_1856776_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1856976_1857927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1859200_1860418_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1861474_1862377_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1862453_1863326_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1863456_1863825_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1863882_1864929_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1865124_1866381_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1866385_1867723_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1867872_1868829_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1868931_1869864_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1869979_1870300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1870292_1870652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1870699_1872274_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1872326_1873271_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1873288_1874119_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1874111_1875746_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1875742_1877098_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1878004_1879582_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1879585_1880860_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1880957_1881332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1883047_1884181_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1884218_1884824_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1884820_1885639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1885710_1888335_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1888321_1888576_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1888642_1889224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1889527_1889788_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1889953_1890577_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1890576_1891350_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1891346_1892555_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1892580_1893054_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1893127_1894078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1894176_1895127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1895225_1896575_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1897340_1898096_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1898188_1901071_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1901393_1901819_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1901846_1902995_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1902991_1903498_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1903504_1904800_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1904858_1906145_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1906146_1906785_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_077069010.1|1906787_1907948_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1907974_1909330_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1909333_1910404_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1910542_1910779_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1910866_1911973_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1911938_1913243_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1913261_1914161_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	1924401	1981898	4111653	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_005013747.1|1924401_1925352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1925551_1926637_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1926652_1927414_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1927410_1928370_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1928432_1928933_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1928965_1929709_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1929804_1930044_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1930057_1930210_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1930295_1931786_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1931877_1932816_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1932812_1932989_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1932991_1933654_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1935275_1935419_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1935415_1936390_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1936284_1936539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1936556_1937507_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1937503_1938778_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1938881_1940075_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1940071_1940725_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1940721_1942158_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1942145_1942505_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1943319_1943460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1943477_1944428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1945473_1947339_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1947596_1949117_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1949204_1949855_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1950803_1952099_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1952120_1953005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1953103_1953979_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1953968_1954325_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1954455_1955430_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1955559_1955739_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1955836_1956361_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1956371_1957208_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1957320_1957692_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1957688_1958240_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1958255_1959947_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1959995_1960676_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1960923_1961388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1961557_1962487_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1962499_1963147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1963220_1965038_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1965121_1966072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1966724_1967675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1967693_1968041_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1968069_1969509_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1969527_1969923_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1970097_1970706_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|1970718_1971537_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1971488_1972463_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1972491_1973553_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1973549_1975766_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1975779_1976238_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1976395_1976740_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1976896_1977802_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1977888_1978902_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|1980881_1981898_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	1997454	2061823	4111653	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1997454_1998405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1998626_1999577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1999675_2000641_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2000778_2001678_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2004272_2005760_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2005770_2006967_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2007039_2008359_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2008355_2009231_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2009261_2010410_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2010427_2010742_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2010763_2011486_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2011485_2012304_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2012308_2012836_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2012841_2014098_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2014456_2015596_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2015673_2016546_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2017416_2018367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2018326_2018962_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2019321_2020644_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2020962_2021784_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2023208_2023781_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2023820_2025650_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2025612_2026671_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2026708_2027170_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2027254_2028001_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2029491_2032722_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2032788_2034120_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2034372_2034747_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2034849_2036028_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2036038_2036629_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2036739_2037546_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2037571_2038366_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2039366_2040341_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2040499_2041012_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2041168_2042140_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2043884_2044691_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2044687_2045989_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2045939_2046704_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2046817_2047588_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2047672_2048860_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2048932_2049307_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2049407_2050670_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2050666_2051524_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2051696_2052698_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2053149_2054100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2055615_2056815_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2057183_2057420_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2057483_2057651_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2057764_2059570_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2059823_2060774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2060872_2061823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	2248291	2309639	4111653	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2248291_2249242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2249358_2250078_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2250250_2251237_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2251237_2251720_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2251723_2253007_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2253003_2253942_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2253938_2255648_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2255657_2256905_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2258515_2259805_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2260942_2261701_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2262377_2263121_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2263195_2263936_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2264131_2264968_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2265018_2265789_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2265838_2266891_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2266887_2267514_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2267510_2268545_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2268723_2269740_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2269838_2270789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2273529_2274819_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2274937_2275375_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2275418_2276627_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2276773_2277238_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2277261_2278212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2279196_2279970_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2279966_2280965_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2281049_2281826_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2281981_2283586_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2283966_2285091_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2285217_2285841_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2285837_2287739_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2287787_2288582_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2288594_2289596_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2289592_2290099_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2290091_2290940_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2291037_2291580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2291623_2292574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2292729_2293056_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2293052_2293337_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2293333_2293813_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2293809_2295438_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2295434_2295779_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2295778_2298712_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2299870_2300821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2300919_2301216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2301322_2302240_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2302244_2302958_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2302971_2303943_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2305662_2306043_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2306046_2307234_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2307657_2308395_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2308688_2309639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	