The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	27282	70036	4109174	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	77634	136108	4109174	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	164894	225406	4109174	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194407_195358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195460_196096_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196092_196986_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197380_198481_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198562_198937_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198996_201861_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202005_202746_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202815_204027_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204055_205024_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205637_206588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206744_207068_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207172_208213_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208218_208998_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209043_209340_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209365_209641_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209697_210342_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210341_211028_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211157_212009_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212059_212785_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212816_214166_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214277_215210_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215667_218463_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219056_221999_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222070_222790_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222828_223377_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223531_224431_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224455_225406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	233338	286926	4109174	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233338_234289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234375_235326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235322_236273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236371_237169_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238118_238529_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239550_240294_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240337_241381_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241551_243654_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245064_246021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246039_246531_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246527_247883_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247883_248582_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248578_249280_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249532_250582_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250687_251629_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251625_253515_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253601_254240_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254382_255768_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255698_256235_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256386_257778_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257794_258775_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258910_259894_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259958_260858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260964_262719_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262726_263851_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263864_264845_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265575_266526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267085_267631_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267714_269334_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269349_270504_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270517_270643_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270639_272391_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272387_274067_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274129_274678_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275820_276099_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277142_278093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278370_278532_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278539_278680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279198_279648_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279657_280269_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280427_281282_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281301_282684_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282748_283390_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283529_283988_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284012_284789_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284842_285979_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285975_286926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	390859	448368	4109174	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390859_391810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391946_392864_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392860_393109_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393105_394311_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394383_395379_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395401_396622_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396618_397263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398993_399803_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400107_401061_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401159_402143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402069_402771_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402819_403590_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403586_404765_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404932_406639_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406635_407532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407572_409162_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409211_410204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410272_410872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411332_412313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412388_413339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413427_414342_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414338_414998_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415087_416011_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416016_416472_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416468_417572_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417527_417800_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417759_419379_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419375_420434_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420563_421058_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421150_422128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422323_423529_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423525_425037_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425052_426366_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426556_426736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427145_427880_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430324_431275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431406_431805_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432215_432686_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432774_433119_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433218_434619_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436407_436926_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437036_437792_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437987_439220_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439212_439998_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440064_441036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441046_442024_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442149_443322_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443348_444377_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444442_445636_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447417_448368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	589373	650564	4109174	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589373_590324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590820_591690_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591686_592508_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592707_593199_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593217_594291_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594337_595441_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595516_596137_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596157_596667_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596721_596973_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597036_598170_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598177_598564_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598560_601080_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601508_601847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601843_602350_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602411_603212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603322_604264_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604357_605893_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607572_609423_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609426_610260_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610259_611201_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611452_612424_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612565_614854_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615160_616069_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616123_617089_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617163_618825_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618896_619607_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619755_620706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621404_621788_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621845_622448_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622465_622867_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|623000_623894_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623890_624472_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625266_626001_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626041_627091_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627238_627817_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628203_629181_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629274_633669_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633869_634718_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634876_635689_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635744_636695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636793_637594_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637655_638039_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638050_639484_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639690_640020_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640022_640772_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640954_641875_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641921_642134_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642156_642579_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642595_643696_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643792_645310_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645385_646225_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646246_647128_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647209_648304_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648597_649548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649622_650564_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	655888	705915	4109174	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	55	NA	NA