2330430	2401584	4111653	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2330430_2331381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2331933_2333559_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2333608_2334643_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2334645_2335992_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2335988_2337503_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2337493_2338504_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2338977_2339919_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2339927_2340896_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2342435_2343404_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2343581_2344571_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2344617_2345376_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2345565_2346303_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2346401_2347352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2347536_2348319_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2348312_2349014_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2349253_2349856_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2351182_2352133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2352129_2353686_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2353678_2354452_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2354510_2355461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2355542_2356718_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2356731_2358789_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2358785_2359811_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2359822_2361112_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2361134_2362232_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2362228_2363119_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2363115_2365200_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2365231_2366401_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2366442_2367183_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2367182_2367953_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2368277_2368445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2368808_2369594_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2369620_2371705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2371872_2373828_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2374151_2374652_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2374750_2376277_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2376414_2377302_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2377316_2378270_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2378321_2380412_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2380427_2380814_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2383507_2384311_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2385604_2386507_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2386571_2387348_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2387669_2388719_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2388842_2390513_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2390517_2391312_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2391410_2392361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2392380_2393286_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2393363_2394062_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2394221_2395166_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2395175_2396663_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2396662_2397730_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2397793_2399206_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2399391_2400612_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2400633_2401584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	2497413	2556194	4111653	transposase,tRNA	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2497413_2499363_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2499750_2500527_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2500532_2500925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2501346_2502297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2502293_2503391_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2503422_2504373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2506154_2507396_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2507407_2508181_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2508207_2509158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509637_2510294_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510308_2511976_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511978_2512608_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512819_2513914_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514058_2514871_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2514874_2516578_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2516628_2517759_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517945_2519022_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519103_2519754_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519768_2521172_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521455_2522274_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2522270_2522975_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523874_2524990_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2525023_2525398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525420_2526578_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526590_2526824_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527458_2530428_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530442_2530652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530803_2531433_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2531429_2533520_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533543_2534224_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534220_2534781_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534787_2535885_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536037_2536631_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536627_2537920_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537933_2538476_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538485_2539322_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539355_2540417_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540458_2541511_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541526_2541829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541970_2542921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2542938_2543103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2543099_2544794_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544790_2545876_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545923_2546823_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546833_2547478_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548499_2551742_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551752_2552907_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553133_2554096_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554194_2555145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555243_2556194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	2609780	2676280	4111653	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2609780_2610731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2611100_2611673_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2611675_2612686_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2612678_2613179_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2613189_2613531_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2613542_2614334_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2614350_2614620_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2614642_2615431_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2615477_2616494_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2616710_2618153_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2618331_2619951_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2620071_2621892_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2621970_2623503_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2623536_2625183_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2625252_2626275_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2626292_2627426_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2627428_2628118_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2628117_2628903_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2628946_2629711_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2629749_2631171_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2631236_2631941_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2631988_2632408_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2632420_2632828_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2633011_2633722_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2633848_2634139_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2634156_2634639_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2639144_2640299_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010929632.1|2640604_2641621_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2641867_2642656_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2642722_2643403_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2643399_2644170_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2644268_2645219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2645274_2646192_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2646202_2647381_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2647400_2648396_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2649984_2650593_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2650580_2651621_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2651638_2652601_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2652597_2653791_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2653787_2654585_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2654610_2655597_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2655615_2657655_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2657856_2658537_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2658550_2659462_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2659458_2660037_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2660175_2661081_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2661088_2664508_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2664495_2667096_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2668051_2668684_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2669077_2669836_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2669832_2671035_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2671222_2672173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2673080_2674226_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2674212_2674968_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2675084_2675264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2675329_2676280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	2874619	2947944	4111653	protease,transposase,tRNA	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2874619_2875975_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2877453_2878176_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2878230_2879214_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2879343_2880294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2880290_2881193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2881280_2882039_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2882051_2883143_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2883240_2884668_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2884897_2886112_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2886157_2889028_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2891438_2891927_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2892052_2894749_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2894903_2897186_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2897359_2897983_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2898081_2899032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2899078_2899633_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2899700_2900546_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2900615_2901584_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2901583_2902447_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2905279_2909206_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2909941_2913172_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2913453_2914281_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2914314_2915010_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2915002_2916283_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2916292_2917270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2917251_2918952_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2919054_2920158_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2920188_2920944_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2920950_2922471_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2922513_2922816_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2922812_2923445_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2923523_2925389_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2925385_2926180_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2926208_2927324_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2928228_2929107_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2929106_2929931_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2930098_2931049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2931261_2934111_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2934092_2934821_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934961_2936425_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2936421_2936793_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2936810_2938124_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2938160_2938619_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2938573_2938714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2938731_2939682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|2940262_2940970_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|2941328_2942315_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|2942454_2943468_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|2943464_2944415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2944566_2945169_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945187_2945820_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2945864_2946116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2946057_2947944_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	2959669	3010331	4111653	holin,transposase,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2959669_2960620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960646_2961111_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962317_2964606_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964722_2965595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965637_2966792_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966826_2967657_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967740_2969285_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969327_2969687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969688_2970102_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970142_2970460_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970544_2971261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971524_2972946_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|2974250_2975201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2977141_2978158_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2978493_2979135_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2979225_2980662_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2980819_2981893_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2981889_2983026_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2983170_2983515_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2983581_2985462_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2985511_2986447_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_023853536.1|2986779_2987796_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2988733_2990161_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2990157_2991180_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2991169_2991643_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2991783_2992671_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2992667_2994311_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2994307_2995357_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2996145_2997162_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2997261_2997894_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2997902_2998292_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2998344_2999397_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3000260_3001967_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3002040_3002541_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3002555_3004613_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3004639_3004933_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3005034_3005982_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3005994_3006870_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3006990_3007551_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3007585_3007909_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3008344_3009082_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3009380_3010331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	3031282	3103776	4111653	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3031282_3032233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3032275_3033451_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3033672_3035463_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3035475_3037137_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3037149_3039855_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3040147_3041902_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3041898_3042525_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3042521_3043373_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3043448_3045563_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3045749_3046364_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3046509_3046761_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3046830_3048213_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3048209_3051389_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3052196_3053114_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3053165_3053897_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3053956_3054529_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3056037_3057054_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3057191_3058241_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3058345_3059296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3059391_3060117_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3060327_3060708_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3061013_3061886_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3061893_3062274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3062427_3063702_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3065189_3066098_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3066895_3067960_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3069796_3070798_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3071020_3071662_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3071744_3073571_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3073814_3074744_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3074743_3075493_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3075564_3076479_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3076498_3077644_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3077704_3078616_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3078696_3079647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3079745_3080330_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3080364_3081354_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3081350_3082292_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3082288_3083509_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3083551_3083866_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3084057_3084417_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3084418_3086134_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3086321_3086993_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3087007_3088336_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3088332_3089232_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3089318_3090404_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3090396_3091530_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3091529_3094211_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3094581_3095163_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3095288_3096014_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3096010_3096688_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3096903_3098085_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3098857_3099040_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3099069_3100020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3100149_3100542_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3100818_3101730_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3101854_3102829_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3102825_3103776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	3117283	3170801	4111653	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3117283_3118234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3118346_3118598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3119103_3120222_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3120341_3120554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3120713_3120935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3120987_3121938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3123114_3124485_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3124517_3125309_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3125321_3126377_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3126402_3127278_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3127383_3127632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3127666_3129121_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3129117_3129639_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3129667_3131020_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3131243_3134132_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3136276_3137578_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3137592_3138309_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3138590_3139271_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3139282_3139450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3139558_3139705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3139798_3140458_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3140856_3142689_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3142685_3143636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3144799_3146515_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3146525_3147017_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3147089_3148106_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3148273_3149053_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3149071_3149599_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3149892_3150162_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3150252_3152412_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3152532_3153252_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3153248_3154199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3154339_3155557_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3155550_3156162_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3156795_3157773_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3157916_3158663_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3158684_3159131_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3159918_3162150_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3162172_3162973_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3163254_3164487_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3164597_3165587_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3165617_3167006_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3168604_3169588_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3169784_3170801_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	3235259	3305311	4111653	