WP_023995141.1|655888_656914_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656954_657194_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657263_658853_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658852_659401_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659481_660054_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660072_660984_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661057_662026_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662148_663222_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663226_665047_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665123_666074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666162_666498_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666631_667282_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667303_668722_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668791_669547_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669515_670274_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670284_671166_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671182_671890_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671892_672651_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672860_674603_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674595_675120_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675159_675954_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676121_677195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677293_678244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678495_678702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678773_679385_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679939_680191_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680183_680873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681129_682080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|682331_682538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|682609_683221_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|683775_684027_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|684019_684709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|684965_685916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|686555_687041_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|687027_688305_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|688307_689726_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|689754_690810_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|690815_691058_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|691180_691783_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|692211_693162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|693836_694088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|694150_694633_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|694634_694835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|694834_695230_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|695226_695625_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|695621_696044_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|696051_696552_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|696806_697325_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|697334_697664_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|697681_697972_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697997_700610_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|700619_700979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|701046_701580_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|701576_701966_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701958_705915_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	712081	766011	4109174	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|712081_713812_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713864_714293_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|714295_714976_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714975_715434_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|715470_716445_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|716461_717778_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717809_718307_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|718393_719083_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|719082_720132_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|720128_720923_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|721091_721442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|721417_721975_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|723104_724055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|726192_727422_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|727424_728867_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728971_730117_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|730148_730946_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730970_732530_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|732526_734899_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|735008_736112_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|736111_736804_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736947_737649_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|737633_738011_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738742_739693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739852_740725_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|741065_741284_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|741323_742703_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742744_744142_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|744181_745834_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745837_746722_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746721_747663_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747741_749361_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|749527_750343_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|750410_750980_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750980_751931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|752585_753683_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753716_754982_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|755139_756090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|756333_756924_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756939_759384_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|759503_760475_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|760606_761131_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|761090_762041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|762262_764458_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|764530_764959_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|765060_766011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	817604	889617	4109174	transposase,holin	Acinetobacter_phage(20.0%)	60	NA	NA
WP_010931070.1|817604_818555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|818653_819310_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|819457_822166_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|822175_823195_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|823191_824142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|824240_824729_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|824725_825409_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|825438_828894_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|828929_829790_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|829918_830836_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|830973_831954_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|832013_833804_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|833800_834577_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|834586_835105_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|835217_837488_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|837699_839931_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|840231_840561_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|840577_842062_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|842072_843575_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|843571_845584_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|845601_845910_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|845906_846554_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|846571_847060_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|847081_848155_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|848154_850482_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|850497_851865_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|851861_852356_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|852401_853658_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|853660_854284_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|854358_854835_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|854871_855231_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|855419_856577_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|856889_857840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|857857_858412_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|858413_858848_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|858844_859279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|859262_860066_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|860082_860898_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|860894_861710_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|861856_862558_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|862585_864544_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|864626_865577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|865797_866466_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|866589_867696_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|867708_870822_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|870818_872312_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|872326_872998_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|873041_873536_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|873676_874324_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|874427_876476_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|876472_878485_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|878510_879845_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|879953_880946_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|881012_883097_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|883121_884093_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|884221_885253_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|885256_886408_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|886578_887502_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|887579_888404_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|888600_889617_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	897251	960332	4109174	transposase,holin	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|897251_899483_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|900270_900717_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900738_901485_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|901628_902606_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|903239_903851_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903844_905062_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|905202_906153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|906149_906869_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906989_909149_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|909239_909509_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|909802_910330_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|910348_911128_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|911295_912312_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|912384_912876_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912886_914602_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915765_916716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916712_918545_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918943_919603_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|919696_919843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|919951_920119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|920130_920811_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|921092_921809_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921823_923125_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|925269_928158_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|928381_929734_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929762_930284_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|930280_931735_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931769_932018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|932123_932999_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|933024_934080_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|934092_934884_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934916_936287_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|937463_938414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|938466_938688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938847_939060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|939179_940298_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|940803_941055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|941167_942118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|942114_942498_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|942552_944367_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|944516_945344_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|945389_946370_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|946366_946579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|946575_947757_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947920_948655_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|948656_951269_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|951404_953318_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953933_954344_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|954441_955527_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|955625_956576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|956572_957547_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|957671_958583_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958859_959252_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|959381_960332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	979754	1050021	4109174	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|979754_980705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|980785_981697_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|981757_982903_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|982922_983837_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|983908_984658_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|984657_985587_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|985830_987657_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|987739_988381_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|988603_989605_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|991441_992506_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|993303_994212_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|995699_996974_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|997127_997508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|997515_998388_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|998693_999074_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|999284_1000010_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1000105_1001056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1001160_1002210_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1002347_1003364_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004872_1005445_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1005504_1006236_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1006287_1007205_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1008012_1011192_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1011188_1012571_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1012640_1012892_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1013037_1013652_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1013838_1015953_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1016028_1016880_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016876_1017503_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1017499_1019254_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1019546_1022252_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1022264_1023926_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023938_1025729_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025950_1027126_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1027168_1028119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1028217_1028958_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1029152_1031189_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1031206_1032217_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1032334_1033528_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1033557_1034331_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1034327_1035518_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1035543_1036482_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1036478_1038827_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038981_1039623_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1039726_1040860_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1040952_1041105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1041136_1041685_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1041703_1042189_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1042366_1043305_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1043307_1043625_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1043670_1044615_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1046295_1046946_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046999_1047335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1047331_1048192_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1048208_1048490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1048563_1048827_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1049070_1050021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1062239	1120670	4109174	transposase,holin,tRNA,protease	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1062239_1063256_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1064044_1065094_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1065090_1066734_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066730_1067618_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067758_1068232_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1068221_1069244_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1069240_1070668_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1071605_1072622_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072954_1073890_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073939_1075820_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075886_1076231_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1076375_1077512_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077508_1078582_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078739_1080176_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080266_1080908_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1081243_1082260_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1084302_1085253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1086455_1087877_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1088140_1088857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088941_1089259_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1089299_1089713_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089714_1090074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1090116_1091661_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091744_1092575_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1092609_1093764_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093806_1094679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094795_1097084_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1098290_1098755_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098781_1099732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099749_1099887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1100099_1100876_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100920_1101778_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101799_1102816_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102950_1103991_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1104185_1106267_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1106502_1107996_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1108226_1109021_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1109241_1110600_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1110596_1111439_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1111457_1113344_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1113285_1113537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1113581_1114214_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1114232_1114835_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1114986_1115937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1116517_1117225_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1117583_1118570_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118709_1119723_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119719_1120670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1160369	1222540	4109174	transposase,tRNA	Erysipelothrix_phage(33.33%)	49	NA	NA
WP_010930198.1|1160369_1161320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1161418_1162042_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1162215_1164498_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1164652_1167349_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1167474_1167963_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1170373_1173244_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1173289_1174504_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174733_1176161_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1176258_1177350_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1177362_1178121_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1178208_1179111_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1179107_1180058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1180187_1181171_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1181225_1181948_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1183426_1184782_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1184862_1187238_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1187402_1189478_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1189539_1190340_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1190441_1191404_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1191391_1192147_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1192254_1193892_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1193959_1194697_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1194799_1195375_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1195547_1196084_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1196086_1196431_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1196446_1197292_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1197330_1198710_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1198787_1199669_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1199767_1200718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1200714_1201125_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1201232_1202087_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1202079_1203042_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1203087_1204212_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1204317_1205196_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1205320_1206100_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1206253_1207675_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1208109_1209807_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1210033_1210975_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1211301_1212048_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1212055_1212982_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1213103_1214021_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1214060_1215014_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1215038_1215617_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1217290_1217899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1217976_1218330_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1218413_1219403_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_076879566.1|1219605_1220556_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1220642_1221593_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1221589_1222540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1273468	