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3235259_3236210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3236206_3237226_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3237235_3239944_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3240091_3240748_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3240846_3241797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3241944_3242838_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3243037_3244732_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3244766_3245693_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3245761_3246859_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3246877_3247741_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3247752_3248535_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3248531_3249650_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3249646_3251179_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3251219_3252227_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3252371_3253094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3253109_3254132_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3254448_3255183_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3255267_3257013_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3257009_3257762_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3257806_3258763_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3258851_3259418_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3259425_3260286_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3260315_3261044_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3261075_3261759_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3262596_3263511_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3263575_3264484_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3264574_3265999_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3266000_3267323_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3267319_3269458_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3269535_3274656_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3274756_3275065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3275134_3275692_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3275707_3277189_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3279359_3280697_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3280731_3282729_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3282746_3284795_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3284925_3285792_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3286060_3287026_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3287140_3288289_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3288713_3289025_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3289058_3289319_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3289468_3290602_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3290672_3291809_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3291974_3292769_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3292831_3293275_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3293390_3294341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3294442_3294871_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3294943_3297139_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3297360_3298311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3298409_3299360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3299319_3299844_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3299975_3300947_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3301066_3303511_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3303526_3304117_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3304360_3305311_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	3308519	3413871	4111653	transposase,protease,tail,tRNA,terminase	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
WP_005013747.1|3308519_3309470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3309470_3310040_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3310107_3310923_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3311089_3312709_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3312787_3313729_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3313728_3314613_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3314616_3316269_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3316308_3317706_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3317747_3319127_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3319166_3319385_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3319725_3320598_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3320757_3321708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3321806_3322757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3323488_3323866_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3323850_3324552_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3324695_3325388_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3325387_3326491_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3326600_3328973_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3328969_3330529_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3330553_3331351_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3331382_3332528_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3332632_3334075_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3334077_3335307_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3337444_3338395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3339524_3340082_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3340057_3340408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3340576_3341371_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3341367_3342417_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3342416_3343106_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3343192_3343690_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3343721_3345038_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3345054_3346029_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3346065_3346524_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3346523_3347204_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3347206_3347635_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3347687_3349418_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3349483_3350056_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3350036_3350723_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3351078_3351750_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3352078_3352300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3352299_3352581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3352577_3353093_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3353092_3353644_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3353622_3353865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3353869_3354682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3354681_3354945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3354985_3355183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3355163_3355580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3355584_3359541_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3359533_3359923_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3359919_3360453_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3360520_3360880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3360889_3363502_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3363527_3363818_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3363835_3364165_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3364174_3364693_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3364947_3365448_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3365455_3365878_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3365874_3366273_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3366269_3366665_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3366664_3366865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3366866_3367349_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3367411_3367663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3368337_3369288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3369716_3370319_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3370441_3370684_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3370689_3371745_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3371773_3373192_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3373194_3374472_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3374458_3374944_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3375583_3376534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3376551_3376773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3376790_3377480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3377472_3377724_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3378278_3378890_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3378961_3379168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3379419_3380370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3380468_3381542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3381709_3382504_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3382543_3383068_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3383060_3384803_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3385012_3385771_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3385773_3386481_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3386497_3387379_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3387389_3388148_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3388116_3388872_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3388941_3390360_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3390381_3391032_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3391165_3391501_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3391589_3392540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3392616_3394437_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3394441_3395515_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3395637_3396606_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3396679_3397591_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3397609_3398182_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3398262_3398811_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3398810_3400400_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3400469_3400709_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3400749_3401775_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3401840_3403022_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3403118_3403571_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3403580_3404921_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3405237_3406275_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3406656_3407016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3407099_3408041_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3408115_3409066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3409359_3410454_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3410535_3411417_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3411438_3412278_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3412353_3413871_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 29
NZ_CP011744	Bordetella pertussis strain I755 chromosome, complete genome	4111653	4032775	4075633	4111653	transposase	Planktothrix_phage(50.0%)	36	NA	NA
WP_010931661.1|4032775_4033726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033895_4035122_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035321_4036188_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036180_4037143_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037243_4038194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038292_4039243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4039341_4040292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4040390_4041341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4041337_4042831_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4042827_4045935_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4045931_4049000_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4048996_4050247_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4050427_4051189_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4051221_4051872_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4051874_4052714_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4052954_4053698_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4053780_4054128_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4054225_4055068_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4055112_4056000_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4056026_4056215_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4056312_4057770_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4057756_4059283_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4059301_4059769_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4059768_4060791_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4060911_4061631_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4061706_4062807_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4062808_4063999_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4064118_4065135_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4065453_4066125_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4066121_4067030_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4067241_4067889_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4071740_4072817_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4072827_4073637_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4073726_4074500_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4074500_4074665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995294.1|4074682_4075633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