1330679	4109174	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1273468_1274419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1278165_1278777_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1278999_1280460_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1280556_1282149_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1282502_1282760_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1282761_1284102_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1284197_1284887_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1284899_1286330_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1288054_1288876_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1288886_1290458_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1290486_1291464_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1291490_1292294_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1292290_1293085_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1293092_1294328_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1294320_1294755_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1295504_1296455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1297076_1298804_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1298915_1300274_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1300566_1301517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1301557_1302628_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1302650_1303529_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1303700_1304672_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1304834_1305677_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1305838_1306519_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1306512_1307682_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1307678_1308710_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1308753_1309995_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1310029_1311562_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1311642_1312266_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1312296_1312908_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1312943_1313414_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1313845_1314850_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1314886_1316401_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1316404_1317364_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1317392_1318196_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1318197_1319832_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1319915_1320977_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1321175_1321445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1321448_1321973_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1322388_1323339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1323335_1324370_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1324478_1325117_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1325411_1325639_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1325761_1326475_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1326719_1327670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1327773_1328055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1328169_1329618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1329728_1330679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1420912	1473065	4109174	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1420912_1421863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1422029_1422383_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1422395_1422758_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1422799_1423225_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1423427_1424684_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1424882_1425863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1426012_1427254_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1427352_1428303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1428311_1429007_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1431828_1432428_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1432438_1434604_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1434627_1436412_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1436411_1436501_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1437195_1437468_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1437467_1439534_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1439530_1440481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1440579_1441530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1441645_1441978_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1441974_1442661_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1442647_1443607_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1443648_1446009_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1446008_1446641_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1446742_1448083_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1448129_1449485_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1449610_1450255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1450199_1450517_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1450789_1451305_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1451398_1451560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1451575_1452331_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1452669_1452876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1452883_1453543_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1453837_1456042_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1456152_1457376_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1457498_1458473_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1458540_1459734_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1459748_1460549_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1460545_1462402_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1462398_1463004_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1463022_1464408_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1465133_1466360_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1466448_1467231_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1467329_1468280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1468306_1469080_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1469091_1470333_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1472114_1473065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1516990	1585076	4109174	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1516990_1517479_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1517596_1518175_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1518280_1518649_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1518747_1519698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1519704_1520817_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1521503_1522706_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1522741_1522888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1522909_1525570_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1525582_1528987_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1529654_1531880_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1531926_1532253_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1532303_1532912_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1533010_1533961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1534030_1534795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1534791_1535391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1535494_1536346_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1536405_1537032_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1537028_1537979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1538077_1539190_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1539179_1540181_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1540286_1541798_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1541794_1543099_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1543210_1543771_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1544038_1544593_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1545048_1545264_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1545518_1548116_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1548112_1549300_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1549958_1550573_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1550661_1551789_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1551800_1552706_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1553598_1554549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1554730_1555483_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1555551_1556211_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1556207_1556936_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1556948_1559228_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1559252_1559456_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1559497_1560130_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1560265_1561183_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1561179_1561893_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1562130_1562901_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1562905_1563505_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1563749_1565240_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1565298_1565583_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1565720_1565876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1566148_1567075_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1567211_1567952_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1568118_1569495_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1569676_1570582_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1572233_1574036_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1574162_1574804_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1574902_1575853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1575874_1577095_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1577280_1578693_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1578756_1579824_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1579823_1581311_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1581320_1582265_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1582424_1583123_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1583200_1584106_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1584125_1585076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1621025	1676616	4109174	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1621025_1621976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1622034_1622808_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1622800_1624357_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1624353_1625304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1626630_1627233_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1627472_1628174_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1628167_1628950_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1629134_1630085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1630183_1630921_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1631110_1631869_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1631915_1632905_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1633082_1634051_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1635590_1636559_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1636567_1637509_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1637982_1638993_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1638983_1640498_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1640494_1641841_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1641843_1642878_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1642927_1644553_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1645105_1646056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1646160_1647108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1647161_1648976_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1648968_1649643_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1649772_1652847_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1652860_1653160_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1653474_1654098_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1654341_1655211_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1655188_1656133_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1656218_1657145_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1657257_1658037_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1658027_1659224_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1659254_1660205_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1660426_1661116_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1661180_1661936_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1661987_1662980_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1662989_1663943_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1664058_1665021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1666422_1666851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1666847_1667798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1668091_1668829_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1669252_1670440_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1670443_1670824_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1672543_1673515_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1673528_1674242_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1674246_1675164_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1675270_1675567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1675665_1676616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1834383	1893653	4109174	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1834383_1835334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1835458_1836268_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1836468_1837419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1838692_1839910_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1840966_1841869_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1841945_1842818_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1842948_1843317_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1843374_1844421_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1844616_1845873_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1845877_1847215_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1847364_1848321_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1848423_1849356_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1849471_1849792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1849784_1850144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1850191_1851766_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1851818_1852763_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1852780_1853611_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1853603_1855238_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1855234_1856590_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1857496_1859074_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1859077_1860352_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1860449_1860824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1862539_1863673_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1863710_1864316_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1864312_1865131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1865202_1867827_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1867813_1868068_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1868134_1868716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1869019_1869280_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1869445_1870069_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1870068_1870842_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1870838_1872047_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1872072_1872546_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1872619_1873570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1873668_1874619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1874717_1876067_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1876832_1877588_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1877680_1880563_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1880885_1881311_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1881338_1882487_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1882483_1882990_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1882996_1884292_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1884350_1885637_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1885638_1886277_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1886279_1887440_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1887466_1888822_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1888825_1889896_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1890034_1890271_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1890358_1891465_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1891430_1892735_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1892753_1893653_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1903893	1948216	4109174	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1903893_1904844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1904942_1905893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1906092_1907178_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1907193_1907955_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1907951_1908911_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1908973_1909474_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1909506_1910250_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1910345_1910585_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1910598_1910751_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1910836_1912327_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1912418_1913357_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1913353_1913530_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1913532_1914195_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1915816_1915960_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1915956_1916931_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1917097_1918048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1918044_1919319_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1919422_1920616_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1920612_1921266_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1921262_1922699_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1922686_1923046_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1923860_1924001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1924018_1924969_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1926014_1927880_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1928137_1929658_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1929745_1930396_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1931344_1932640_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1932661_1933546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1933644_1934520_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1934509_1934866_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1934996_1935971_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1936100_1936280_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1936377_1936902_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1936912_1937749_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1937861_1938233_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1938229_1938781_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1938796_1940488_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1940536_1941217_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1941464_1941929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1942098_1943028_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1943040_1943688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1943761_1945579_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1945662_1946613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1947265_1948216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	1977989	2042358	4109174	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1977989_1978940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1979161_1980112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1980210_1981176_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1981313_1982213_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1984807_1986295_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1986305_1987502_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1987574_1988894_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1988890_1989766_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1989796_1990945_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1990962_1991277_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1991298_1992021_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1992020_1992839_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1992843_1993371_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1993376_1994633_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1994991_1996131_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1996208_1997081_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1997951_1998902_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1998861_1999497_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1999856_2001179_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2001497_2002319_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2003743_2004316_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2004355_2006185_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2006147_2007206_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2007243_2007705_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2007789_2008536_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2010026_2013257_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2013323_2014655_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2014907_2015282_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2015384_2016563_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2016573_2017164_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2017274_2018081_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2018106_2018901_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2019901_2020876_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2021034_2021547_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2021703_2022675_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2024419_2025226_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2025222_2026524_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2026474_2027239_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2027352_2028123_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2028207_2029395_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2029467_2029842_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2029942_2031205_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2031201_2032059_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2032231_2033233_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2033684_2034635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2036150_2037350_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2037718_2037955_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2038018_2038186_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2038299_2040105_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2040358_2041309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2041407_2042358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	2173887	2223541	4109174	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2173887_2174838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2174936_2176931_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2176990_2177956_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2177945_2180807_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2180809_2181316_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2181420_2182629_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2182630_2183569_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2183730_2184204_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2184200_2185151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2185261_2185702_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2185830_2187060_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2187098_2187920_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2187973_2189125_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2189216_2189705_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2192255_2194805_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2194875_2197449_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2197714_2197915_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2197946_2198108_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2198165_2198504_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2198652_2199603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2200378_2201047_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2201028_2203044_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2203226_2203976_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2203988_2204852_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2204855_2206271_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2206404_2207133_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2207271_2207472_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2207647_2208046_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2208069_2209470_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2209588_2210341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2210629_2211229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2211333_2212113_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2212109_2212994_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2213011_2213791_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2213775_2214534_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2214659_2215307_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2215574_2216591_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2216688_2217729_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2217863_2219156_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2220515_2220899_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2220916_2221504_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2221541_2222492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2222590_2223541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	2479848	2538092	4109174	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2479848_2480799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2481278_2481935_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2481949_2483617_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2483619_2484249_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2484460_2485555_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2485699_2486512_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2486515_2488219_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2488269_2489400_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2489586_2490663_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2490744_2491395_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2491409_2492813_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2493096_2493915_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2493911_2494616_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2495515_2496631_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2496664_2497039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2497061_2498219_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2498231_2498465_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2499099_2502069_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2502083_2502293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2502444_2503074_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2503070_2505161_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2505184_2505865_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2505861_2506422_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2506428_2507526_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2507678_2508272_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2508268_2509561_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2509574_2510117_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2510126_2510963_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2510996_2512058_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2512099_2513152_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2513167_2513470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2513611_2514562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2514740_2516435_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2516431_2517517_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2517564_2518464_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2518474_2519119_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2520140_2523383_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2523393_2524548_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2524774_2525737_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2525835_2526786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2526884_2527835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2527844_2528534_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2528593_2529031_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2529076_2529970_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2530017_2531190_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2531186_2532341_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2532537_2532888_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2532877_2533312_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2533328_2534279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2534426_2534894_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2534874_2536032_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2536097_2537024_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2537141_2538092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	2580370	2646870	4109174	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2580370_2581321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2581690_2582263_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2582265_2583276_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2583268_2583769_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2583779_2584121_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2584132_2584924_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2584940_2585210_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2585232_2586021_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2586067_2587084_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2587300_2588743_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2588921_2590541_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2590661_2592482_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2592560_2594093_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2594126_2595773_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2595842_2596865_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2596882_2598016_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2598018_2598708_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2598707_2599493_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2599536_2600301_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2600339_2601761_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2601826_2602531_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2602578_2602998_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2603010_2603418_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2603601_2604312_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2604438_2604729_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2604746_2605229_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2609734_2610889_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2611194_2612211_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2612457_2613246_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2613312_2613993_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2613989_2614760_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2614858_2615809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2615864_2616782_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2616792_2617971_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2617990_2618986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2620574_2621183_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2621170_2622211_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2622228_2623191_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2623187_2624381_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2624377_2625175_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2625200_2626187_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2626205_2628245_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2628446_2629127_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2629140_2630052_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2630048_2630627_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2630765_2631671_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2631678_2635098_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2635085_2637686_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2638641_2639274_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2639667_2640426_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2640422_2641625_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2641812_2642763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2643670_2644816_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2644802_2645558_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2645674_2645854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2645919_2646870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	2810475	2864992	4109174	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2810475_2811426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811754_2812360_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2812413_2813727_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813801_2814272_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2814271_2815060_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2815070_2816723_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816810_2817761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818922_2819429_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2819425_2820190_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2820205_2820490_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820554_2821544_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821715_2822645_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822616_2823303_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2823336_2823882_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823926_2825192_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2825188_2826091_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2827272_2828217_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2828311_2829829_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829870_2831499_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831606_2832488_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835600_2835975_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835999_2836338_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2836381_2838016_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2838054_2839401_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2839508_2840930_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840999_2841584_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2841686_2842637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842771_2843878_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843888_2844986_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845130_2846336_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846342_2846864_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2846860_2847352_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847348_2847600_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847580_2848066_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848201_2851663_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851680_2852565_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852574_2853006_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853252_2853756_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853833_2855234_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855308_2856184_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856180_2857188_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2857655_2857961_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858051_2858642_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858832_2859849_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860040_2862377_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2862459_2862894_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862992_2863943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864041_2864992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	2873017	2929803	4109174	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2873017_2873968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2875674_2875941_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2876648_2876987_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881540_2882143_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2882239_2883529_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883586_2884318_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2884314_2885118_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2885114_2886203_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2886199_2887129_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2887277_2888423_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2888444_2889395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2889725_2893547_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893703_2894372_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2894376_2896050_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896068_2897388_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2897392_2899708_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899763_2901932_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2901928_2907118_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907207_2907522_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907749_2907995_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908089_2908608_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908707_2909913_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910028_2911426_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911542_2912121_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912193_2913585_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913752_2914703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914983_2915604_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915600_2916014_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916010_2917054_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917109_2917298_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917307_2918072_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918162_2918819_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918910_2919669_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919694_2921296_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921496_2922501_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922601_2922865_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922982_2923759_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924349_2925300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927683_2928796_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928852_2929803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	2960189	3003880	4109174	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2960189_2961140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2961260_2962157_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964434_2966660_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966824_2967913_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967869_2968523_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968570_2969368_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969899_2970850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2970924_2972079_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972135_2973086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973184_2973490_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973518_2973953_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973954_2975199_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975195_2975906_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975920_2976832_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977194_2977599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977595_2978054_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2978060_2978969_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2978965_2979832_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979818_2980646_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2980656_2981784_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982861_2984100_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984141_2985404_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985410_2986163_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986214_2986400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2986675_2987140_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987171_2987831_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987975_2990084_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990080_2991031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991134_2991755_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2991846_2992599_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993733_2994858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994903_2995272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995513_2996464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997499_2998042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998239_2998410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998427_2999378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2999374_3000340_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000409_3001246_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001758_3002868_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002929_3003880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	3188298	3250531	4109174	transposase,protease	Xanthomonas_phage(33.33%)	51	NA	NA
WP_005012067.1|3188298_3189249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3189257_3189806_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3189802_3190411_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814558.1|3190593_3191064_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3191070_3192330_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3192382_3193195_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3193309_3193864_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_023998380.1|3193873_3194863_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3195042_3195762_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3195778_3198514_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3198693_3199680_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3199808_3200216_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3200327_3201251_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3201479_3202664_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3202852_3204079_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3204083_3204905_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3204917_3205868_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3205864_3207271_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3207267_3208341_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3208337_3209531_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3209527_3211060_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3211056_3212226_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3212215_3215053_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3215049_3216780_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3216776_3217055_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3217054_3218149_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3218157_3218586_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3219388_3221197_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3221236_3222316_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3222312_3223506_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3223655_3223934_+	SWIB/MDM2 domain-containing protein	NA	NA	NA	NA	NA
WP_003814593.1|3224262_3224655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3231379_3231856_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3232008_3233121_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3233188_3233749_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3233772_3234105_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3234088_3235777_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3235896_3236685_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3237392_3238343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3238787_3239099_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3239098_3239629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3239791_3240742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3241031_3241496_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3241510_3243016_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3243272_3244877_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3244932_3245838_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3246278_3247229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3247310_3247892_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3248316_3248622_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3248635_3249970_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3249991_3250531_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 28
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	3268954	3320873	4109174	transposase,holin,tRNA	Tupanvirus(16.67%)	40	NA	NA
WP_010931277.1|3268954_3269290_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3269289_3270132_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3270230_3271181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3271245_3272217_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3272280_3273300_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3273301_3274675_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3274952_3275633_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3275645_3277772_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3277768_3278863_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3278877_3280137_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3280156_3281881_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3282119_3282872_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3283010_3283961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3284273_3285752_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3285758_3286868_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3286879_3287560_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3287581_3288337_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3288472_3289357_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3289444_3290026_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3290286_3290586_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3290737_3291217_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3291936_3293373_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3293369_3293873_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3293888_3294839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3295366_3296140_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3296272_3297283_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3297434_3299090_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3299144_3299486_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3299499_3300939_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3301071_3301887_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3302080_3303031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3304418_3305366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3305592_3306333_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3306418_3307369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3308810_3310382_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3310714_3312568_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3312612_3315177_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3315595_3316546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3319411_3319906_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3319922_3320873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	3382776	3436517	4109174	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382776_3383727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384131_3384776_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384800_3385385_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385485_3386103_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386105_3387821_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387817_3388126_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388142_3388760_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388804_3389107_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389207_3390062_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390249_3390474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3390643_3390916_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391333_3391741_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392110_3392905_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393005_3394241_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394309_3395326_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395337_3396714_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396710_3397907_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397903_3399442_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399438_3400698_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3402638_3403589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404355_3405450_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405442_3406777_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406730_3407414_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3407439_3408603_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3408599_3409601_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409600_3410473_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410469_3411219_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411215_3412007_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412003_3413143_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413418_3414204_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414237_3415020_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415023_3415413_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3416552_3417416_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3417451_3418540_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418536_3419487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419840_3422819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423745_3424624_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426572_3427523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427519_3427987_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428029_3428800_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428820_3429621_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429631_3431041_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431135_3431921_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432160_3433177_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433284_3433677_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433814_3434495_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434499_3435471_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435566_3436517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	3442672	3501970	4109174	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3442672_3444436_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444547_3445426_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445538_3446354_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446357_3446609_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446693_3447710_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448040_3448262_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450622_3451540_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452037_3453246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453325_3454897_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455014_3455950_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456138_3457083_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3457650_3463368_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463373_3464501_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464556_3465183_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3465454_3466471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466566_3467277_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467273_3468263_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468358_3469990_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469992_3470730_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470885_3471758_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3472026_3473247_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473243_3473903_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473974_3474607_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474636_3475155_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475165_3476275_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476321_3477176_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477177_3478080_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479302_3480253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482007_3482997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482993_3483152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3483172_3483961_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483957_3484989_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485007_3485571_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485626_3487147_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487410_3488115_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3488122_3488860_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488965_3489340_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489382_3490672_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3490668_3491838_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491834_3492674_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492733_3493669_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493681_3494632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494730_3495693_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495724_3496084_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496208_3497111_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497112_3498885_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498919_3499696_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501019_3501970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	3516908	3574981	4109174	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516908_3517859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517987_3519121_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519164_3520070_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520072_3521773_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521769_3522690_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522697_3523675_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523733_3524768_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526742_3526979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527105_3527969_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528057_3528879_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528958_3529696_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3529692_3530685_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530798_3531461_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531505_3532654_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534977_3535928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536268_3537219_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537317_3538268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538564_3539062_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539104_3540880_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540887_3541754_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541760_3542495_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3543664_3544459_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544748_3545339_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545372_3546701_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546775_3547921_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548032_3549031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548993_3549428_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550944_3551829_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551825_3553031_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553027_3553888_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3554000_3555791_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555831_3556497_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3556497_3556806_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556971_3558258_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3559691_3560642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562593_3563808_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563913_3564903_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564899_3565508_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565520_3566150_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566146_3566767_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566798_3567590_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568441_3568897_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568915_3569842_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569895_3571182_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572112_3572985_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572981_3573932_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574030_3574981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011743	Bordetella pertussis strain I754 chromosome, complete genome	4109174	4031345	4084777	4109174	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4031345_4032296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032465_4033692_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033891_4034758_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034750_4035713_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035813_4036764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036862_4037813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037911_4038862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038858_4040352_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040348_4043456_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043452_4046521_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046517_4047768_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4047948_4048710_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4048742_4049393_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4049395_4050235_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050475_4051219_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4051301_4051649_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051746_4052589_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4052633_4053521_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053547_4053736_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053833_4055291_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055277_4056804_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056822_4057290_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4057289_4058312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4058432_4059152_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4059227_4060328_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060329_4061520_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4061639_4062656_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062974_4063646_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4063642_4064551_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064762_4065410_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4069261_4070338_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070348_4071158_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4071247_4072021_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4072203_4073154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4073042_4074065_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4074054_4075209_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4075248_4076661_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4076785_4077652_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4077653_4078478_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4078474_4079236_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4079316_4080003_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4080176_4081184_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4081180_4081960_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4082017_4083280_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4083826_4084777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
